CK935520

Overview
NameCK935520
Unique NameCK935520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF1_BRARP (ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 178.333 bits (451), Expect = 4.183e-44
Identity = 82/142 (57.75%), Postives = 109/142 (76.76%), Query Frame = 3
Query:    3 VHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 428
            + +GEV+ST+PTIGFNVE VQY N+ F VWD+GGQ  +RP WR YF NT  +IYVVDS D +RIG AK+EF AI+++  +  +V+L+FANKQD+ GA+    V E L L  +K+R+W I  TCA+KG+GL+EGLDWL++TLK
Sbjct:   37 LQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEEELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLK 178          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF_GIALA (ADP-ribosylation factor OS=Giardia lamblia PE=3 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 1.590e-43
Identity = 82/138 (59.42%), Postives = 106/138 (76.81%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE--RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 416
            +GEV++TVPTIGFNVE V+YKN+ FTVWDVGGQ+ +RPLWRHY+ NTD LIYV+DS D E  RI  AK E   ++ +  + ++ +LVFANKQD+  AM+  ++ E LGL +LK R W+IQ TCA  GDGLY+GLDWL+
Sbjct:   39 LGEVVTTVPTIGFNVETVEYKNINFTVWDVGGQDSIRPLWRHYYQNTDALIYVIDSADLEPKRIEDAKNELHTLLGEDELRDAALLVFANKQDLPKAMSTTDLTERLGLQELKKRDWYIQPTCARSGDGLYQGLDWLS 176          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF4_ARATH (Probable ADP-ribosylation factor At2g15310 OS=Arabidopsis thaliana GN=At2g15310 PE=2 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 4.625e-43
Identity = 84/157 (53.50%), Postives = 110/157 (70.06%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL--KEMRAAGYSSVGTSSF 473
            +GEV++TVPTIGFN+E V+YK + FTVWD+GGQEK+R LWRHYF N  GLI+VVDS D ER+ +A+ E   I+ D  +  + +LVFANKQD + A+   EV   LGL  L  R W IQGT A+ G GLYEGL+WL++T+  K  R+   SS  + S+
Sbjct:   39 LGEVVTTVPTIGFNLETVEYKGINFTVWDIGGQEKIRKLWRHYFQNAQGLIFVVDSSDSERLSEARNELHRILTDNELEGACVLVFANKQDSRNALPVAEVANKLGLHSLSKRCWLIQGTSAISGQGLYEGLEWLSTTIPNKPERSTSVSSFRSDSY 195          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 173.711 bits (439), Expect = 1.030e-42
Identity = 79/140 (56.43%), Postives = 104/140 (74.29%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 428
            +G+ ++T+PT+GFNVE V YKNV F VWDVGGQ+K+RPLWRHY+  T GLI+VVD  DR+RI +A+ E   II D  M +++IL+FANKQD+  AM P E+ E LGL  +++R W++Q +CA  GDGL EGL WL S  K
Sbjct:   35 LGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARTELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLSEGLIWLTSNHK 174          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL1_RAT (ADP-ribosylation factor-like protein 1 OS=Rattus norvegicus GN=Arl1 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.488e-41
Identity = 79/142 (55.63%), Postives = 106/142 (74.65%), Query Frame = 3
Query:    3 VHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 428
            + +GEV++T+PTIGFNVE V YKN+ F VWD+GGQ  +RP WR Y++NTD +IYVVDS DR+RIG +K E  A++++  +  ++++VFANKQDM+ AMTP E+   LGL  LK+RKW I  T A KG GL E ++WL  TLK
Sbjct:   37 LQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 178          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL1_MOUSE (ADP-ribosylation factor-like protein 1 OS=Mus musculus GN=Arl1 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.488e-41
Identity = 79/142 (55.63%), Postives = 106/142 (74.65%), Query Frame = 3
Query:    3 VHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 428
            + +GEV++T+PTIGFNVE V YKN+ F VWD+GGQ  +RP WR Y++NTD +IYVVDS DR+RIG +K E  A++++  +  ++++VFANKQDM+ AMTP E+   LGL  LK+RKW I  T A KG GL E ++WL  TLK
Sbjct:   37 LQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 178          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL1_BOVIN (ADP-ribosylation factor-like protein 1 OS=Bos taurus GN=ARL1 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.488e-41
Identity = 79/142 (55.63%), Postives = 106/142 (74.65%), Query Frame = 3
Query:    3 VHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 428
            + +GEV++T+PTIGFNVE V YKN+ F VWD+GGQ  +RP WR Y++NTD +IYVVDS DR+RIG +K E  A++++  +  ++++VFANKQDM+ AMTP E+   LGL  LK+RKW I  T A KG GL E ++WL  TLK
Sbjct:   37 LQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 178          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF2_SCHPO (Probable ADP-ribosylation factor OS=Schizosaccharomyces pombe GN=SPBC1539.08 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.488e-41
Identity = 78/140 (55.71%), Postives = 102/140 (72.86%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 428
            + + + T+PT+GFNVE V YKN+ F VWDVGGQ+K+RPLWRHYF  T GLI+VVDS D  RI +A+QE   II D  M + ++LV ANKQD+ GA++P ++ + L L  LK+R W++Q TCAL GDGL EGL WL+   K
Sbjct:   43 LNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAK 182          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL1_HUMAN (ADP-ribosylation factor-like protein 1 OS=Homo sapiens GN=ARL1 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.260e-40
Identity = 78/142 (54.93%), Postives = 105/142 (73.94%), Query Frame = 3
Query:    3 VHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 428
            + +GEV++T+PTIGFNVE V YKN+ F VWD+GGQ  +RP WR Y++NTD +IYVVDS DR+RIG +K E  A++++  +  ++++VFANKQDM+ AMT  E+   LGL  LK+RKW I  T A KG GL E ++WL  TLK
Sbjct:   37 LQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 178          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.806e-40
Identity = 71/139 (51.08%), Postives = 104/139 (74.82%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 425
            +G+V+ST+PTIGFNVE ++YKN+  TVWDVGGQ K+RPLW+HY++ ++ +I+VVDS DRER+ + K+E   ++    +  + ILVFANKQDM  AM   E+   L L  +K+RKW++Q   A++ DG+YEG DW+A++L
Sbjct:   47 LGDVVSTIPTIGFNVETIEYKNLSMTVWDVGGQHKIRPLWKHYYHGSNAVIFVVDSTDRERMDEVKEEIDNLLIQDELKGTQILVFANKQDMNNAMNTAEIVNSLDLNSIKDRKWYVQPCSAIRSDGIYEGFDWVANSL 185          
The following BLAST results are available for this feature:
BLAST of CK935520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
ARF1_BRARP4.183e-4457.75ADP-ribosylation factor 1 OS=Brassica rapa subsp. ... [more]
ARF_GIALA1.590e-4359.42ADP-ribosylation factor OS=Giardia lamblia PE=3 SV... [more]
ARF4_ARATH4.625e-4353.50Probable ADP-ribosylation factor At2g15310 OS=Arab... [more]
ARF3_DROME1.030e-4256.43ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARL1_RAT1.488e-4155.63ADP-ribosylation factor-like protein 1 OS=Rattus n... [more]
ARL1_MOUSE1.488e-4155.63ADP-ribosylation factor-like protein 1 OS=Mus musc... [more]
ARL1_BOVIN1.488e-4155.63ADP-ribosylation factor-like protein 1 OS=Bos taur... [more]
ARF2_SCHPO1.488e-4155.71Probable ADP-ribosylation factor OS=Schizosaccharo... [more]
ARL1_HUMAN1.260e-4054.93ADP-ribosylation factor-like protein 1 OS=Homo sap... [more]
ARFJ_DICDI2.806e-4051.08ADP-ribosylation factor J OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_G08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935520 ID=CK935520; Name=CK935520; organism=Citrus sinensis; type=EST; length=795bp
GGGTGCACATTGGTGAAGTTTTATCTACTGTTCCTACTATTGGTTTTAAT
GTCGAGAAAGTTCAGTATAAGAATGTCATATTCACTGTTTGGGATGTTGG
CGGACAAGAGAAATTGAGGCCACTATGGAGGCATTATTTTAATAACACTG
ATGGACTGATCTATGTTGTTGACTCCTTGGACCGGGAGAGAATTGGTAAA
GCAAAGCAAGAATTTCAGGCCATTATCAAAGATCCTTTTATGCTGAACAG
TGTCATTTTGGTGTTTGCCAATAAACAGGACATGAAAGGAGCAATGACCC
CAATGGAAGTATGTGAAGGATTAGGTCTCTTTGATCTCAAGAACAGGAAA
TGGCATATTCAAGGGACTTGTGCACTTAAAGGAGATGGACTTTACGAAGG
CTTGGATTGGTTGGCTTCAACACTTAAGGAGATGAGAGCTGCTGGATACT
CTTCAGTGGGCACCTCATCATTCTAGGGATCCAGGTTTACACGAGAGGAT
TTGAGGTAGATTGAATGATGAAACTCCTGAGTCATGCGTTTACTGGAGGG
AAGTCCCGTCTGTAATCAAATTCTTTTGGGTTGTATGTATCTAAGGCCAA
TGAAGCTTTTGATAGGGTGCTTACATTTGACCGTACTTGTTTGTGTGACT
TCCTGTAATGTATATTGAAGTGAACTGGACTCGGGGTTCAATACATGTCC
TTTATCCTCCTAAGATTCAAAATATGAGTTAAATCGCACACGCACGGGCA
CAGACACGTGTGCTTACCAGTGTGGTGGTGTAGGATAATTGAATC
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