CK935520

Overview
NameCK935520
Unique NameCK935520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: SAR1_PICPG (Small COPII coat GTPase SAR1 OS=Pichia pastoris (strain GS115) GN=SAR1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.451e-12
Identity = 45/138 (32.61%), Postives = 73/138 (52.90%), Query Frame = 3
Query:   33 PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL--KNRKWHIQG-------TCAL-KGDGLYEGLDWLA 416
            PT     E++   NV FT +D+GG E+ R +W+ YF   DG++Y+VD  D ER  +++ E  A++K   +    +LV  NK D   A++  E+   LGL     K++   ++G       TC++    G  EG+ WL+
Sbjct:   50 PTWHPTSEELSIGNVRFTTFDLGGHEQARRVWKDYFPEVDGIVYLVDIADPERFEESRVELDALLKIEELSKVPVLVLGNKIDKSTAVSENELRHALGLMTTTGKDKVQLVEGQRPLEVFTCSIYLRQGYGEGIRWLS 187          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: SAR1_USTMA (Small COPII coat GTPase SAR1 OS=Ustilago maydis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.475e-12
Identity = 33/100 (33.00%), Postives = 59/100 (59.00%), Query Frame = 3
Query:   33 PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF 332
            PT+    E++    V FT +D+GG ++ R LW+ YF   DG++++VD+ D ER  +A+ E  A++    + +   L+  NK D  GA++  E+ + +GL+
Sbjct:   50 PTLHPTSEELAIGQVKFTTYDLGGHQQARRLWKDYFPEVDGIVFLVDTQDHERFAEARAELDALLSIEELSSVPFLILGNKIDAPGAVSEEELRQAIGLY 149          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: SAR1_CRYNE (Small COPII coat GTPase SAR1 OS=Cryptococcus neoformans GN=SAR1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.233e-12
Identity = 35/100 (35.00%), Postives = 57/100 (57.00%), Query Frame = 3
Query:   33 PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF 332
            PT+    E++   NV FT +D+GG  + R LWR YF   DG++++VDS D ER  ++K E  +++    +     L+  NK D  GA++  ++   LGL+
Sbjct:   50 PTLHPTSEELAIGNVKFTTYDLGGHIQARRLWRDYFPEVDGIVFLVDSADAERFAESKAELDSLLSIESLAQVPFLILGNKIDAYGAVSEEQLRHELGLY 149          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: SAR1_PICST (Small COPII coat GTPase SAR1 OS=Pichia stipitis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.222e-12
Identity = 39/138 (28.26%), Postives = 71/138 (51.45%), Query Frame = 3
Query:   33 PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLK----------NRKWHIQGTCALKGDGLYEGLDWLA 416
            PT+    E++   +V FT +D+GG ++ R LW+ YF   +G++++VD+ D ER  ++K E +++ K   + +   L+  NK D+  A+  ME+   LGL++            +R   +     +   G  EG  WL+
Sbjct:   50 PTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADPERFAESKAELESLFKIEELSHVPFLILGNKIDVPTAVGEMELKSALGLYNTTGKDTGKLPEGSRPIEVYMVSVVMRSGYGEGFKWLS 187          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: SAR1A_PONAB (GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.222e-12
Identity = 41/141 (29.08%), Postives = 71/141 (50.35%), Query Frame = 3
Query:   30 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF------------DLKNRKWHIQGTCALKGDGLYEGLDWLA 416
            VPT+    E++    + FT +D+GG E+ R +W++Y    +G++++VD  D  R+ ++K E  A++ D  + N  IL+  NK D   A++  ++ E  GL+            +L  R   +     LK  G  EG  WL+
Sbjct:   54 VPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLS 194          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: SAR1A_HUMAN (GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.222e-12
Identity = 41/141 (29.08%), Postives = 71/141 (50.35%), Query Frame = 3
Query:   30 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF------------DLKNRKWHIQGTCALKGDGLYEGLDWLA 416
            VPT+    E++    + FT +D+GG E+ R +W++Y    +G++++VD  D  R+ ++K E  A++ D  + N  IL+  NK D   A++  ++ E  GL+            +L  R   +     LK  G  EG  WL+
Sbjct:   54 VPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLS 194          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: SAR1_DEBHA (Small COPII coat GTPase SAR1 OS=Debaryomyces hansenii GN=SAR1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.514e-12
Identity = 33/101 (32.67%), Postives = 60/101 (59.41%), Query Frame = 3
Query:   33 PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFD 335
            PT+    E++   +V FT +D+GG ++ R LW+ YF   +G++++VD+ D ER  ++K E +++ K   + +   L+  NK D   A+  ME+   LGL++
Sbjct:   50 PTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADPERFAESKAELESLFKIEELASVPFLILGNKIDASSAVGEMELKSALGLYN 150          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: SAR1A_PIG (GTP-binding protein SAR1a OS=Sus scrofa GN=SAR1A PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.514e-12
Identity = 41/141 (29.08%), Postives = 71/141 (50.35%), Query Frame = 3
Query:   30 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF------------DLKNRKWHIQGTCALKGDGLYEGLDWLA 416
            VPT+    E++    + FT +D+GG E+ R +W++Y    +G++++VD  D  R+ ++K E  A++ D  + N  IL+  NK D   A++  ++ E  GL+            +L  R   +     LK  G  EG  WL+
Sbjct:   54 VPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHPRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLS 194          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: SAR1A_BOVIN (GTP-binding protein SAR1a OS=Bos taurus GN=SAR1A PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.514e-12
Identity = 41/141 (29.08%), Postives = 71/141 (50.35%), Query Frame = 3
Query:   30 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF------------DLKNRKWHIQGTCALKGDGLYEGLDWLA 416
            VPT+    E++    + FT +D+GG E+ R +W++Y    +G++++VD  D  R+ ++K E  A++ D  + N  IL+  NK D   A++  ++ E  GL+            +L  R   +     LK  G  EG  WL+
Sbjct:   54 VPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHPRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLS 194          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARLX_DICDI (ADP-ribosylation factor-like protein DDB_G0292332 OS=Dictyostelium discoideum GN=DDB_G0292332 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.514e-12
Identity = 35/87 (40.23%), Postives = 54/87 (62.07%), Query Frame = 3
Query:   30 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF-NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 287
            +PT GFNVE +  + V F +WD+GG+E  R  +RHY  +  D +I+V DS D   + ++K+E+Q +     + N   L+ ANKQD+K
Sbjct:   57 IPTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQISLKNVPFLLVANKQDLK 143          
The following BLAST results are available for this feature:
BLAST of CK935520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
SAR1_PICPG1.451e-1232.61Small COPII coat GTPase SAR1 OS=Pichia pastoris (s... [more]
SAR1_USTMA2.475e-1233.00Small COPII coat GTPase SAR1 OS=Ustilago maydis GN... [more]
SAR1_CRYNE3.233e-1235.00Small COPII coat GTPase SAR1 OS=Cryptococcus neofo... [more]
SAR1_PICST4.222e-1228.26Small COPII coat GTPase SAR1 OS=Pichia stipitis GN... [more]
SAR1A_PONAB4.222e-1229.08GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A... [more]
SAR1A_HUMAN4.222e-1229.08GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A... [more]
SAR1_DEBHA5.514e-1232.67Small COPII coat GTPase SAR1 OS=Debaryomyces hanse... [more]
SAR1A_PIG5.514e-1229.08GTP-binding protein SAR1a OS=Sus scrofa GN=SAR1A P... [more]
SAR1A_BOVIN5.514e-1229.08GTP-binding protein SAR1a OS=Bos taurus GN=SAR1A P... [more]
ARLX_DICDI5.514e-1240.23ADP-ribosylation factor-like protein DDB_G0292332 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004554_G08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935520 ID=CK935520; Name=CK935520; organism=Citrus sinensis; type=EST; length=795bp
GGGTGCACATTGGTGAAGTTTTATCTACTGTTCCTACTATTGGTTTTAAT
GTCGAGAAAGTTCAGTATAAGAATGTCATATTCACTGTTTGGGATGTTGG
CGGACAAGAGAAATTGAGGCCACTATGGAGGCATTATTTTAATAACACTG
ATGGACTGATCTATGTTGTTGACTCCTTGGACCGGGAGAGAATTGGTAAA
GCAAAGCAAGAATTTCAGGCCATTATCAAAGATCCTTTTATGCTGAACAG
TGTCATTTTGGTGTTTGCCAATAAACAGGACATGAAAGGAGCAATGACCC
CAATGGAAGTATGTGAAGGATTAGGTCTCTTTGATCTCAAGAACAGGAAA
TGGCATATTCAAGGGACTTGTGCACTTAAAGGAGATGGACTTTACGAAGG
CTTGGATTGGTTGGCTTCAACACTTAAGGAGATGAGAGCTGCTGGATACT
CTTCAGTGGGCACCTCATCATTCTAGGGATCCAGGTTTACACGAGAGGAT
TTGAGGTAGATTGAATGATGAAACTCCTGAGTCATGCGTTTACTGGAGGG
AAGTCCCGTCTGTAATCAAATTCTTTTGGGTTGTATGTATCTAAGGCCAA
TGAAGCTTTTGATAGGGTGCTTACATTTGACCGTACTTGTTTGTGTGACT
TCCTGTAATGTATATTGAAGTGAACTGGACTCGGGGTTCAATACATGTCC
TTTATCCTCCTAAGATTCAAAATATGAGTTAAATCGCACACGCACGGGCA
CAGACACGTGTGCTTACCAGTGTGGTGGTGTAGGATAATTGAATC
back to top