CK935520

Overview
NameCK935520
Unique NameCK935520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARFRP_RAT (ADP-ribosylation factor-related protein 1 OS=Rattus norvegicus GN=Arfrp1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.690e-16
Identity = 43/128 (33.59%), Postives = 69/128 (53.91%), Query Frame = 3
Query:   36 TIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLK--NRKWHIQGTCALKGDGLYEGLDWL 413
            T+G N+  V         WD+GGQE+L+ LW  Y+    G+IYV+DS D ER+ ++K+ F+ ++    +    ILV ANKQD++  ++  ++         K   R    Q   AL G G+ EG++W+
Sbjct:   56 TVGLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVSSEALDGVPILVLANKQDVETCLSIPDIKTAFSDCTCKIGRRDCLTQACSALTGKGVREGIEWM 183          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARFRP_MOUSE (ADP-ribosylation factor-related protein 1 OS=Mus musculus GN=Arfrp1 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.690e-16
Identity = 43/128 (33.59%), Postives = 69/128 (53.91%), Query Frame = 3
Query:   36 TIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLK--NRKWHIQGTCALKGDGLYEGLDWL 413
            T+G N+  V         WD+GGQE+L+ LW  Y+    G+IYV+DS D ER+ ++K+ F+ ++    +    ILV ANKQD++  ++  ++         K   R    Q   AL G G+ EG++W+
Sbjct:   56 TVGLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVSSEALDGVPILVLANKQDVETCLSIPDIKTAFSDCTCKIGRRDCLTQACSALTGKGVREGIEWM 183          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARFRP_BOVIN (ADP-ribosylation factor-related protein 1 OS=Bos taurus GN=ARFRP1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.820e-16
Identity = 43/128 (33.59%), Postives = 69/128 (53.91%), Query Frame = 3
Query:   36 TIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLG--LFDLKNRKWHIQGTCALKGDGLYEGLDWL 413
            T+G N+  V         WD+GGQE+L+ LW  Y+    G+IYV+DS D ER+ ++KQ F+ ++    +    ILV ANKQD++  ++  ++          +  R    Q   AL G G+ EG++W+
Sbjct:   56 TVGLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKQAFEKMVTSEALDGVPILVLANKQDVETCLSIPDIKTAFSDCASKIGRRDCLTQACSALTGKGVREGIEWM 183          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: AR13B_DANRE (ADP-ribosylation factor-like protein 13B OS=Danio rerio GN=arl13b PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.074e-15
Identity = 44/144 (30.56%), Postives = 79/144 (54.86%), Query Frame = 3
Query:   21 LSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRK---WHIQGTCALKGDG------LYEGLDWLASTL 425
            L   PT+GF+   ++      T++D+GG +++R +W++Y++ + G+++VVDS D +RI + +     +++ P +    +LV ANKQD  GAM   ++ E L L  L N       I+   A+ G G      +  GL+WL + +
Sbjct:   47 LDVAPTVGFSKVDLKQGKFEVTIFDLGGGKRIRGIWKNYYSESYGVVFVVDSSDVQRIQETRDTMAEVLRHPRIAGKPVLVLANKQDQDGAMAEADIIETLSLEKLVNENKCLCQIEPCSAVLGYGKKVDKSIKNGLNWLLNNI 190          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL3_YEAST (ADP-ribosylation factor-like protein 3 OS=Saccharomyces cerevisiae GN=ARL3 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.392e-15
Identity = 44/135 (32.59%), Postives = 72/135 (53.33%), Query Frame = 3
Query:   33 PTIGFNVEKVQYKNV-IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF--DLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 428
            PT+G NV  +   +  I   WDVGGQE LR +W  Y++   G+I++VDS DRER+ +     Q+++ D  +    IL+ ANKQD +  M   ++ E        +  R   +    AL G+G+ + ++W+   L+
Sbjct:   53 PTVGQNVATIPVDSKQILKFWDVGGQESLRSMWSEYYSLCHGIIFIVDSSDRERLDECSTTLQSVVMDEEIEGVPILMLANKQDRQDRMEVQDIKEVFNKIAEHISARDSRVLPISALTGEGVKDAIEWMIVRLE 187          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: AR13B_MOUSE (ADP-ribosylation factor-like protein 13B OS=Mus musculus GN=Arl13b PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.090e-15
Identity = 46/136 (33.82%), Postives = 77/136 (56.62%), Query Frame = 3
Query:   33 PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRK---WHIQGTCALKGDG------LYEGLDWL 413
            PT+GF+   ++      T++D+GG +++R +W++Y+  + G+I+VVDS D ER+ + K+    +++ P +    ILV ANKQD +GA+   +V E L L  L N       I+   A+ G G      + +GL WL
Sbjct:   51 PTVGFSKIDLRQGKFQVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWL 186          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: AR13B_HUMAN (ADP-ribosylation factor-like protein 13B OS=Homo sapiens GN=ARL13B PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.550e-14
Identity = 46/136 (33.82%), Postives = 76/136 (55.88%), Query Frame = 3
Query:   33 PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRK---WHIQGTCALKGDG------LYEGLDWL 413
            PT+GF+   ++      T++D+GG  ++R +W++Y+  + G+I+VVDS D ER+ + K+    +++ P +    ILV ANKQD +GA+   +V E L L  L N       I+   A+ G G      + +GL WL
Sbjct:   51 PTVGFSKINLRQGKFEVTIFDLGGGIRIRGIWKNYYAESYGVIFVVDSSDEERMEETKEAMSEMLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAISGYGKKIDKSIKKGLYWL 186          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF_ENCCU (ADP-ribosylation factor OS=Encephalitozoon cuniculi GN=ARF-1 PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 3.454e-14
Identity = 42/93 (45.16%), Postives = 55/93 (59.14%), Query Frame = 3
Query:   12 GEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNS--VILVFANKQDM 284
            GEV  TVPT+GFN E V   ++ F VWD+GGQ      W  Y N   G+IY+VD  D +R GK+ +E   I+    +LNS   +LV ANK D+
Sbjct:   48 GEVHQTVPTLGFNCENVTLGSMKFQVWDIGGQNSFMRFWHQYINEGCGIIYMVDCADPQRFGKSGEELWRILN---ILNSPRPLLVLANKIDL 137          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL10_MOUSE (ADP-ribosylation factor-like protein 10 OS=Mus musculus GN=Arl10 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.988e-13
Identity = 40/108 (37.04%), Postives = 66/108 (61.11%), Query Frame = 3
Query:   30 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAII-KDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRK 350
            VPT GFN  ++  KN    + ++G  + LR  W+ + N  D L+++VDS DR R+  A+QE Q ++ +DP   +  +++ ANKQD+ GAM  +E+ + LGL    N++
Sbjct:  106 VPTWGFNSVRLPTKNFEVDLLEIGDSQNLRFYWKEFVNEVDVLVFMVDSTDRLRLPWARQELQKLLDRDP---DLPVVIVANKQDLSGAMNMVELQQELGLLASYNQR 210          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: SAR1_SCHPO (Small COPII coat GTPase sar1 OS=Schizosaccharomyces pombe GN=sar1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.111e-12
Identity = 43/138 (31.16%), Postives = 67/138 (48.55%), Query Frame = 3
Query:   33 PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKN----------RKWHIQGTCALKGDGLYEGLDWLA 416
            PT+    E++   NV FT +D+GG ++ R LWR YF   +G++Y+VD  D ER+ ++K E  A++    +     L+  NK D  GA++  E+   LGL+              R   +     +   G  EG  WLA
Sbjct:   50 PTLHPTSEELAIGNVRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAISEDELKAALGLYQTTGKGVSKPVPGIRPIEVFMCSVVLRQGYGEGFKWLA 187          
The following BLAST results are available for this feature:
BLAST of CK935520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
ARFRP_RAT3.690e-1633.59ADP-ribosylation factor-related protein 1 OS=Rattu... [more]
ARFRP_MOUSE3.690e-1633.59ADP-ribosylation factor-related protein 1 OS=Mus m... [more]
ARFRP_BOVIN4.820e-1633.59ADP-ribosylation factor-related protein 1 OS=Bos t... [more]
AR13B_DANRE1.074e-1530.56ADP-ribosylation factor-like protein 13B OS=Danio ... [more]
ARL3_YEAST2.392e-1532.59ADP-ribosylation factor-like protein 3 OS=Saccharo... [more]
AR13B_MOUSE9.090e-1533.82ADP-ribosylation factor-like protein 13B OS=Mus mu... [more]
AR13B_HUMAN1.550e-1433.82ADP-ribosylation factor-like protein 13B OS=Homo s... [more]
ARF_ENCCU3.454e-1445.16ADP-ribosylation factor OS=Encephalitozoon cunicul... [more]
ARL10_MOUSE4.988e-1337.04ADP-ribosylation factor-like protein 10 OS=Mus mus... [more]
SAR1_SCHPO1.111e-1231.16Small COPII coat GTPase sar1 OS=Schizosaccharomyce... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_G08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935520 ID=CK935520; Name=CK935520; organism=Citrus sinensis; type=EST; length=795bp
GGGTGCACATTGGTGAAGTTTTATCTACTGTTCCTACTATTGGTTTTAAT
GTCGAGAAAGTTCAGTATAAGAATGTCATATTCACTGTTTGGGATGTTGG
CGGACAAGAGAAATTGAGGCCACTATGGAGGCATTATTTTAATAACACTG
ATGGACTGATCTATGTTGTTGACTCCTTGGACCGGGAGAGAATTGGTAAA
GCAAAGCAAGAATTTCAGGCCATTATCAAAGATCCTTTTATGCTGAACAG
TGTCATTTTGGTGTTTGCCAATAAACAGGACATGAAAGGAGCAATGACCC
CAATGGAAGTATGTGAAGGATTAGGTCTCTTTGATCTCAAGAACAGGAAA
TGGCATATTCAAGGGACTTGTGCACTTAAAGGAGATGGACTTTACGAAGG
CTTGGATTGGTTGGCTTCAACACTTAAGGAGATGAGAGCTGCTGGATACT
CTTCAGTGGGCACCTCATCATTCTAGGGATCCAGGTTTACACGAGAGGAT
TTGAGGTAGATTGAATGATGAAACTCCTGAGTCATGCGTTTACTGGAGGG
AAGTCCCGTCTGTAATCAAATTCTTTTGGGTTGTATGTATCTAAGGCCAA
TGAAGCTTTTGATAGGGTGCTTACATTTGACCGTACTTGTTTGTGTGACT
TCCTGTAATGTATATTGAAGTGAACTGGACTCGGGGTTCAATACATGTCC
TTTATCCTCCTAAGATTCAAAATATGAGTTAAATCGCACACGCACGGGCA
CAGACACGTGTGCTTACCAGTGTGGTGGTGTAGGATAATTGAATC
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