CK935520

Overview
NameCK935520
Unique NameCK935520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF6_RAT (ADP-ribosylation factor 6 OS=Rattus norvegicus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 6.454e-45
Identity = 81/140 (57.86%), Postives = 106/140 (75.71%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 428
            +G+ ++T+PT+GFNVE V YKNV F VWDVGGQ+K+RPLWRHY+  T GLI+VVD  DR+RI +A+QE   II D  M +++IL+FANKQD+  AM P E+ E LGL  +++R W++Q +CA  GDGLYEGL WL S  K
Sbjct:   35 LGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 174          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF6_PIG (ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.454e-45
Identity = 81/140 (57.86%), Postives = 106/140 (75.71%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 428
            +G+ ++T+PT+GFNVE V YKNV F VWDVGGQ+K+RPLWRHY+  T GLI+VVD  DR+RI +A+QE   II D  M +++IL+FANKQD+  AM P E+ E LGL  +++R W++Q +CA  GDGLYEGL WL S  K
Sbjct:   35 LGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 174          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF6_MOUSE (ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 6.454e-45
Identity = 81/140 (57.86%), Postives = 106/140 (75.71%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 428
            +G+ ++T+PT+GFNVE V YKNV F VWDVGGQ+K+RPLWRHY+  T GLI+VVD  DR+RI +A+QE   II D  M +++IL+FANKQD+  AM P E+ E LGL  +++R W++Q +CA  GDGLYEGL WL S  K
Sbjct:   35 LGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 174          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF6_HUMAN (ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 6.454e-45
Identity = 81/140 (57.86%), Postives = 106/140 (75.71%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 428
            +G+ ++T+PT+GFNVE V YKNV F VWDVGGQ+K+RPLWRHY+  T GLI+VVD  DR+RI +A+QE   II D  M +++IL+FANKQD+  AM P E+ E LGL  +++R W++Q +CA  GDGLYEGL WL S  K
Sbjct:   35 LGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 174          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF4_PONAB (ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 PE=2 SV=3)

HSP 1 Score: 181.03 bits (458), Expect = 6.454e-45
Identity = 80/141 (56.74%), Postives = 110/141 (78.01%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 431
            +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+++RPLW+HYF NT GLI+VVDS DRERI +   E Q ++    + ++V+L+FANKQD+  AM   E+ + LGL  L+NR W++Q TCA +G GLYEGLDWL++ L +
Sbjct:   39 LGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSK 179          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF4_HUMAN (ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 PE=1 SV=3)

HSP 1 Score: 181.03 bits (458), Expect = 6.454e-45
Identity = 80/141 (56.74%), Postives = 110/141 (78.01%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 431
            +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+++RPLW+HYF NT GLI+VVDS DRERI +   E Q ++    + ++V+L+FANKQD+  AM   E+ + LGL  L+NR W++Q TCA +G GLYEGLDWL++ L +
Sbjct:   39 LGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSK 179          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF6_CHICK (ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6 PE=2 SV=3)

HSP 1 Score: 180.644 bits (457), Expect = 8.429e-45
Identity = 81/140 (57.86%), Postives = 106/140 (75.71%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 428
            +G+ ++T+PT+GFNVE V YKNV F VWDVGGQ+K+RPLWRHY+  T GLI+VVD  DR+RI +A+QE   II D  M +++IL+FANKQD+  AM P E+ E LGL  +++R W++Q +CA  GDGLYEGL WL S  K
Sbjct:   35 LGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTGDGLYEGLTWLTSNYK 174          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF6_XENLA (ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf6 PE=2 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 1.101e-44
Identity = 81/140 (57.86%), Postives = 106/140 (75.71%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 428
            +G+ ++T+PT+GFNVE V YKNV F VWDVGGQ+K+RPLWRHY+  T GLI+VVD  DR+RI +A+QE   II D  M +++IL+FANKQD+  AM P E+ E LGL  +++R W++Q +CA  GDGLYEGL WL S  K
Sbjct:   35 LGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCPDRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAASGDGLYEGLTWLTSNYK 174          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 3.203e-44
Identity = 77/139 (55.40%), Postives = 108/139 (77.70%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 425
            +GE+++T+PTIGFNVE V+Y+ + FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DR+R+ +A+ E   ++ +  + ++V+LVFANKQD+  AM   E+ +  GL  L+ R W+IQ TCA  G+GLYEGLDWL++ +
Sbjct:   39 LGEIVTTIPTIGFNVETVEYQYISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKHGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF3_ARATH (ADP-ribosylation factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 4.183e-44
Identity = 82/142 (57.75%), Postives = 109/142 (76.76%), Query Frame = 3
Query:    3 VHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 428
            + +GEV+ST+PTIGFNVE VQY N+ F VWD+GGQ  +RP WR YF NT  +IYVVDS D +RIG AK+EF AI+++  +  +V+L+FANKQD+ GA+    V E L L  +K+R+W I  TCA+KG+GL+EGLDWL++TLK
Sbjct:   37 LQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEDELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLK 178          
The following BLAST results are available for this feature:
BLAST of CK935520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
ARF6_RAT6.454e-4557.86ADP-ribosylation factor 6 OS=Rattus norvegicus GN=... [more]
ARF6_PIG6.454e-4557.86ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE... [more]
ARF6_MOUSE6.454e-4557.86ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 ... [more]
ARF6_HUMAN6.454e-4557.86ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 ... [more]
ARF4_PONAB6.454e-4556.74ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 ... [more]
ARF4_HUMAN6.454e-4556.74ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 ... [more]
ARF6_CHICK8.429e-4557.86ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6... [more]
ARF6_XENLA1.101e-4457.86ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf... [more]
ARF1_CATRO3.203e-4455.40ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]
ARF3_ARATH4.183e-4457.75ADP-ribosylation factor 3 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_G08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935520 ID=CK935520; Name=CK935520; organism=Citrus sinensis; type=EST; length=795bp
GGGTGCACATTGGTGAAGTTTTATCTACTGTTCCTACTATTGGTTTTAAT
GTCGAGAAAGTTCAGTATAAGAATGTCATATTCACTGTTTGGGATGTTGG
CGGACAAGAGAAATTGAGGCCACTATGGAGGCATTATTTTAATAACACTG
ATGGACTGATCTATGTTGTTGACTCCTTGGACCGGGAGAGAATTGGTAAA
GCAAAGCAAGAATTTCAGGCCATTATCAAAGATCCTTTTATGCTGAACAG
TGTCATTTTGGTGTTTGCCAATAAACAGGACATGAAAGGAGCAATGACCC
CAATGGAAGTATGTGAAGGATTAGGTCTCTTTGATCTCAAGAACAGGAAA
TGGCATATTCAAGGGACTTGTGCACTTAAAGGAGATGGACTTTACGAAGG
CTTGGATTGGTTGGCTTCAACACTTAAGGAGATGAGAGCTGCTGGATACT
CTTCAGTGGGCACCTCATCATTCTAGGGATCCAGGTTTACACGAGAGGAT
TTGAGGTAGATTGAATGATGAAACTCCTGAGTCATGCGTTTACTGGAGGG
AAGTCCCGTCTGTAATCAAATTCTTTTGGGTTGTATGTATCTAAGGCCAA
TGAAGCTTTTGATAGGGTGCTTACATTTGACCGTACTTGTTTGTGTGACT
TCCTGTAATGTATATTGAAGTGAACTGGACTCGGGGTTCAATACATGTCC
TTTATCCTCCTAAGATTCAAAATATGAGTTAAATCGCACACGCACGGGCA
CAGACACGTGTGCTTACCAGTGTGGTGGTGTAGGATAATTGAATC
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