CK935494

Overview
NameCK935494
Unique NameCK935494
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length930
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935494_ssr83 microsatellite CK935494_ssr83:83..115. BLAST: Citrus ESTs to Prunus persica proteins V1
CK935494_ssr111 microsatellite CK935494_ssr111:111..122. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9730 contig Csv1_Contig9730:1..919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 4.383e-38
Identity = 92/218 (42.20%), Postives = 131/218 (60.09%), Query Frame = 2
Query:  233 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVG 883
            +F++A+ AEF+A L+F+ +SV + I      +    V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y+ AQCLGAI G G++  ++    + +GG G  TV      G  L  E+I TF LV+T+F++ D KR    + V     L IGF+V + HL  I  TG  +NPARSFG AVI  N   W++HWI+WVGP +G
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKR----TDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIG 240          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 9.764e-38
Identity = 92/218 (42.20%), Postives = 131/218 (60.09%), Query Frame = 2
Query:  233 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVG 883
            +F++A+ AEF+ATL+F+ + V + I      +    V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y++AQCLGAI G G++  ++    + +GG G  TV      G  L  E+I TF LV+T+F++ D KR    + V     L IGF+V + HL  I  TG  +NPARSFG AVI  N   W +HWI+WVGP +G
Sbjct:   33 AFWKAVSAEFLATLIFVLLGVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIIAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKR----TDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WANHWIYWVGPIMG 240          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.764e-38
Identity = 91/218 (41.74%), Postives = 132/218 (60.55%), Query Frame = 2
Query:  233 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVG 883
            +F++A+ AEF+A L+F+ +S+ + I    + +    V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y+ AQCLGAI G G++  ++    + +GG G  TV      G  L  E+I TF LV+T+F++ D KR    + V     L IGF+V + HL  I  TG  +NPARSFG AVI  N   W++HWI+WVGP +G
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSLGSTINWGGKENPLP-VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKR----TDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIG 240          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 1.079e-36
Identity = 92/221 (41.63%), Postives = 132/221 (59.73%), Query Frame = 2
Query:  233 SFYRALIAEFVATLLFLYVSVATVI---GHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVG 883
            +F++A+ AEF+A L+F+ +S+ + I   G +K       V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y+ AQCLGAI G G++  ++    + +GG G   V      G  L  E+I TF LV+T+F++ D KR    + V     L IGF+V + HL  I  TG  +NPARSFG AVI  N   W++HWI+WVGP +G
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLP----VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKR----TDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIG 240          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 1.841e-36
Identity = 91/221 (41.18%), Postives = 133/221 (60.18%), Query Frame = 2
Query:  233 SFYRALIAEFVATLLFLYVSVATVI---GHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVG 883
            +F++A+ AEF+A L+F+ +S+ + I   G +K       V ++ I+  FG  I  +V C   ISGGHINPAVT  +   R++S+ ++V Y+ AQCLGAI G G++  ++    + +GG G  TV    + G  L  E+I TF LV+T+F++ D KR    + V     L IG +V + HL  I  TG  +NPARSFG AVI  N   W++HWI+WVGP +G
Sbjct:   33 TFWKAVTAEFLAMLIFVLLSLGSTINWGGAEKPLP----VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRRISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLSAGHGLLVELIITFQLVFTIFASCDSKR----TDVTGSIALAIGISVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIG 240          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.839e-34
Identity = 88/220 (40.00%), Postives = 129/220 (58.64%), Query Frame = 2
Query:  242 RALIAEFVATLLFLYVSVATVIGHKKQSDACGGV--GLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG---GANTVASGYNKGSALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVG 883
            +A +AEF++ L+F++    + +   K +D  G    GL+  + A    +FV V   A ISGGH+NPAVTFG F+   +SL++AV Y VAQ LG++    L+K        + GG   GA ++++G    +A+  EI+ TF LVYTV+ +A DPK+      + V+AP+ IGF V    LA     G  +NPA SFG AV+      WD+HW++W+GPFVG
Sbjct:   21 KAAVAEFISMLIFVFAGSGSGMAFSKLTDGGGTTPSGLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLKI-------ATGGAAVGAFSLSAGVGAWNAVVFEIVMTFGLVYTVYATAVDPKK----GDLGVIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVTG---VWDNHWVYWLGPFVG 226          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: AQP_HAEIX (Aquaporin OS=Haematobia irritans exigua PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.117e-33
Identity = 80/220 (36.36%), Postives = 120/220 (54.55%), Query Frame = 2
Query:  224 KLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVG 883
            K+W   R L+AE + T   + + V +  G  + S +     +  IA+ FG  +  L      ISG HINPAVT G  +  ++S+I++V Y+  QC+GAI G  ++K  +    + L  G ++ +S    G A+  E + TF+LV  V   +DP R    + +   APL +G ++   HL  I +TG  +NPARSFG AV+ N    W DHW++WVGP VG
Sbjct:   21 KIW---RQLMAELIGTFFLVVIGVGSCTGGSEWSPS-----IPQIAFTFGLTVATLAQAIGHISGCHINPAVTVGFLIVGEMSIIKSVLYIAVQCVGAIAGAAVIKVGVSEAVSGLDLGVSSFSSTLTVGQAVLIEALITFILVVVVKGVSDPGR----TDIKGSAPLAVGLSIAAGHLCAIKLTGASMNPARSFGPAVVQN---MWIDHWVYWVGPIVG 225          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: AQP5_PIG (Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.117e-33
Identity = 88/219 (40.18%), Postives = 127/219 (57.99%), Query Frame = 2
Query:  233 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAP-LPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVG 883
            +F +A+ AEF+ATL+F++  +A+ +             +L IA AFG  I  L      +SGGHINPA+T  L +  ++SL+RAV Y+VAQ +GAI G G++        N+ G    N++ +    G A+  E+I TF L   +FS+TD +R++     PV +P L IG +V + HL  I  TG  +NPARSFG AV+ N  +    HW+FWVGP VG
Sbjct:    9 AFLKAVFAEFLATLIFVFFGLASALKWPSALPT-----ILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAVFYVVAQLVGAIAGAGILYGLAPG--NARGNLAVNSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMN--RFSPSHWVFWVGPIVG 213          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.905e-33
Identity = 88/217 (40.55%), Postives = 125/217 (57.60%), Query Frame = 2
Query:  242 RALIAEFVATLLFLYVSVATVIGHKKQSD--ACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVG 883
            RA +AEF++TLLF++  V + I + K +   A    GL+ IA   G  +FV V   A ISGGH+NPAVTFGL +  ++++I  V Y +AQ LG+     L    +K+    L    ++VA+G      +  EII TF LVYTV+ +A DPK+ +    +  +APL IG  V    LA  P +G  +NPARSFG AV   +   +  HW++WVGP +G
Sbjct:   19 RAYLAEFISTLLFVFAGVGSAIAYAKLTSDAALDTPGLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFL----LKYVTGGLAVPTHSVAAGLGSIEGVVMEIIITFALVYTVYATAADPKKGS----LGTIAPLAIGLIVGANILAAGPFSGGSMNPARSFGPAVAAGD---FSGHWVYWVGPLIG 224          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: AQP5_RAT (Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.250e-33
Identity = 85/219 (38.81%), Postives = 126/219 (57.53%), Query Frame = 2
Query:  233 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAP-LPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVG 883
            +F++A+ AEF+ATL+F++  + + +             +L I+ AFG  I  L      +SGGHINPA+T  L +  ++SL+RAV Y+ AQ +GAI G G++  +     N+ G    N + +    G A+  E+I TF L   +FS+TD +R++     PV +P L IG +V + HL  I  TG  +NPARSFG AV+ N  +    HW+FWVGP VG
Sbjct:    9 AFFKAVFAEFLATLIFVFFGLGSALKWPSALPT-----ILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAVFYVAAQLVGAIAGAGIL--YWLAPLNARGNLAVNALNNNTTPGKAMVVELILTFQLALCIFSSTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMN--RFSPSHWVFWVGPIVG 213          
The following BLAST results are available for this feature:
BLAST of CK935494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
AQP4_RAT4.383e-3842.20Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
AQP4_MOUSE9.764e-3842.20Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]
AQP4_DIPME9.764e-3841.74Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
AQP4_HUMAN1.079e-3641.63Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
AQP4_BOVIN1.841e-3641.18Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
TIP12_ORYSJ3.839e-3440.00Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
AQP_HAEIX1.117e-3336.36Aquaporin OS=Haematobia irritans exigua PE=2 SV=1[more]
AQP5_PIG1.117e-3340.18Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1[more]
TIP21_ARATH1.905e-3340.55Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
AQP5_RAT3.250e-3338.81Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004555_A10 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935494 ID=CK935494; Name=CK935494; organism=Citrus sinensis; type=EST; length=930bp
GGGGACAGACGCTAGCTTTTCTCGAGACCAGAGAGGCTGTGTGCTTTTCT
TTGATTGTTCCAAAGAGAAATCAAAATCTTGTGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAAGAAAGATGTCAAAGGAAGTGAATGAAGAAGGACA
AACTCACCGCCATCACCATGGCAAGGACTACGTGGACCCACCACCAGCAC
CACTCATTGACATGGCTGAGCTCAAGCTCTGGTCCTTTTACAGAGCTCTC
ATAGCCGAGTTCGTGGCCACTCTCCTCTTCCTCTACGTCAGTGTTGCCAC
TGTCATTGGCCACAAGAAACAAAGTGATGCCTGTGGTGGTGTTGGCCTTT
TGGGTATTGCATGGGCCTTTGGTGGCATGATCTTCGTCCTTGTTTACTGC
ACCGCTGGCATTTCTGGTGGTCACATTAACCCTGCTGTGACGTTTGGGCT
GTTCTTGGCAAGGAAGGTATCATTGATCAGGGCTGTGGCTTACATGGTGG
CTCAGTGCTTGGGTGCCATTTGCGGTGTTGGTTTGGTCAAGGCCTTCATG
AAGCATGAGTACAACTCACTTGGTGGTGGTGCTAACACTGTGGCTTCTGG
CTACAACAAAGGATCAGCCTTGGGTGCTGAGATTATTGGTACCTTCGTGC
TTGTTTACACAGTCTTCTCGGCCACAGACCCCAAGAGAAGCGCTCGTGAC
TCTCACGTGCCCGTTTTGGCTCCACTTCCAATTGGATTTGCTGTGTTCAT
GGTTCACTTGGCCACCATCCCCATCACTGGAACGGGCATCAACCCTGCTA
GGAGCTTTGGTGCTGCTGTTATCTACAACAATGACAAGGCCTGGGATGAC
CATTGGATCTTCTGGGTTGGTCCTTTCGTTGGAGCATTGGCTGCAGCGGC
ATACCACCAGTACATNCTGAGGGCTGCTGC
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