CK935508
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK935508 vs. ExPASy Swiss-Prot
Match: RS12_METM7 (30S ribosomal protein S12P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps12p PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.218e-30 Identity = 71/143 (49.65%), Postives = 93/143 (65.03%), Query Frame = 2 Query: 92 ANMRKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 514 A + +G AGRKL RR RW Y L + K P G+ +GIV+EK+G+EAKQPNSAIRKC RVQLIKNG+++ AF P + +N+I+E+DEV+I G G G A GDIPGVR+KVV V S+ L + ++EK Sbjct: 2 AGSKSPKGEFAGRKLLLKRRASRWHHYKYVNKALSLKLKADPLEGAPMGRGIVVEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVMVGKNSIRELVRGRQEK 144
BLAST of CK935508 vs. ExPASy Swiss-Prot
Match: RS12_METMP (30S ribosomal protein S12P OS=Methanococcus maripaludis GN=rps12p PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.941e-30 Identity = 70/143 (48.95%), Postives = 93/143 (65.03%), Query Frame = 2 Query: 92 ANMRKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 514 A + +G AGRKL R+ RW Y L + K P G+ +GIV+EK+G+EAKQPNSAIRKC RVQLIKNG+++ AF P + +N+I+E+DEV+I G G G A GDIPGVR+KVV V S+ L + ++EK Sbjct: 2 AGSKSPKGEFAGRKLLLKRKASRWHHYKYVNKALSLKLKADPLEGAPMGRGIVIEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVLVGKNSIRELVRGRQEK 144
BLAST of CK935508 vs. ExPASy Swiss-Prot
Match: RS12_METM5 (30S ribosomal protein S12P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps12p PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.941e-30 Identity = 70/143 (48.95%), Postives = 93/143 (65.03%), Query Frame = 2 Query: 92 ANMRKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 514 A + +G AGRKL R+ RW Y L + K P G+ +GIV+EK+G+EAKQPNSAIRKC RVQLIKNG+++ AF P + +N+I+E+DEV+I G G G A GDIPGVR+KVV V S+ L + ++EK Sbjct: 2 AGSKSPKGEFAGRKLLLKRKASRWHHYKYVNKALSLKLKADPLEGAPMGRGIVVEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVMVGKNSIRELVRGRQEK 144
BLAST of CK935508 vs. ExPASy Swiss-Prot
Match: RS12_METLZ (30S ribosomal protein S12P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps12p PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 6.453e-30 Identity = 71/139 (51.08%), Postives = 92/139 (66.19%), Query Frame = 2 Query: 110 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 520 +G A R L ++ RW+D Y + L + K P G+ + IVLEK+G+EAKQPNSAIRKC RVQLIKNG+++ AF DG +N+I+E+DEV I G GR G ++GDIPGVRF V V+GVSL L + EK R Sbjct: 3 QGKFAARNLVRTAKKFRWSDSVYSRRALKLKLKADPLEGAPIGRAIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVTICGIGGRAGRSMGDIPGVRFVVSGVNGVSLNELVIGRAEKAR 141
BLAST of CK935508 vs. ExPASy Swiss-Prot
Match: RS12_METJA (30S ribosomal protein S12P OS=Methanocaldococcus jannaschii GN=rps12p PE=3 SV=2) HSP 1 Score: 130.183 bits (326), Expect = 1.101e-29 Identity = 70/141 (49.65%), Postives = 96/141 (68.09%), Query Frame = 2 Query: 101 RKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG--RKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 514 + RG AGRKL+ R+ RW D +Y + L + K P G+ A+GIV+EK+G+EAKQPNSAIRKC RVQLIKNG+ + AF P + +N+I+E+DEV+I G G + A GDIPGV++KV+ V SL L + ++EK Sbjct: 5 KSPRGEFAGRKLRLKRKWCRWHDYNYVRRVLKLKEKYDPLEGAPMARGIVIEKVGLEAKQPNSAIRKCVRVQLIKNGRVVTAFCPGNHAINFIDEHDEVIIEGIGGPKGPRAKGDIPGVKYKVIMVGRNSLRELVRGRQEK 145
BLAST of CK935508 vs. ExPASy Swiss-Prot
Match: RS12_METVS (30S ribosomal protein S12P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps12p PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.877e-29 Identity = 68/140 (48.57%), Postives = 92/140 (65.71%), Query Frame = 2 Query: 101 RKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 514 + +G AGRKL R+ RW Y LG + K P G+ +GIV+EK+G+EAKQPNSAIRKC +VQLIKNG+ + AF P + +N+I+E+DEV+I G G G A GDIPGVR+KV+ V S+ L + ++EK Sbjct: 5 KSPKGEFAGRKLLLKRKATRWQHYKYVNRELGLKVKADPLGGAPMGRGIVVEKVGLEAKQPNSAIRKCVKVQLIKNGRVVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVLMVGKNSIRELVRGRQEK 144
BLAST of CK935508 vs. ExPASy Swiss-Prot
Match: RS12_META3 (30S ribosomal protein S12P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps12p PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 3.202e-29 Identity = 68/142 (47.89%), Postives = 91/142 (64.08%), Query Frame = 2 Query: 101 RKTRGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 520 + +G AGRK+ R+ RW Y L E P G+ +GIV+EK+G+EAKQPNSAIRKC +VQLIKNG+ + AF P + +N+I+E+DEV+I G G G A GDIPGVRF+VV V S+ L + ++EK R Sbjct: 5 KSPKGEFAGRKIVLKRKESRWHHYKYVNKALKLKEKSDPLGGAPMGRGIVVEKVGLEAKQPNSAIRKCVKVQLIKNGRVVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRFRVVMVGKNSMRELVRGRQEKVR 146
BLAST of CK935508 vs. ExPASy Swiss-Prot
Match: RS12_NANEQ (30S ribosomal protein S12P OS=Nanoarchaeum equitans GN=rps12p PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.345e-27 Identity = 71/138 (51.45%), Postives = 88/138 (63.77%), Query Frame = 2 Query: 113 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 520 G+ AGRKLK R++ RW D Y + L + K P G+ A GIVLEK +E +QPNS K RVQL KNGK + AF P DG + I+E+DEVLI G GR+G ++GDIPGVR+KV V+G L L K K EK R Sbjct: 5 GLFAGRKLKKIRKKFRWNDYRYVRRMLRIKEKYDPLEGAPMASGIVLEKTDVERRQPNSGRIKVVRVQLKKNGKVVTAFTPGDGAIKVIDEHDEVLIVGIRGRQGRSMGDIPGVRYKVYLVNGQPLELLRKGKIEKAR 142 The following BLAST results are available for this feature:
BLAST of CK935508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK935508 ID=CK935508; Name=CK935508; organism=Citrus sinensis; type=EST; length=718bpback to top |