CK935494

Overview
NameCK935494
Unique NameCK935494
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length930
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935494_ssr83 microsatellite CK935494_ssr83:83..115. BLAST: Citrus ESTs to Prunus persica proteins V1
CK935494_ssr111 microsatellite CK935494_ssr111:111..122. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9730 contig Csv1_Contig9730:1..919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 8.006e-32
Identity = 81/224 (36.16%), Postives = 122/224 (54.46%), Query Frame = 2
Query:  212 MAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVG 883
            M EL+  SF+RA+ AEF ATL +++  +   +       A G + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA+ YM AQ LGA+ G  ++ +             NT+  G + G A   EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  TG G+NPARSF  A++  N   + +HW++WVGP +G
Sbjct:    1 MWELRSASFWRAIFAEFFATLFYVFFGLGASLRW-----APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMAAQLLGAVAGAAVLYSVTPAAVRG-NLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRN---FTNHWVYWVGPIIG 211          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: AQP_AEDAE (Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.366e-31
Identity = 79/221 (35.75%), Postives = 118/221 (53.39%), Query Frame = 2
Query:  233 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGG---VGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVG 883
            + +R L+AEF+ T   + + + + +G        GG     +  IA+ FG ++  L      +SG HINPAVT GL +   +S+++   Y+V+QC+GAI G  L+KA    +   +GG G   +      G  +  E + TF+LV+ V    D +R    S +   APL IG ++   HL+ I  TG  +NPARSFG AV+  N   W D W++WVGP VG
Sbjct:   21 NIWRMLVAEFLGTFFLVSIGIGSTMGW-------GGDYAPTMTQIAFTFGLVVATLAQAFGHVSGCHINPAVTIGLMITADISILKGAFYIVSQCVGAIAGAALIKAATPSDV--IGGLGVTGIDPRLTAGQGVMIEALITFILVFVVHGVCDNRR----SDIKGSAPLAIGLSITAGHLSAIKYTGASMNPARSFGPAVVMGN---WTDQWVYWVGPIVG 225          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.783e-31
Identity = 81/224 (36.16%), Postives = 123/224 (54.91%), Query Frame = 2
Query:  212 MAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVG 883
            M EL+  SF+RA+ AEF ATL +++  +   +       A G + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA+ Y+VAQ LGA+ G  ++ +             NT+  G + G A   EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  TG G+NPARSF  A++  N   + +HW++WVGP +G
Sbjct:    1 MWELRSASFWRAIFAEFFATLFYVFFGLGASLRW-----APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRG-NLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRN---FTNHWVYWVGPVIG 211          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.329e-31
Identity = 83/216 (38.43%), Postives = 118/216 (54.63%), Query Frame = 2
Query:  242 RALIAEFVATLLFLYVSVATVIG-HKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSAT-DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVG 883
            RA I+EF+AT +F++ +  +V+   K   D     GL+ +A A    + V V     ISGGH+NPAVTFG  +  +VSL+RAV Y VAQ LGA+    L++         +      +ASG     A+  E + TF L+Y  ++   DPKR     HV  +APL +GF +    LA  P  G G+NPAR FG A++      W  HW++W+GPF+G
Sbjct:   26 RAAISEFIATAIFVFAAEGSVLSLGKMYHDMSTAGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLLRL----ATGGMRPPGFALASGVGDWHAVLLEAVMTFGLMYAYYATVIDPKR----GHVGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALV---GWRWRHHWVYWLGPFLG 230          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.329e-31
Identity = 85/224 (37.95%), Postives = 125/224 (55.80%), Query Frame = 2
Query:  242 RALIAEFVATLLFLYVSVATVIGHKKQ---------SDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSA-TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVG 883
            RA +AEF++T +F++ +  +++   K          ++  GG+ L+ +A AF   +F  V     +SGGH+NPAVTFG  +  +V+ IRA+ Y +AQ LGAI    L    ++   N +      +ASG    + L  EII TF LVY V+S   DPKR +    + ++APL IG  V    L   P +G  +NPAR+FG A++      W DHWI+WVGPF+G
Sbjct:   24 RATLAEFLSTFVFVFAAEGSILSLDKLYWEHAAHAGTNTPGGLILVALAHAFA--LFAAVSAAINVSGGHVNPAVTFGALVGGRVTAIRAIYYWIAQLLGAI----LACLLLRLTTNGMRPVGFRLASGVGAVNGLVLEIILTFGLVYVVYSTLIDPKRGS----LGIIAPLAIGLIVGANILVGGPFSGASMNPARAFGPALV---GWRWHDHWIYWVGPFIG 234          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.329e-31
Identity = 81/224 (36.16%), Postives = 123/224 (54.91%), Query Frame = 2
Query:  212 MAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVG 883
            M EL+  SF+RA+ AEF A+L +++  +   +       A G + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA+ YMVAQ LGA+ G  ++ +             NT+  G + G A   EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  TG G+NPARSF  A++  N   + +HW++WVGP +G
Sbjct:    1 MWELRSASFWRAICAEFFASLFYVFFGLGASLRW-----APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRG-NLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRN---FTNHWVYWVGPVIG 211          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: AQP_CICVR (Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.329e-31
Identity = 78/217 (35.94%), Postives = 116/217 (53.46%), Query Frame = 2
Query:  233 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVG 883
            + +R L AE + TLL + +   +  G +       G  ++ IA  FG +I  +V C   +SG HINPAVT GL +   +S+++A+ Y++ QC+GAI G  ++K     E+        ++A G         E   TFVL+  V S  D +R     ++   AP+ +G A+   HLA I  TG+ +NPARSFG AV  N D  W +HW++W GP VG
Sbjct:   24 TIWRCLAAELIGTLLLVLIGTGSCTGVQISE----GDVVVRIALTFGFIIATMVQCIGHVSGCHINPAVTCGLLVTGHISILKAIFYIIVQCVGAIAGSAILKVITPAEFRGT-LCMTSLAPGVTPPMGFLVEACITFVLILLVQSVCDDRR----KNLGNAAPVAVGLAITCCHLAAIKYTGSSMNPARSFGPAV--NGDDNWANHWVYWAGPIVG 229          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 3.042e-31
Identity = 87/218 (39.91%), Postives = 125/218 (57.34%), Query Frame = 2
Query:  242 RALIAEFVATLLFLYVSVATVIGHKK--QSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANT-VASGYNKGSALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVG 883
            +A +AEF+ATLLF++  V + I + +  +  A    GL+ IA A    +FV V   A ISGGH+NPAVTFGL +   ++++  + Y VAQ LGA     L+      +Y + G    T   SG ++   +  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARSFG AV   N   +  +W++WVGP VG
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYSQLTKGGALDPAGLVAIAIAHAFALFVGVSMAANISGGHLNPAVTFGLAVGGHITILTGILYWVAQLLGASVACFLL------QYVTHGQAIPTHGVSGISEIEGVVMEIVITFALVYTVYATAADPKKGS----LGTIAPMAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGN---FAGNWVYWVGPLVG 223          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.042e-31
Identity = 87/220 (39.55%), Postives = 123/220 (55.91%), Query Frame = 2
Query:  233 SFYRALIAEFVATLLFLYVSVATVIGHKKQSD--ACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVG 883
            S  +A ++EF+ATLLF++  V + +   K +   A    GL+ IA A    +FV V   A ISGGH+NPAVT GL +   ++LI    Y +AQCLG+I    L+  F+    N      + V++G      +  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARSFG AV+  +       WI+WVGP VG
Sbjct:   16 SSLKAYLSEFIATLLFVFAGVGSAVAFAKLTSDGALDPAGLVAIAIAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITLITGFFYWIAQCLGSIVAC-LLLVFVT---NGKSVPTHGVSAGLGAVEGVVMEIVVTFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGD---LSQIWIYWVGPLVG 224          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 3.042e-31
Identity = 80/224 (35.71%), Postives = 122/224 (54.46%), Query Frame = 2
Query:  212 MAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVG 883
            M EL+  SF+RA+ AEF ATL +++  +   +       A G + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA  Y+ AQ LGA+ G  ++ +             NT+ +G + G A   EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  TG G+NPARSF  A++  N   + +HW++WVGP +G
Sbjct:    1 MWELRSASFWRAIFAEFFATLFYVFFGLGASLRW-----APGPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRG-NLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRN---FSNHWVYWVGPIIG 211          
The following BLAST results are available for this feature:
BLAST of CK935494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
MIP_RABIT8.006e-3236.16Lens fiber major intrinsic protein OS=Oryctolagus ... [more]
AQP_AEDAE1.366e-3135.75Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 P... [more]
MIP_SHEEP1.783e-3136.16Lens fiber major intrinsic protein OS=Ovis aries G... [more]
TIP31_MAIZE2.329e-3138.43Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
TIP31_ARATH2.329e-3137.95Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]
MIP_BOVIN2.329e-3136.16Lens fiber major intrinsic protein OS=Bos taurus G... [more]
AQP_CICVR2.329e-3135.94Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 ... [more]
TIP23_MAIZE3.042e-3139.91Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
TIP23_ARATH3.042e-3139.55Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
MIP_MOUSE3.042e-3135.71Lens fiber major intrinsic protein OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004555_A10 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935494 ID=CK935494; Name=CK935494; organism=Citrus sinensis; type=EST; length=930bp
GGGGACAGACGCTAGCTTTTCTCGAGACCAGAGAGGCTGTGTGCTTTTCT
TTGATTGTTCCAAAGAGAAATCAAAATCTTGTGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAAGAAAGATGTCAAAGGAAGTGAATGAAGAAGGACA
AACTCACCGCCATCACCATGGCAAGGACTACGTGGACCCACCACCAGCAC
CACTCATTGACATGGCTGAGCTCAAGCTCTGGTCCTTTTACAGAGCTCTC
ATAGCCGAGTTCGTGGCCACTCTCCTCTTCCTCTACGTCAGTGTTGCCAC
TGTCATTGGCCACAAGAAACAAAGTGATGCCTGTGGTGGTGTTGGCCTTT
TGGGTATTGCATGGGCCTTTGGTGGCATGATCTTCGTCCTTGTTTACTGC
ACCGCTGGCATTTCTGGTGGTCACATTAACCCTGCTGTGACGTTTGGGCT
GTTCTTGGCAAGGAAGGTATCATTGATCAGGGCTGTGGCTTACATGGTGG
CTCAGTGCTTGGGTGCCATTTGCGGTGTTGGTTTGGTCAAGGCCTTCATG
AAGCATGAGTACAACTCACTTGGTGGTGGTGCTAACACTGTGGCTTCTGG
CTACAACAAAGGATCAGCCTTGGGTGCTGAGATTATTGGTACCTTCGTGC
TTGTTTACACAGTCTTCTCGGCCACAGACCCCAAGAGAAGCGCTCGTGAC
TCTCACGTGCCCGTTTTGGCTCCACTTCCAATTGGATTTGCTGTGTTCAT
GGTTCACTTGGCCACCATCCCCATCACTGGAACGGGCATCAACCCTGCTA
GGAGCTTTGGTGCTGCTGTTATCTACAACAATGACAAGGCCTGGGATGAC
CATTGGATCTTCTGGGTTGGTCCTTTCGTTGGAGCATTGGCTGCAGCGGC
ATACCACCAGTACATNCTGAGGGCTGCTGC
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