CK935520

Overview
NameCK935520
Unique NameCK935520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: SAR1B_PIG (GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.202e-12
Identity = 40/141 (28.37%), Postives = 71/141 (50.35%), Query Frame = 3
Query:   30 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF------------DLKNRKWHIQGTCALKGDGLYEGLDWLA 416
            VPT+    E++    + FT +D+GG  + R +W++Y    +G++++VD  D ER+ ++K+E  +++ D  + N  IL+  NK D   A++   + E  GL+            +L  R   +     LK  G  EG  W+A
Sbjct:   54 VPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 194          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: SAR1B_MOUSE (GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.202e-12
Identity = 40/141 (28.37%), Postives = 71/141 (50.35%), Query Frame = 3
Query:   30 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF------------DLKNRKWHIQGTCALKGDGLYEGLDWLA 416
            VPT+    E++    + FT +D+GG  + R +W++Y    +G++++VD  D ER+ ++K+E  +++ D  + N  IL+  NK D   A++   + E  GL+            +L  R   +     LK  G  EG  W+A
Sbjct:   54 VPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 194          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: SAR1B_HUMAN (GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.202e-12
Identity = 40/141 (28.37%), Postives = 71/141 (50.35%), Query Frame = 3
Query:   30 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF------------DLKNRKWHIQGTCALKGDGLYEGLDWLA 416
            VPT+    E++    + FT +D+GG  + R +W++Y    +G++++VD  D ER+ ++K+E  +++ D  + N  IL+  NK D   A++   + E  GL+            +L  R   +     LK  G  EG  W+A
Sbjct:   54 VPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSVLKRQGYGEGFRWMA 194          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: SAR1B_BOVIN (GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.202e-12
Identity = 40/141 (28.37%), Postives = 71/141 (50.35%), Query Frame = 3
Query:   30 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF------------DLKNRKWHIQGTCALKGDGLYEGLDWLA 416
            VPT+    E++    + FT +D+GG  + R +W++Y    +G++++VD  D ER+ ++K+E  +++ D  + N  IL+  NK D   A++   + E  GL+            +L  R   +     LK  G  EG  W+A
Sbjct:   54 VPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGNVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 194          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: SAR1A_MOUSE (GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.202e-12
Identity = 41/141 (29.08%), Postives = 71/141 (50.35%), Query Frame = 3
Query:   30 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF------------DLKNRKWHIQGTCALKGDGLYEGLDWLA 416
            VPT+    E++    + FT +D+GG E+ R +W++Y    +G++++VD  D  R+ ++K E  A++ D  + N  IL+  NK D   A++  ++ E  GL+            +L  R   +     LK  G  EG  WL+
Sbjct:   54 VPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIKGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLS 194          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: SAR1B_RAT (GTP-binding protein SAR1b OS=Rattus norvegicus GN=Sar1b PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.406e-12
Identity = 40/141 (28.37%), Postives = 71/141 (50.35%), Query Frame = 3
Query:   30 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF------------DLKNRKWHIQGTCALKGDGLYEGLDWLA 416
            VPT+    E++    + FT +D+GG  + R +W++Y    +G++++VD  D ER+ ++K+E  +++ D  + N  IL+  NK D   A++   + E  GL+            +L  R   +     LK  G  EG  W+A
Sbjct:   54 VPTLHPTSEELTIAGMTFTTFDLGGHLQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 194          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: SAR1B_CRIGR (GTP-binding protein SAR1b OS=Cricetulus griseus GN=SAR1B PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.406e-12
Identity = 40/141 (28.37%), Postives = 71/141 (50.35%), Query Frame = 3
Query:   30 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF------------DLKNRKWHIQGTCALKGDGLYEGLDWLA 416
            VPT+    E++    + FT +D+GG  + R +W++Y    +G++++VD  D ER+ ++K+E  +++ D  + N  IL+  NK D   A++   + E  GL+            +L  R   +     LK  G  EG  W+A
Sbjct:   54 VPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 194          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: SAR2_SOLLC (GTP-binding protein SAR2 OS=Solanum lycopersicum GN=SAR2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.228e-11
Identity = 42/137 (30.66%), Postives = 71/137 (51.82%), Query Frame = 3
Query:   54 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQ--GT---------CAL-KGDGLYEGLDWLASTLK 428
            E++   N+ F  +D+GG +  R +WR Y+   D ++Y+VD+ DRER  +AK+E   ++ D  + N   L+  NK D+  A +  E+   LGL  +   K +I   GT         C++ +  G  EG  W++  +K
Sbjct:   57 EELSIGNIKFKAFDLGGHQIARRVWRDYYAKVDAVVYLVDANDRERFPEAKKELDGLLSDESLTNVPFLILGNKIDIPYAASEDELRYHLGLTGVTTGKGNINLAGTNVRPIEVFMCSIVRKMGYGEGFKWMSQYIK 193          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: SAR1_PICGU (Small COPII coat GTPase SAR1 OS=Pichia guilliermondii GN=SAR1 PE=3 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.228e-11
Identity = 39/139 (28.06%), Postives = 70/139 (50.36%), Query Frame = 3
Query:   33 PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLK----------NRKWHIQGTCALKGDGLYEGLDWLAS 419
            PT+    E++   +V FT +D+GG ++ R LW+ YF   +G++++VD+ D ER+ ++K E +++ +   +     L+  NK D   A+  ME+   LGL++             R   +     +   G  EG  WL+S
Sbjct:   50 PTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADTERLAESKAELESLFRIEELSQVPFLILGNKIDKSTAIGEMELKSALGLYNTTGKDVTKLPEGQRPIEVFMVSVVMRMGYGEGFKWLSS 188          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: SAR1_PHANO (Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodorum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.228e-11
Identity = 40/137 (29.20%), Postives = 71/137 (51.82%), Query Frame = 3
Query:   33 PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNR-KWHIQG--------TCALKGDGLYEGLDWLA 416
            PT+    E++   NV FT +D+GG  + R LWR YF    G++++VD+ D ER+ ++K E  A++    + N+  ++  NK D   A++  ++   LGL+    + K  ++G           +   G  EG+ WL+
Sbjct:   46 PTLHPTSEELSIGNVKFTTFDLGGHAQARRLWRDYFPEVSGIVFLVDAKDHERLNESKAELDALLAMEELKNTPFVILGNKIDHPEAVSEDQLRATLGLYQTTGKGKVPLEGIRPIEVFMCSVVMRQGYGEGIRWLS 182          
The following BLAST results are available for this feature:
BLAST of CK935520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
SAR1B_PIG7.202e-1228.37GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B P... [more]
SAR1B_MOUSE7.202e-1228.37GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b... [more]
SAR1B_HUMAN7.202e-1228.37GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B... [more]
SAR1B_BOVIN7.202e-1228.37GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B P... [more]
SAR1A_MOUSE7.202e-1229.08GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a... [more]
SAR1B_RAT9.406e-1228.37GTP-binding protein SAR1b OS=Rattus norvegicus GN=... [more]
SAR1B_CRIGR9.406e-1228.37GTP-binding protein SAR1b OS=Cricetulus griseus GN... [more]
SAR2_SOLLC1.228e-1130.66GTP-binding protein SAR2 OS=Solanum lycopersicum G... [more]
SAR1_PICGU1.228e-1128.06Small COPII coat GTPase SAR1 OS=Pichia guilliermon... [more]
SAR1_PHANO1.228e-1129.20Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodo... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_G08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935520 ID=CK935520; Name=CK935520; organism=Citrus sinensis; type=EST; length=795bp
GGGTGCACATTGGTGAAGTTTTATCTACTGTTCCTACTATTGGTTTTAAT
GTCGAGAAAGTTCAGTATAAGAATGTCATATTCACTGTTTGGGATGTTGG
CGGACAAGAGAAATTGAGGCCACTATGGAGGCATTATTTTAATAACACTG
ATGGACTGATCTATGTTGTTGACTCCTTGGACCGGGAGAGAATTGGTAAA
GCAAAGCAAGAATTTCAGGCCATTATCAAAGATCCTTTTATGCTGAACAG
TGTCATTTTGGTGTTTGCCAATAAACAGGACATGAAAGGAGCAATGACCC
CAATGGAAGTATGTGAAGGATTAGGTCTCTTTGATCTCAAGAACAGGAAA
TGGCATATTCAAGGGACTTGTGCACTTAAAGGAGATGGACTTTACGAAGG
CTTGGATTGGTTGGCTTCAACACTTAAGGAGATGAGAGCTGCTGGATACT
CTTCAGTGGGCACCTCATCATTCTAGGGATCCAGGTTTACACGAGAGGAT
TTGAGGTAGATTGAATGATGAAACTCCTGAGTCATGCGTTTACTGGAGGG
AAGTCCCGTCTGTAATCAAATTCTTTTGGGTTGTATGTATCTAAGGCCAA
TGAAGCTTTTGATAGGGTGCTTACATTTGACCGTACTTGTTTGTGTGACT
TCCTGTAATGTATATTGAAGTGAACTGGACTCGGGGTTCAATACATGTCC
TTTATCCTCCTAAGATTCAAAATATGAGTTAAATCGCACACGCACGGGCA
CAGACACGTGTGCTTACCAGTGTGGTGGTGTAGGATAATTGAATC
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