CK935478

Overview
NameCK935478
Unique NameCK935478
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length953
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935478 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.252e-11
Identity = 59/204 (28.92%), Postives = 81/204 (39.71%), Query Frame = 2
Query:  260 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------------------IXXXXXXXXXXXXXXXXAFDPLGLA---------DDPDQFAELKVKELKNGRLAVFSMFGFFVQAIVTGKGPI 781
            P +L G  PGD+G+D  GL  DP      RE E+IH RWAM   LG          G  +    WF+AGA            +P  I   S  ++   Q++LMG+VE  R                                       FDPL LA          D ++   LK+ E+K+ RLA+ +M  F+ +A   GK P+
Sbjct:   68 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEA-GQGKTPL 251          
BLAST of CK935478 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.635e-11
Identity = 69/223 (30.94%), Postives = 90/223 (40.36%), Query Frame = 2
Query:  260 PSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN----------------------------------RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFA-ELKVKELKNGRLAVFSMFGFFVQAIVTGKGPIENL 790
            P +L G  PGD G+D  GLS   E             AKN                                  RE E+IH RWAML  LG +  E  +  GV      W +AG       G  Y G   L    SI  +   +V+L+G  E YR                  FDPL LA + ++ A  LK  E+K+ RLA+ S FG+ VQA+ TG+G + +L
Sbjct:   60 PEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAE--ATTGVS-----WVEAGKVELD--GASYAG---LSLPFSITQLIWIEVILVGGAEFYR---NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSL 267          
The following BLAST results are available for this feature:
BLAST of CK935478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB4B_SOLLC1.252e-1128.92Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB29_CHLRE1.635e-1130.94Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004555_C05 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935478 ID=CK935478; Name=CK935478; organism=Citrus sinensis; type=EST; length=953bp
GGGGATATTCAGAGTGCGAAAAGAAGCTTCAGCAACAAAAGGAAAAGCTT
TCGCATAAGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTGCT
GGCCAGACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGT
TGCTGACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCACTCCCC
AGAGCATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCT
GAGCAAACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTG
GGATACCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTG
AGCTAGAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGC
GTCTTCCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGT
TTGGTTCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTGACTATC
TTGGCAACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCC
TGCCAGGTTGTGCTCATGGGTTTTGTTGAAGGATACAGAATTGGTGGCGG
TCCTCTTGGTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGACC
CACTTGGTTTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAGGTCAAG
GAGCTCAAGAATGGCCGTCTGGCTGTGTTCTCCATGTTTGGATTCTTTGT
TCAGGCTATTGTCACTGGGAAGGGTCCAATTGAGAACCTCTACGACCACA
TTGCTGATCCTGTGGCCAACAATGCCTGGGCTTATGCCACTAACTTTGTT
CCCGGAAAGTGAAGAAACTCATGACTTGATGGTGTCTGTTTCATCTGNNA
CATTATTCTATCTATCGTATGTGCTTTTGTGGAAAACTCTGTCATGGACT
TAC
back to top