CK935528

Overview
NameCK935528
Unique NameCK935528
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935528 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.609e-17
Identity = 57/110 (51.82%), Postives = 68/110 (61.82%), Query Frame = 1
Query:  511 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 825
            KFG     EAVWFK GA +     L+Y G    I    + A+ A ++VL+G  E YR+  G   E  D L+PG  FDPLGLA DP+  A LKVKEIKNGRLAMF+M GFF
Sbjct:    9 KFG-----EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFF 113          
BLAST of CK935528 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.101e-17
Identity = 58/171 (33.92%), Postives = 84/171 (49.12%), Query Frame = 1
Query:  349 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-------------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 822
            P YLTG +PGD G+DP GL++ P++   +   EL++ RWAMLG AG ++PE F   G    P+  W+  G          YF  +  + ++  +++  V +    +  I N              L   +  +PGG F+PL  A   +     K KEI NGRLAM A LGF
Sbjct:   63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPK--WYAAG-------KEEYFASSSTLFVIEFILSHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLE----AKEKEIANGRLAMLAFLGF 218          
BLAST of CK935528 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.176e-16
Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 1
Query:  637 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 825
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF
Sbjct:  166 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFF 230          
BLAST of CK935528 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.176e-16
Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 1
Query:  637 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 825
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF
Sbjct:  166 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFF 230          
BLAST of CK935528 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.176e-16
Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 1
Query:  637 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 825
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF
Sbjct:   15 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFF 79          
BLAST of CK935528 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.176e-16
Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 1
Query:  637 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 825
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF
Sbjct:  164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFF 228          
BLAST of CK935528 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.176e-16
Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 1
Query:  637 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 825
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF
Sbjct:  164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFF 228          
BLAST of CK935528 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.381e-15
Identity = 44/77 (57.14%), Postives = 54/77 (70.13%), Query Frame = 1
Query:  613 NLVFAVIAEIVLVGGAEYYRITN------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 825
            +L+  +  +++L+G  E YR  N      G DL D+L+PGGPFDPLGLA DPD F  LKVKEIKNGRLAM  MLGF+
Sbjct:   10 SLLAILATQVLLMGAVEGYRAGNTAPGQFGEDL-DRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFY 85          
BLAST of CK935528 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.409e-13
Identity = 53/164 (32.32%), Postives = 76/164 (46.34%), Query Frame = 1
Query:  340 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLE----DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 819
            +E P  LTGE P D G+DP  L+  PD +++ +  E+ H R AML   G I+PE   K          WF+ G   +DG  L +                + +    EY+R   G + +    D+ +PG  FDPL L  D       +  E+KNGRLA+ A+ G
Sbjct:  194 AEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELLGK--------GAWFEAGD-SVDGLKLGFI--------------TMAIAAPTEYWRGQGGFNWQKGELDRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAG 327          

HSP 2 Score: 74.7146 bits (182), Expect = 6.995e-13
Identity = 57/162 (35.19%), Postives = 75/162 (46.30%), Query Frame = 1
Query:  349 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR-----ITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 819
            P YLTGE  GD G+DP GL+  P  F + Q  E+ H R +ML   G ++PE              WF+    + D    N           FAV+A + +V   EY+R     + N  +  D+ +PG  FDPL L  +       K  EIKNGRLAM  M G
Sbjct:  381 PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLG--------NGAWFQ----IWDKVDFNR----------FAVVA-LQVVAPLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMNGMFG 512          
BLAST of CK935528 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.841e-13
Identity = 55/161 (34.16%), Postives = 79/161 (49.07%), Query Frame = 1
Query:  349 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLE----DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 819
            P +LTGE P D G+DP  ++  P  +++ +  E+ HAR +ML   G I+PE   K          WF+ G   +DG           I L F ++A   +    EY+R   G + +    D+ +PG  FDPL L  D  +      +EIKNGRLAM  +LG
Sbjct:  169 PAHLTGEYPADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIVGSIVPELLGK--------GAWFEVGN-SVDG-----------IKLGFILMA---IAAPTEYWRGNGGFNWDKGTADRSYPG--FDPLKLTTDYTK------REIKNGRLAMTGLLG 298          
The following BLAST results are available for this feature:
BLAST of CK935528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB22_PINSY1.609e-1751.82Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB24_PEA2.101e-1733.92Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB2F_SOLLC5.176e-1664.62Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC5.176e-1664.62Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC5.176e-1664.62Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC5.176e-1664.62Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC5.176e-1664.62Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_EUGGR4.381e-1557.14Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
LH18_EUGGR1.409e-1332.32Light-harvesting complex I LH38 proteins (Fragment... [more]
LH15_EUGGR1.841e-1334.16Light-harvesting complex I LH35 proteins (Fragment... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004554_F11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935528 ID=CK935528; Name=CK935528; organism=Citrus sinensis; type=EST; length=825bp
GGGGACTCTCATCTTCACCATTTCATTTCTCTAACACAAAGAAGCAGCAG
CAGCAACACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTG
CCTCCATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGT
GCTGTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCC
CGTTGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGC
CCGTCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCT
GACCGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCC
TGAGTACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTTTG
GTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATATGAATTG
ATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGA
AGCCTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCA
AGACTGGAGCTCTACTTCTTGATGGAAACACATTGAACTACTTCGGAAAG
AACATCCCAATCAACCTTGTTTTTGCTGTCATTGCTGAGATTGTTCTTGT
AGGTGGTGCTGAATATTATAGAATCACCAACGGTTTGGATTTGGAGGACA
AGCTTCACCCAGGTGGTCCATTTGACCCACTGGGATTAGCAAAGGATCCT
GACCAATTTGCATTGCTAAAAGTGAAGGAGATCAAGAATGGAAGACTTGC
AATGTTTGCCATGCTTGGTTTCTTT
back to top