CK935514

Overview
NameCK935514
Unique NameCK935514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935514 vs. ExPASy Swiss-Prot
Match: RL101_ORYSJ (60S ribosomal protein L10-1 OS=Oryza sativa subsp. japonica GN=SC34 PE=2 SV=1)

HSP 1 Score: 397.897 bits (1021), Expect = 3.794e-110
Identity = 190/219 (86.76%), Postives = 203/219 (92.69%), Query Frame = 3
Query:   57 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVGRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRAFLHAT 713
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFP+CVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK+SN+ HA+EALRRAKFKFPGRQKII  RKWGFTKF+R +Y++ K+E RI+ DGVNA+LLG HG LA R PG+AFL  T
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRLAKRAPGKAFLAET 219          
BLAST of CK935514 vs. ExPASy Swiss-Prot
Match: RL101_ORYSI (60S ribosomal protein L10-1 OS=Oryza sativa subsp. indica GN=SC34 PE=2 SV=2)

HSP 1 Score: 397.897 bits (1021), Expect = 3.794e-110
Identity = 190/219 (86.76%), Postives = 203/219 (92.69%), Query Frame = 3
Query:   57 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVGRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRAFLHAT 713
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFP+CVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK+SN+ HA+EALRRAKFKFPGRQKII  RKWGFTKF+R +Y++ K+E RI+ DGVNA+LLG HG LA R PG+AFL  T
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRLAKRAPGKAFLAET 219          
BLAST of CK935514 vs. ExPASy Swiss-Prot
Match: RL10_DROME (60S ribosomal protein L10 OS=Drosophila melanogaster GN=Qm PE=2 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 4.670e-84
Identity = 147/218 (67.43%), Postives = 171/218 (78.44%), Query Frame = 3
Query:   57 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVGRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRAFLHA 710
            MGRRPARCYR  KNKPYPKSRFCRGVPDPKIRI+D+G KK  V++FP CVHLVS E E +SSEALEA RI CNKY+ K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR  D       EALRRAKFKFPGRQKI V +KWGFTK+ R  Y   + +NR+ PDG N K    HGP+A+ +  +  ++A
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERERYEELRDDNRLEPDGCNVKYRPEHGPIAAWEKAQRDVYA 218          
BLAST of CK935514 vs. ExPASy Swiss-Prot
Match: RL10_SHEEP (60S ribosomal protein L10 OS=Ovis aries GN=RPL10 PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 7.456e-82
Identity = 145/206 (70.39%), Postives = 164/206 (79.61%), Query Frame = 3
Query:   57 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVGRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPL 674
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI + +KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of CK935514 vs. ExPASy Swiss-Prot
Match: RL10_PIG (60S ribosomal protein L10 OS=Sus scrofa GN=RPL10 PE=2 SV=3)

HSP 1 Score: 303.908 bits (777), Expect = 7.456e-82
Identity = 145/206 (70.39%), Postives = 164/206 (79.61%), Query Frame = 3
Query:   57 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVGRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPL 674
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI + +KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of CK935514 vs. ExPASy Swiss-Prot
Match: RL10_BOVIN (60S ribosomal protein L10 OS=Bos taurus GN=RPL10 PE=2 SV=4)

HSP 1 Score: 303.908 bits (777), Expect = 7.456e-82
Identity = 145/206 (70.39%), Postives = 164/206 (79.61%), Query Frame = 3
Query:   57 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVGRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPL 674
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI + +KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of CK935514 vs. ExPASy Swiss-Prot
Match: RL10L_MACFA (60S ribosomal protein L10-like OS=Macaca fascicularis GN=RPL10L PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 7.456e-82
Identity = 144/206 (69.90%), Postives = 165/206 (80.10%), Query Frame = 3
Query:   57 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVGRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPL 674
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  G+D FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI + +KWGFTKF+  ++    ++ R++PDG   K +  HGPL
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAKKRLIPDGCGVKYVPSHGPL 206          
BLAST of CK935514 vs. ExPASy Swiss-Prot
Match: RL10_RAT (60S ribosomal protein L10 OS=Rattus norvegicus GN=Rpl10 PE=1 SV=3)

HSP 1 Score: 303.138 bits (775), Expect = 1.272e-81
Identity = 145/206 (70.39%), Postives = 164/206 (79.61%), Query Frame = 3
Query:   57 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVGRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPL 674
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI + +KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of CK935514 vs. ExPASy Swiss-Prot
Match: RL10_PAPAN (60S ribosomal protein L10 OS=Papio anubis GN=RPL10 PE=3 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 1.272e-81
Identity = 145/206 (70.39%), Postives = 164/206 (79.61%), Query Frame = 3
Query:   57 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVGRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPL 674
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI + +KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of CK935514 vs. ExPASy Swiss-Prot
Match: RL10_MOUSE (60S ribosomal protein L10 OS=Mus musculus GN=Rpl10 PE=2 SV=3)

HSP 1 Score: 303.138 bits (775), Expect = 1.272e-81
Identity = 145/206 (70.39%), Postives = 164/206 (79.61%), Query Frame = 3
Query:   57 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVGRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPL 674
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI + +KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
The following BLAST results are available for this feature:
BLAST of CK935514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL101_ORYSJ3.794e-11086.7660S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL101_ORYSI3.794e-11086.7660S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL10_DROME4.670e-8467.4360S ribosomal protein L10 OS=Drosophila melanogast... [more]
RL10_SHEEP7.456e-8270.3960S ribosomal protein L10 OS=Ovis aries GN=RPL10 P... [more]
RL10_PIG7.456e-8270.3960S ribosomal protein L10 OS=Sus scrofa GN=RPL10 P... [more]
RL10_BOVIN7.456e-8270.3960S ribosomal protein L10 OS=Bos taurus GN=RPL10 P... [more]
RL10L_MACFA7.456e-8269.9060S ribosomal protein L10-like OS=Macaca fascicula... [more]
RL10_RAT1.272e-8170.3960S ribosomal protein L10 OS=Rattus norvegicus GN=... [more]
RL10_PAPAN1.272e-8170.3960S ribosomal protein L10 OS=Papio anubis GN=RPL10... [more]
RL10_MOUSE1.272e-8170.3960S ribosomal protein L10 OS=Mus musculus GN=Rpl10... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_G02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935514 ID=CK935514; Name=CK935514; organism=Citrus sinensis; type=EST; length=858bp
GGGGACTTTTCTTGGGTTTCTGGTTTAGTTGCTGAAAACCTACCAGAGCT
TTCGCCATGGGAAGAAGACCTGCAAGGTGTTATCGCCAGATCAAAAATAA
GCCGTATCCGAAATCACGCTTTTGTCGTGGTGTGCCTGATCCCAAGATCA
GGATCTATGATGTTGGAATGAAGAAGAAAGGGGTTGATGAATTCCCTTTC
TGTGTACACTTGGTGTCTTGGGAAAAGGAGAACGTATCTAGTGAAGCTCT
TGAGGCTGCTCGAATTGCTTGCAACAAATATATGGCCAAGTTTGCCGGGA
AAGATGCTTTCCATTTGCGAGTCCGTGTTCACCCATTCCATGTCTTGCGT
ATCAACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAAACTGGTAT
GAGGGGTGCTTTCGGTAAACCACAGGGCACTTGTGCTAGAGTTGCCATTG
GACAGGTCCTCCTGTCAGTTCGCTGCAAGGATAGCAATAGTCTTCATGCT
CAAGAGGCTCTTCGTCGTGCAAAGTTCAAGTTTCCTGGTCGCCAAAAAAT
CATTGTCGGCAGAAAGTGGGGTTTCACCAAGTTTAGCCGCAGTGATTATT
TGAGGTTCAAGTCAGAGAACCGTATTGTGCCCGATGGTGTTAATGCAAAG
CTTCTTGGATGTCATGGACCCTTGGCGAGTCGCCAACCAGGAAGAGCTTT
CTTACATGCCACAGCTTAGGATTTGTCGCCTGAGCACAACTTTTTGAGAG
AATTTTCCAATTGTAGGCATTTAGTACTGTGTCAAGCACTTGTTGCAATG
CTTATGTTATCTTTATTCCATTTTTTATCGCACACTTGGATTTTTCACTT
TTAAGTTT
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