CK935520

Overview
NameCK935520
Unique NameCK935520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF2_BOVIN (ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.656e-48
Identity = 83/143 (58.04%), Postives = 112/143 (78.32%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 437
            +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V+LVF NKQD+  AM   E+ + LGL  L+ R W+IQ TCA  GDGLYEGLDWL++ LK  +
Sbjct:   39 LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQK 181          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF1_SCHPO (ADP-ribosylation factor 1 OS=Schizosaccharomyces pombe GN=arf1 PE=2 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 6.237e-48
Identity = 82/140 (58.57%), Postives = 114/140 (81.43%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 428
            +GE+++T+PTIGFNVE V+Y+N+ FTVWDVGGQ+K+RPLWRHYF NT G+I+VVDS DRERI +A +E Q ++ +  + ++++LVFANKQD+  AM   E+ + LGL  L++R+W+IQ TCA  GDGLYEGL+WL++ LK
Sbjct:   39 LGEIVTTIPTIGFNVETVEYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLK 178          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF1_SOLTU (ADP-ribosylation factor 1 OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 1.064e-47
Identity = 81/144 (56.25%), Postives = 114/144 (79.17%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRA 440
            +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DR+R+ +A++E   ++ +  + ++V+LVFANKQD+  AM   E+ + LGL  L+ R W+IQ TCA  G+GLYEGLDWL++ ++  +A
Sbjct:   39 LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNQIRNQKA 182          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF_CRYNE (ADP-ribosylation factor OS=Cryptococcus neoformans GN=ARF PE=1 SV=3)

HSP 1 Score: 189.889 bits (481), Expect = 1.389e-47
Identity = 82/140 (58.57%), Postives = 112/140 (80.00%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 428
            +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT G+I+VVDS DRERI +A++E Q ++ +  + ++++LVFANKQD+  AM   E+ + LGL  L+ R W+IQ  CA  GDGLYEGL+WL++ LK
Sbjct:   39 LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERITEAREELQRMLSEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRQRSWYIQAACATSGDGLYEGLEWLSANLK 178          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF_ASHGO (ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1 PE=3 SV=3)

HSP 1 Score: 189.889 bits (481), Expect = 1.389e-47
Identity = 83/140 (59.29%), Postives = 113/140 (80.71%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 428
            +GEV++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT+G+I+VVDS DR RI +A++  Q ++ +  + N+V+LVFANKQD+  AM+  E+ E LGL  ++ R W+IQ TCA  G+GLYEGL+WL++ LK
Sbjct:   39 LGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFRNTEGIIFVVDSNDRSRIAEAREVLQRMLNEDEIRNAVLLVFANKQDLPEAMSAAEITEKLGLHSIRQRPWYIQATCATSGEGLYEGLEWLSTNLK 178          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 189.504 bits (480), Expect = 1.815e-47
Identity = 81/139 (58.27%), Postives = 111/139 (79.86%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 425
            +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DR+R+G+A+ E   ++ +  + ++V+LVFANKQD+  AM   E+ + LGL  L+ R W+IQ TCA  G+GLYEGLDWL++ +
Sbjct:   39 LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF_NEUCR (ADP-ribosylation factor OS=Neurospora crassa GN=NCU08340 PE=3 SV=3)

HSP 1 Score: 189.119 bits (479), Expect = 2.370e-47
Identity = 82/141 (58.16%), Postives = 114/141 (80.85%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 431
            +GEV++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT G+I+VVDS DR+R+ +A++E Q ++ +  + ++++LVFANKQD+  AM   E+ + LGL  L+ R W+IQ TCA  GDGL+EGLDWL++ LK+
Sbjct:   42 LGEVVTTIPTIGFNVETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVVEAREELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLSSLRQRSWYIQATCATTGDGLFEGLDWLSTELKK 182          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 5.280e-47
Identity = 82/139 (58.99%), Postives = 110/139 (79.14%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 425
            +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A+ E   ++ +  + ++V+LVFANKQD+  AM   E+ + LGL  L+ R W+IQ TCA  G+GLYEGLDWL++ L
Sbjct:   39 LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNL 177          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF4_BOVIN (ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE=2 SV=3)

HSP 1 Score: 187.193 bits (474), Expect = 9.006e-47
Identity = 82/141 (58.16%), Postives = 113/141 (80.14%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 431
            +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRERI +  +E Q ++++  + ++V+L+FANKQD+  AM   E+ + LGL  L+NR W++Q TCA +G GLYEGLDWL++ L +
Sbjct:   39 LGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAEELQKMLQEDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSK 179          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 187.193 bits (474), Expect = 9.006e-47
Identity = 82/140 (58.57%), Postives = 112/140 (80.00%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 428
            +GEV++T+PTIGFNVE VQYKN+ FTVWDVGGQ+++R LWRHY+ NT+G+I+V+DS DR RIG+A++  Q ++ +  + N+V LVFANKQD+  AM+  E+ E LGL  ++NR W IQ TCA  G+GLYEGL+WL++ LK
Sbjct:   39 LGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNLK 178          
The following BLAST results are available for this feature:
BLAST of CK935520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
ARF2_BOVIN3.656e-4858.04ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE... [more]
ARF1_SCHPO6.237e-4858.57ADP-ribosylation factor 1 OS=Schizosaccharomyces p... [more]
ARF1_SOLTU1.064e-4756.25ADP-ribosylation factor 1 OS=Solanum tuberosum PE=... [more]
ARF_CRYNE1.389e-4758.57ADP-ribosylation factor OS=Cryptococcus neoformans... [more]
ARF_ASHGO1.389e-4759.29ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1... [more]
ARF1_SALBA1.815e-4758.27ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF_NEUCR2.370e-4758.16ADP-ribosylation factor OS=Neurospora crassa GN=NC... [more]
ARF1_CHLRE5.280e-4758.99ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]
ARF4_BOVIN9.006e-4758.16ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE... [more]
ARF2_YEAST9.006e-4758.57ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_G08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935520 ID=CK935520; Name=CK935520; organism=Citrus sinensis; type=EST; length=795bp
GGGTGCACATTGGTGAAGTTTTATCTACTGTTCCTACTATTGGTTTTAAT
GTCGAGAAAGTTCAGTATAAGAATGTCATATTCACTGTTTGGGATGTTGG
CGGACAAGAGAAATTGAGGCCACTATGGAGGCATTATTTTAATAACACTG
ATGGACTGATCTATGTTGTTGACTCCTTGGACCGGGAGAGAATTGGTAAA
GCAAAGCAAGAATTTCAGGCCATTATCAAAGATCCTTTTATGCTGAACAG
TGTCATTTTGGTGTTTGCCAATAAACAGGACATGAAAGGAGCAATGACCC
CAATGGAAGTATGTGAAGGATTAGGTCTCTTTGATCTCAAGAACAGGAAA
TGGCATATTCAAGGGACTTGTGCACTTAAAGGAGATGGACTTTACGAAGG
CTTGGATTGGTTGGCTTCAACACTTAAGGAGATGAGAGCTGCTGGATACT
CTTCAGTGGGCACCTCATCATTCTAGGGATCCAGGTTTACACGAGAGGAT
TTGAGGTAGATTGAATGATGAAACTCCTGAGTCATGCGTTTACTGGAGGG
AAGTCCCGTCTGTAATCAAATTCTTTTGGGTTGTATGTATCTAAGGCCAA
TGAAGCTTTTGATAGGGTGCTTACATTTGACCGTACTTGTTTGTGTGACT
TCCTGTAATGTATATTGAAGTGAACTGGACTCGGGGTTCAATACATGTCC
TTTATCCTCCTAAGATTCAAAATATGAGTTAAATCGCACACGCACGGGCA
CAGACACGTGTGCTTACCAGTGTGGTGGTGTAGGATAATTGAATC
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