CK935520

Overview
NameCK935520
Unique NameCK935520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL3_CAEEL (ADP-ribosylation factor-like protein 3 OS=Caenorhabditis elegans GN=arl-3 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.689e-25
Identity = 56/139 (40.29%), Postives = 83/139 (59.71%), Query Frame = 3
Query:   15 EVLSTVPTIGFNVEKVQYKNVI-FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 428
            +V    PT GFNV+ V     I   VWD+GGQ  +RP W +Y+ N D LI+V+DS D++R  +   E   ++ +  +    +L+FANKQD+  A +  E+   L L  L++R WHIQ   ALK +G+ +G+ W+AS LK
Sbjct:   41 DVQHVTPTKGFNVKTVAAMGDIRLNVWDIGGQRSIRPYWSNYYENIDTLIFVIDSNDKKRFDEMNIELGELLDEEKLRKVPVLIFANKQDLVTAASSEEITRKLNLDLLRDRTWHIQACSALKNEGINDGITWVASNLK 179          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL4D_PONAB (ADP-ribosylation factor-like protein 4D OS=Pongo abelii GN=ARL4D PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.653e-24
Identity = 66/150 (44.00%), Postives = 90/150 (60.00%), Query Frame = 3
Query:   15 EVLSTVPTIGFNVEKVQY-----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRK-WHIQGTCALKGDGLYEGLDWL-ASTLKEMRAA 443
            E + +VPT GFN EK++      + + F VWDVGGQEKLRPLWR Y   TDGL++VVD+ + ER+ +AK E   I +        +LV ANKQD  GA++  EV + L + +L      H+QG  A+ G GL +GL+ L    LK  +AA
Sbjct:   45 EFVQSVPTKGFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRISRASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQGCSAVDGLGLQQGLERLYEMILKRKKAA 194          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL4D_HUMAN (ADP-ribosylation factor-like protein 4D OS=Homo sapiens GN=ARL4D PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.653e-24
Identity = 66/150 (44.00%), Postives = 90/150 (60.00%), Query Frame = 3
Query:   15 EVLSTVPTIGFNVEKVQY-----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRK-WHIQGTCALKGDGLYEGLDWL-ASTLKEMRAA 443
            E + +VPT GFN EK++      + + F VWDVGGQEKLRPLWR Y   TDGL++VVD+ + ER+ +AK E   I +        +LV ANKQD  GA++  EV + L + +L      H+QG  A+ G GL +GL+ L    LK  +AA
Sbjct:   45 EFVQSVPTKGFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRISRASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQGCSAVDGLGLQQGLERLYEMILKRKKAA 194          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL4D_BOVIN (ADP-ribosylation factor-like protein 4D OS=Bos taurus GN=ARL4D PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.819e-24
Identity = 65/150 (43.33%), Postives = 89/150 (59.33%), Query Frame = 3
Query:   15 EVLSTVPTIGFNVEKVQY-----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRK-WHIQGTCALKGDGLYEGLDWL-ASTLKEMRAA 443
            E + ++PT GFN EK++      + + F VWDVGGQEKLRPLWR Y   TDGL++VVD+ + ER+ +AK E   I +        +LV ANKQD  GA++  EV + L + +L      H+QG  A+ G GL  GL+ L    LK  +AA
Sbjct:   44 EFVQSIPTKGFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRISRASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELATATLTHVQGCSAVDGLGLQPGLERLYEMILKRKKAA 193          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL_SCHPO (ADP-ribosylation factor-like protein alp41 OS=Schizosaccharomyces pombe GN=alp41 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.682e-24
Identity = 51/141 (36.17%), Postives = 87/141 (61.70%), Query Frame = 3
Query:   15 EVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 437
            +V    PT GF +  ++ + + FT+WD+GGQ+ LR  W++YF +T+ +I+VVDSLD  R+ + +   Q ++ +  +L + ILV ANK D+ GA++  E+ + L +   K+  W I    AL G  + + + WLA+ LKE++
Sbjct:   40 DVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWLANDLKEIK 180          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL4D_MOUSE (ADP-ribosylation factor-like protein 4D OS=Mus musculus GN=Arl4d PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.682e-24
Identity = 64/149 (42.95%), Postives = 88/149 (59.06%), Query Frame = 3
Query:   15 EVLSTVPTIGFNVEKVQY-----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRK-WHIQGTCALKGDGLYEGLDWLASTLKEMRAA 443
            E + +VPT GFN EK++      + + F VWDVGGQEKLRPLWR Y   TDGL++VVDS + ER+ +AK E   I K        +LV ANKQD  GA++  EV + L + +L      H+Q   A+ G GL +GL+ L   + + + A
Sbjct:   45 EFVQSVPTKGFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDSAEIERLEEAKVELHRISKASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQACSAVDGLGLQQGLERLYEMILKRKKA 193          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL11_BOVIN (ADP-ribosylation factor-like protein 11 OS=Bos taurus GN=ARL11 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.827e-23
Identity = 56/139 (40.29%), Postives = 87/139 (62.59%), Query Frame = 3
Query:   15 EVLSTVPTIGFNVEKVQYK-NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 428
            +++ T+PT+GFNVE ++   +V  T+WDVGGQ +LR  W+ +   TD L+YV+DS D  R+ +A  E + ++ DP + +  +LV ANKQ++  A++  E+ + LGL     R W ++   AL G GL E L+ L S LK
Sbjct:   36 QLVETLPTVGFNVEPLEEPGHVSLTLWDVGGQSQLRASWKDHLEGTDILVYVLDSTDEARLPEAVAELREVLDDPSVASVPLLVLANKQEVPQALSLPEIRDRLGLQGFLGRSWDLRACSALTGAGLPEALESLRSLLK 174          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL5C_HUMAN (Putative ADP-ribosylation factor-like protein 5C OS=Homo sapiens GN=ARL5C PE=2 SV=4)

HSP 1 Score: 109.383 bits (272), Expect = 2.386e-23
Identity = 52/135 (38.52%), Postives = 82/135 (60.74%), Query Frame = 3
Query:   15 EVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 419
            EV+   PTIG NVE++      F +WD+   E L  +W  Y++NT+ +I V+DS DR+R+   ++E   ++    + ++ +L+FANKQD+K +M  +E+   L L  +K+  WHIQG CAL  +GL   L W+ S
Sbjct:   40 EVVHMCPTIGSNVEEIILPKTHFFMWDIVRPEALSFIWNTYYSNTEFIILVIDSTDRDRLLTTREELYKMLAHEALQDASVLIFANKQDVKDSMRMVEISHFLTLSTIKDHSWHIQGCCALTREGLPARLQWMES 174          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL11_MOUSE (ADP-ribosylation factor-like protein 11 OS=Mus musculus GN=Arl11 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.386e-23
Identity = 55/139 (39.57%), Postives = 82/139 (58.99%), Query Frame = 3
Query:   15 EVLSTVPTIGFNVEKVQYK-NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 428
            +++ T+PT+GFNVE ++   +V  T+WD+GGQ +LR  W+ Y    D L+YV+DS D  R+ +A  E + +++DP M     LV ANKQ+  GA+  +E+   LGL   +   W ++   AL G GL E L  L   LK
Sbjct:   36 QLVDTLPTVGFNVEPLEAPGHVSLTLWDIGGQTQLRATWKDYLEGIDLLVYVLDSTDEARLPEAVAELKEVLEDPNMAGVPFLVLANKQEAPGALPLLEIRNRLGLEGFQKHCWELRACSALTGQGLQEALQSLLHLLK 174          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL11_HUMAN (ADP-ribosylation factor-like protein 11 OS=Homo sapiens GN=ARL11 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.446e-22
Identity = 55/139 (39.57%), Postives = 82/139 (58.99%), Query Frame = 3
Query:   15 EVLSTVPTIGFNVEKVQYK-NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 428
            +++ T+PT+GFNVE ++   +V  T+WDVGGQ  LR  W+ Y   TD L+YV+DS D  R+ ++  E   ++ DP M     LV ANKQ+   A+  +++   L L   ++  W ++G  AL G+GL E L  L S LK
Sbjct:   36 QLVETLPTVGFNVEPLKAPGHVSLTLWDVGGQAPLRASWKDYLEGTDILVYVLDSTDEARLPESAAELTEVLNDPNMAGVPFLVLANKQEAPDALPLLKIRNRLSLERFQDHCWELRGCSALTGEGLPEALQSLWSLLK 174          
The following BLAST results are available for this feature:
BLAST of CK935520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
ARL3_CAEEL9.689e-2540.29ADP-ribosylation factor-like protein 3 OS=Caenorha... [more]
ARL4D_PONAB1.653e-2444.00ADP-ribosylation factor-like protein 4D OS=Pongo a... [more]
ARL4D_HUMAN1.653e-2444.00ADP-ribosylation factor-like protein 4D OS=Homo sa... [more]
ARL4D_BOVIN2.819e-2443.33ADP-ribosylation factor-like protein 4D OS=Bos tau... [more]
ARL_SCHPO3.682e-2436.17ADP-ribosylation factor-like protein alp41 OS=Schi... [more]
ARL4D_MOUSE3.682e-2442.95ADP-ribosylation factor-like protein 4D OS=Mus mus... [more]
ARL11_BOVIN1.827e-2340.29ADP-ribosylation factor-like protein 11 OS=Bos tau... [more]
ARL5C_HUMAN2.386e-2338.52Putative ADP-ribosylation factor-like protein 5C O... [more]
ARL11_MOUSE2.386e-2339.57ADP-ribosylation factor-like protein 11 OS=Mus mus... [more]
ARL11_HUMAN3.446e-2239.57ADP-ribosylation factor-like protein 11 OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_G08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935520 ID=CK935520; Name=CK935520; organism=Citrus sinensis; type=EST; length=795bp
GGGTGCACATTGGTGAAGTTTTATCTACTGTTCCTACTATTGGTTTTAAT
GTCGAGAAAGTTCAGTATAAGAATGTCATATTCACTGTTTGGGATGTTGG
CGGACAAGAGAAATTGAGGCCACTATGGAGGCATTATTTTAATAACACTG
ATGGACTGATCTATGTTGTTGACTCCTTGGACCGGGAGAGAATTGGTAAA
GCAAAGCAAGAATTTCAGGCCATTATCAAAGATCCTTTTATGCTGAACAG
TGTCATTTTGGTGTTTGCCAATAAACAGGACATGAAAGGAGCAATGACCC
CAATGGAAGTATGTGAAGGATTAGGTCTCTTTGATCTCAAGAACAGGAAA
TGGCATATTCAAGGGACTTGTGCACTTAAAGGAGATGGACTTTACGAAGG
CTTGGATTGGTTGGCTTCAACACTTAAGGAGATGAGAGCTGCTGGATACT
CTTCAGTGGGCACCTCATCATTCTAGGGATCCAGGTTTACACGAGAGGAT
TTGAGGTAGATTGAATGATGAAACTCCTGAGTCATGCGTTTACTGGAGGG
AAGTCCCGTCTGTAATCAAATTCTTTTGGGTTGTATGTATCTAAGGCCAA
TGAAGCTTTTGATAGGGTGCTTACATTTGACCGTACTTGTTTGTGTGACT
TCCTGTAATGTATATTGAAGTGAACTGGACTCGGGGTTCAATACATGTCC
TTTATCCTCCTAAGATTCAAAATATGAGTTAAATCGCACACGCACGGGCA
CAGACACGTGTGCTTACCAGTGTGGTGGTGTAGGATAATTGAATC
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