CK935528

Overview
NameCK935528
Unique NameCK935528
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935528_ssr43 microsatellite CK935528_ssr43:43..54. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8493 contig Csv1_Contig8493:84..908. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK935528 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.140e-13
Identity = 38/66 (57.58%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:  637 EIVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 825
            +++L+G  E YR+     L   ED L+PGG FDPL    DP+ FA LKVKEIKNGRLAMF+M GFF
Sbjct:   22 QVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFF 87
The following BLAST results are available for this feature:
BLAST of CK935528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB21_RAPSA3.140e-1357.58Chlorophyll a-b binding of LHCII type 1 protein (F... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_F11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935528 ID=CK935528; Name=CK935528; organism=Citrus sinensis; type=EST; length=825bp
GGGGACTCTCATCTTCACCATTTCATTTCTCTAACACAAAGAAGCAGCAG
CAGCAACACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTG
CCTCCATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGT
GCTGTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCC
CGTTGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGC
CCGTCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCT
GACCGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCC
TGAGTACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTTTG
GTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATATGAATTG
ATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGA
AGCCTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCA
AGACTGGAGCTCTACTTCTTGATGGAAACACATTGAACTACTTCGGAAAG
AACATCCCAATCAACCTTGTTTTTGCTGTCATTGCTGAGATTGTTCTTGT
AGGTGGTGCTGAATATTATAGAATCACCAACGGTTTGGATTTGGAGGACA
AGCTTCACCCAGGTGGTCCATTTGACCCACTGGGATTAGCAAAGGATCCT
GACCAATTTGCATTGCTAAAAGTGAAGGAGATCAAGAATGGAAGACTTGC
AATGTTTGCCATGCTTGGTTTCTTT
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