CK935520

Overview
NameCK935520
Unique NameCK935520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL3_PONAB (ADP-ribosylation factor-like protein 3 OS=Pongo abelii GN=ARL3 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.488e-21
Identity = 47/137 (34.31%), Postives = 77/137 (56.20%), Query Frame = 3
Query:   15 EVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 425
            ++    PT GFN++ VQ +     VWD+GGQ K+RP W++YF NTD ++ + + L+ E++                    +L+FANKQD+  A    E+ EGL L  +++R W IQ   AL G+G+ +G++W+   +
Sbjct:   41 DISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWKNYFENTD-ILELAELLEEEKLSCVP----------------VLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 160          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL11_RAT (ADP-ribosylation factor-like protein 11 OS=Rattus norvegicus GN=Arl11 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.448e-20
Identity = 51/138 (36.96%), Postives = 79/138 (57.25%), Query Frame = 3
Query:   18 VLSTVPTIGFNVEKVQYK-NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 428
            ++ T+PT+GFNVE ++   +V  T+WD+GGQ +LR  W+ Y    D L+YV+DS D  R+ +A  E + +++DP M     LV ANKQ+   A+  +E+   L L   ++  W ++   AL G GL E    L   L+
Sbjct:   35 LVDTLPTVGFNVEPLEAPGHVSLTLWDIGGQTQLRATWKDYLEGIDLLVYVLDSTDEARLPEAVAELEEVLEDPNMAGVPFLVLANKQEAPDALPLLEIRNRLDLERFQDHCWELRACSALTGQGLQEARQSLLHLLR 172          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL6_CAEEL (ADP-ribosylation factor-like protein 6 OS=Caenorhabditis elegans GN=arl-6 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.657e-19
Identity = 50/134 (37.31%), Postives = 76/134 (56.72%), Query Frame = 3
Query:   30 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAII--KDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 425
            VPT+G  V     +N+ F  +D+ GQ K R  W  YF+++ G+I+V+DS DR R+   K E   ++  KD       I++ ANK D+ GAMT  ++   LGL   ++  W I  TCAL GDGL + +  L++ +
Sbjct:   48 VPTVGHVVTNFSTQNLSFHAFDMAGQMKYRSTWESYFHSSQGVIFVLDSSDRLRMELLKDELMMVMEHKDVVSRGIPIVILANKMDIPGAMTASDITVALGLNLYRSGTWSIHSTCALTGDGLDKAMQQLSAEI 181          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL6_CAEBR (ADP-ribosylation factor-like protein 6 OS=Caenorhabditis briggsae GN=arl-6 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.657e-19
Identity = 50/136 (36.76%), Postives = 78/136 (57.35%), Query Frame = 3
Query:   30 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAII--KDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 431
            VPT+G  V     +N+ F  +D+ GQ K R  W  YF+++ G+I+V+DS DR R+   K E   ++  KD       +++ ANK D+ GAMT  ++   LGL   ++  W I  TCAL GDGL + +  L+S +++
Sbjct:   48 VPTVGHVVTNFSTQNLSFHAFDMAGQMKYRSTWESYFHSSQGVIFVLDSSDRVRMELLKDELWLVLDHKDVASRGIPVVILANKMDIPGAMTCADITAALGLNLHRSGTWSIHSTCALTGDGLDKAMQQLSSEIQK 183          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL8_DICDI (ADP-ribosylation factor-like protein 8 OS=Dictyostelium discoideum GN=arl8 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.311e-18
Identity = 47/134 (35.07%), Postives = 72/134 (53.73%), Query Frame = 3
Query:   12 GEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 413
            G +  T+PTIGFN++KV   NV   +WD+GGQ + R +W  Y    + +++VVDS DRE+  ++KQ  Q +I  P +    +LV ANK D+  +    E+ + L L  +  R+       A     +   LDWL
Sbjct:   43 GFIEDTIPTIGFNMKKVTKGNVTIKLWDIGGQPRFRSMWERYCRGVNAIVFVVDSADREKFEQSKQALQDLINKPPLAKIPLLVVANKNDLPNSAGVDEMIQNLDLRGIVGREVCCYSISAKNSVNIDITLDWL 176          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL8A_MOUSE (ADP-ribosylation factor-like protein 8A OS=Mus musculus GN=Arl8a PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.019e-18
Identity = 42/137 (30.66%), Postives = 73/137 (53.28%), Query Frame = 3
Query:   30 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRA 440
            +PT+GFN+ K+   NV   +WD+GGQ + R +W  Y      ++Y+VD+ D+E+I  +K E   ++  P +    +LV  NK+D+ GA+   E+ E + L  +++R+         + D +   L WL    K  R+
Sbjct:   50 IPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLAGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRRS 186          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL8A_HUMAN (ADP-ribosylation factor-like protein 8A OS=Homo sapiens GN=ARL8A PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.019e-18
Identity = 42/137 (30.66%), Postives = 73/137 (53.28%), Query Frame = 3
Query:   30 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRA 440
            +PT+GFN+ K+   NV   +WD+GGQ + R +W  Y      ++Y+VD+ D+E+I  +K E   ++  P +    +LV  NK+D+ GA+   E+ E + L  +++R+         + D +   L WL    K  R+
Sbjct:   50 IPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRRS 186          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL8A_CHICK (ADP-ribosylation factor-like protein 8A OS=Gallus gallus GN=ARL8A PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.019e-18
Identity = 42/137 (30.66%), Postives = 73/137 (53.28%), Query Frame = 3
Query:   30 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRA 440
            +PT+GFN+ K+   NV   +WD+GGQ + R +W  Y      ++Y+VD+ D+E+I  +K E   ++  P +    +LV  NK+D+ GA+   E+ E + L  +++R+         + D +   L WL    K  R+
Sbjct:   50 IPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRRS 186          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL8B_RAT (ADP-ribosylation factor-like protein 8B OS=Rattus norvegicus GN=Arl8b PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.147e-17
Identity = 40/137 (29.20%), Postives = 73/137 (53.28%), Query Frame = 3
Query:   30 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRA 440
            +PT+GFN+ KV   NV   +WD+GGQ + R +W  Y    + ++Y++D+ DRE+I  ++ E   ++  P +    +LV  NK+D+  A+   ++ E + L  +++R+         + D +   L WL    K  R+
Sbjct:   50 IPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRRS 186          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL8B_MOUSE (ADP-ribosylation factor-like protein 8B OS=Mus musculus GN=Arl8b PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.147e-17
Identity = 40/137 (29.20%), Postives = 73/137 (53.28%), Query Frame = 3
Query:   30 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRA 440
            +PT+GFN+ KV   NV   +WD+GGQ + R +W  Y    + ++Y++D+ DRE+I  ++ E   ++  P +    +LV  NK+D+  A+   ++ E + L  +++R+         + D +   L WL    K  R+
Sbjct:   50 IPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRRS 186          
The following BLAST results are available for this feature:
BLAST of CK935520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
ARL3_PONAB8.488e-2134.31ADP-ribosylation factor-like protein 3 OS=Pongo ab... [more]
ARL11_RAT1.448e-2036.96ADP-ribosylation factor-like protein 11 OS=Rattus ... [more]
ARL6_CAEEL4.657e-1937.31ADP-ribosylation factor-like protein 6 OS=Caenorha... [more]
ARL6_CAEBR4.657e-1936.76ADP-ribosylation factor-like protein 6 OS=Caenorha... [more]
ARL8_DICDI2.311e-1835.07ADP-ribosylation factor-like protein 8 OS=Dictyost... [more]
ARL8A_MOUSE3.019e-1830.66ADP-ribosylation factor-like protein 8A OS=Mus mus... [more]
ARL8A_HUMAN3.019e-1830.66ADP-ribosylation factor-like protein 8A OS=Homo sa... [more]
ARL8A_CHICK3.019e-1830.66ADP-ribosylation factor-like protein 8A OS=Gallus ... [more]
ARL8B_RAT1.147e-1729.20ADP-ribosylation factor-like protein 8B OS=Rattus ... [more]
ARL8B_MOUSE1.147e-1729.20ADP-ribosylation factor-like protein 8B OS=Mus mus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_G08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935520 ID=CK935520; Name=CK935520; organism=Citrus sinensis; type=EST; length=795bp
GGGTGCACATTGGTGAAGTTTTATCTACTGTTCCTACTATTGGTTTTAAT
GTCGAGAAAGTTCAGTATAAGAATGTCATATTCACTGTTTGGGATGTTGG
CGGACAAGAGAAATTGAGGCCACTATGGAGGCATTATTTTAATAACACTG
ATGGACTGATCTATGTTGTTGACTCCTTGGACCGGGAGAGAATTGGTAAA
GCAAAGCAAGAATTTCAGGCCATTATCAAAGATCCTTTTATGCTGAACAG
TGTCATTTTGGTGTTTGCCAATAAACAGGACATGAAAGGAGCAATGACCC
CAATGGAAGTATGTGAAGGATTAGGTCTCTTTGATCTCAAGAACAGGAAA
TGGCATATTCAAGGGACTTGTGCACTTAAAGGAGATGGACTTTACGAAGG
CTTGGATTGGTTGGCTTCAACACTTAAGGAGATGAGAGCTGCTGGATACT
CTTCAGTGGGCACCTCATCATTCTAGGGATCCAGGTTTACACGAGAGGAT
TTGAGGTAGATTGAATGATGAAACTCCTGAGTCATGCGTTTACTGGAGGG
AAGTCCCGTCTGTAATCAAATTCTTTTGGGTTGTATGTATCTAAGGCCAA
TGAAGCTTTTGATAGGGTGCTTACATTTGACCGTACTTGTTTGTGTGACT
TCCTGTAATGTATATTGAAGTGAACTGGACTCGGGGTTCAATACATGTCC
TTTATCCTCCTAAGATTCAAAATATGAGTTAAATCGCACACGCACGGGCA
CAGACACGTGTGCTTACCAGTGTGGTGGTGTAGGATAATTGAATC
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