CK935520

Overview
NameCK935520
Unique NameCK935520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL17_HUMAN (ADP-ribosylation factor-like protein 17 OS=Homo sapiens GN=ARL17 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.228e-11
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDG 155
            +GE +  VPT+GF VE V+YKN  F VWDVG   K+RPLW+H+F NT G
Sbjct:   39 LGETVPAVPTVGFCVETVEYKNNTFAVWDVGSHFKIRPLWQHFFQNTKG 87          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL10_HUMAN (ADP-ribosylation factor-like protein 10 OS=Homo sapiens GN=ARL10 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.604e-11
Identity = 39/108 (36.11%), Postives = 65/108 (60.19%), Query Frame = 3
Query:   30 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAII-KDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRK 350
            +PT GFN  ++  K+    + ++GG + LR  W+ + +  D L++VVDS DR R+  A+QE   ++ KDP   +  ++V ANKQD+  AM+  E+   LGL  + N++
Sbjct:  107 IPTWGFNSVRLPTKDFEVDLLEIGGSQNLRFYWKEFVSEVDVLVFVVDSADRLRLPWARQELHKLLDKDP---DLPVVVVANKQDLSEAMSMGELQRELGLQAIDNQR 211          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: SAR1_LODEL (Small COPII coat GTPase SAR1 OS=Lodderomyces elongisporus GN=SAR1 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.095e-11
Identity = 32/101 (31.68%), Postives = 60/101 (59.41%), Query Frame = 3
Query:   33 PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFD 335
            PT+    E++   +V FT +D+GG ++ R LW+ YF   +G++++VD+ D ER  ++K E +++ K   +     ++  NK D+  A+  ME+   LGL++
Sbjct:   50 PTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADSERFAESKAELESLFKIEELSQVPFVILGNKIDVPTAVGEMELKNALGLYN 150          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: SAR1_CAEEL (GTP-binding protein SAR1 OS=Caenorhabditis elegans GN=ZK180.4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.737e-11
Identity = 37/144 (25.69%), Postives = 73/144 (50.69%), Query Frame = 3
Query:   30 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---------MEVCEGLG---LFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 425
            VPT+    E++    + FT +D+GG  + R +W+ YF   D +++++D  D ER+ +++ E +++++D  + +  +L+  NK D  GA++            +C G G     ++ +R   +     L+  G  EG+ WL   L
Sbjct:   50 VPTLHPTSEQMSLGGISFTTYDLGGHAQARRVWKDYFPAVDAVVFLIDVADAERMQESRVELESLLQDEQIASVPVLILGNKIDKPGALSEDQLKWQLNIQHMCTGKGDVSRNEMASRPMEVFMCSVLQRQGYGEGIRWLGQYL 193          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: SAR1_NEUCR (Small COPII coat GTPase sar-1 OS=Neurospora crassa GN=sar-1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.574e-11
Identity = 34/100 (34.00%), Postives = 59/100 (59.00%), Query Frame = 3
Query:   33 PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF 332
            PT+    E++   NV FT +D+GG ++ R LW+ YF   +G++++VD+ D ER+ +AK E  A++    +     +V  NK D   A++  E+ + LGL+
Sbjct:   50 PTLHPTSEELSVGNVKFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHERLPEAKAEIDALLSMEELAKVPFVVLGNKIDHPEAVSEDELRQRLGLW 149          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: SAR1_CANAL (Small COPII coat GTPase SAR1 OS=Candida albicans GN=SAR1 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.668e-11
Identity = 31/101 (30.69%), Postives = 60/101 (59.41%), Query Frame = 3
Query:   33 PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFD 335
            PT+    E++   +V FT +D+GG ++ R LW+ YF   +G++++VD+ D ER  ++K E +++ +   +     ++  NK D+  A+  ME+   LGL++
Sbjct:   50 PTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADTERFAESKAELESLFRIEELSQVPFVILGNKIDVPTAVGEMELKNALGLYN 150          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: SAR1B_DICDI (GTP-binding protein Sar1B OS=Dictyostelium discoideum GN=sarB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.668e-11
Identity = 44/142 (30.99%), Postives = 73/142 (51.41%), Query Frame = 3
Query:   12 GEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI-YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCE-------GLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 413
            G + S +PT+  N E   Y NV F  +D+GGQ+ LR LW+ Y  ++  +I ++VDS D   I ++K E   I+ D  +  S +L+  +K D KG      + +        LGL +  N  + +  T ++   G+ + L+WL
Sbjct:   43 GSLKSHIPTLRPNAESFTYGNVNFKAYDLGGQQNLRFLWKQYVPDSKTIIVFMVDSSDYNSIIESKSEIHDILGDEHLSQSPLLILGSKCDAKGHHNRENLIDLLDIRRFELGLNNSNNVPFDLIMTSSITRYGITDMLNWL 184          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: SAR1_MAGGR (Small COPII coat GTPase SAR1 OS=Magnaporthe grisea GN=SAR1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.097e-11
Identity = 39/137 (28.47%), Postives = 70/137 (51.09%), Query Frame = 3
Query:   33 PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNR-KWHIQG--------TCALKGDGLYEGLDWLA 416
            PT+    E++   NV FT +D+GG ++ R LW+ YF   +G++++VD+ D +R  +AK E  A++    +     ++  NK D   A++  E+   LGL+    + K  ++G           +   G  EG+ WL+
Sbjct:   50 PTLHPTSEELAIGNVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHDRFPEAKAELDALLSMEELAKVPFVILGNKIDHPEAISEEELRHQLGLYQTTGKGKVPLEGIRPIEVFMCSVVMRQGYGEGIRWLS 186          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL15_PONAB (ADP-ribosylation factor-like protein 15 OS=Pongo abelii GN=ARL15 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 38/138 (27.54%), Postives = 70/138 (50.72%), Query Frame = 3
Query:   24 STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALKGDGLYEGLDWLASTLKE 431
            + V T GF+++ V ++N I  V ++GG + +R  W  Y+  + G+I+V+DS   E  +  A+ E  + ++ P +     L+ AN QD   A +  E+ +   L  L + ++W +Q       D L +    L + L+E
Sbjct:   59 NVVSTTGFSIKAVPFQNAILNVKELGGADNIRKYWSRYYQGSQGVIFVLDSASSEDDLEAARNELHSALQHPQLCTLPFLILANHQDKPAARSVQEIKKYFELEPLARGKRWILQPCSLDDMDALKDSFSQLINLLEE 196          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL15_HUMAN (ADP-ribosylation factor-like protein 15 OS=Homo sapiens GN=ARL15 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 38/138 (27.54%), Postives = 70/138 (50.72%), Query Frame = 3
Query:   24 STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALKGDGLYEGLDWLASTLKE 431
            + V T GF+++ V ++N I  V ++GG + +R  W  Y+  + G+I+V+DS   E  +  A+ E  + ++ P +     L+ AN QD   A +  E+ +   L  L + ++W +Q       D L +    L + L+E
Sbjct:   59 NVVSTTGFSIKAVPFQNAILNVKELGGADNIRKYWSRYYQGSQGVIFVLDSASSEDDLEAARNELHSALQHPQLCTLPFLILANHQDKPAARSVQEIKKYFELEPLARGKRWILQPCSLDDMDALKDSFSQLINLLEE 196          
The following BLAST results are available for this feature:
BLAST of CK935520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
ARL17_HUMAN1.228e-1159.18ADP-ribosylation factor-like protein 17 OS=Homo sa... [more]
ARL10_HUMAN1.604e-1136.11ADP-ribosylation factor-like protein 10 OS=Homo sa... [more]
SAR1_LODEL2.095e-1131.68Small COPII coat GTPase SAR1 OS=Lodderomyces elong... [more]
SAR1_CAEEL2.737e-1125.69GTP-binding protein SAR1 OS=Caenorhabditis elegans... [more]
SAR1_NEUCR3.574e-1134.00Small COPII coat GTPase sar-1 OS=Neurospora crassa... [more]
SAR1_CANAL4.668e-1130.69Small COPII coat GTPase SAR1 OS=Candida albicans G... [more]
SAR1B_DICDI4.668e-1130.99GTP-binding protein Sar1B OS=Dictyostelium discoid... [more]
SAR1_MAGGR6.097e-1128.47Small COPII coat GTPase SAR1 OS=Magnaporthe grisea... [more]
ARL15_PONAB7.963e-1127.54ADP-ribosylation factor-like protein 15 OS=Pongo a... [more]
ARL15_HUMAN7.963e-1127.54ADP-ribosylation factor-like protein 15 OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_G08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935520 ID=CK935520; Name=CK935520; organism=Citrus sinensis; type=EST; length=795bp
GGGTGCACATTGGTGAAGTTTTATCTACTGTTCCTACTATTGGTTTTAAT
GTCGAGAAAGTTCAGTATAAGAATGTCATATTCACTGTTTGGGATGTTGG
CGGACAAGAGAAATTGAGGCCACTATGGAGGCATTATTTTAATAACACTG
ATGGACTGATCTATGTTGTTGACTCCTTGGACCGGGAGAGAATTGGTAAA
GCAAAGCAAGAATTTCAGGCCATTATCAAAGATCCTTTTATGCTGAACAG
TGTCATTTTGGTGTTTGCCAATAAACAGGACATGAAAGGAGCAATGACCC
CAATGGAAGTATGTGAAGGATTAGGTCTCTTTGATCTCAAGAACAGGAAA
TGGCATATTCAAGGGACTTGTGCACTTAAAGGAGATGGACTTTACGAAGG
CTTGGATTGGTTGGCTTCAACACTTAAGGAGATGAGAGCTGCTGGATACT
CTTCAGTGGGCACCTCATCATTCTAGGGATCCAGGTTTACACGAGAGGAT
TTGAGGTAGATTGAATGATGAAACTCCTGAGTCATGCGTTTACTGGAGGG
AAGTCCCGTCTGTAATCAAATTCTTTTGGGTTGTATGTATCTAAGGCCAA
TGAAGCTTTTGATAGGGTGCTTACATTTGACCGTACTTGTTTGTGTGACT
TCCTGTAATGTATATTGAAGTGAACTGGACTCGGGGTTCAATACATGTCC
TTTATCCTCCTAAGATTCAAAATATGAGTTAAATCGCACACGCACGGGCA
CAGACACGTGTGCTTACCAGTGTGGTGGTGTAGGATAATTGAATC
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