CK935534

Overview
NameCK935534
Unique NameCK935534
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK935534 vs. ExPASy Swiss-Prot
Match: RLP24_YEAST (Ribosome biogenesis protein RLP24 OS=Saccharomyces cerevisiae GN=RLP24 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.204e-11
Identity = 33/90 (36.67%), Postives = 50/90 (55.56%), Query Frame = 2 
Query:   65 CKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVK--KKRRATKKPYSRSIVGATLEVIQK 328
            C F  +  YPG GI F+R+D++ F F  SKC + F  R  P KL WT  +RK   K++A ++     +RR     Y+R +V  TL+ + +
Sbjct:    6 CHFCSSPCYPGHGIMFVRNDAKEFRFCRSKCHKAFKQRRNPRKLKWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVATTLKAMAR 95
The following BLAST results are available for this feature:
BLAST of CK935534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RLP24_YEAST3.204e-1136.67Ribosome biogenesis protein RLP24 OS=Saccharomyces... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004554_E10 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935534 ID=CK935534; Name=CK935534; organism=Citrus sinensis; type=EST; length=743bp
GGGGGAAATTCTGAAGCCGCATCCAGCAACACCATCAGAAACCATGGTTC
TCAAGACTGAACTTTGCAAATTCAGCGGTGCCAAGATATACCCTGGTAAG
GGTATCAGATTTATTCGTTCAGACTCTCAGGTTTTCCTCTTTGCCAATTC
TAAATGCAAGAGGTACTTCCACAACCGATTGAAGCCATCGAAGCTTACAT
GGACAGCCATGTACAGGAAACAGCACAAGAAGGACATTGCTGCTGAGGCA
GTTAAGAAGAAGCGTCGTGCCACTAAGAAGCCCTATTCAAGATCTATAGT
TGGTGCCACCTTGGAAGTTATCCAGAAGAGAAGAACTGAGAAGCCAGAAG
TCCGAGATGCTGCACGGGAGGCTGCACTTCGTGAAATTAAGGAGAGGATC
AAGAAGACTAAGGATGAAAAGAAGGCAAAGAAAGCGGAGACGATGTCCAA
GTCACAGAAGTCTCAAGTCAAAAGTAGCGTGCCTAAGGGTGCCGCCCCGA
AGGGCCCCAAGCTAGGCGGTGGTGGTGGAAAGCGGTGAATTGCTTAGTCT
TTTCAAATCTGCAGATGAGTATAAACAATTAGAACTTAATTTCATGTTTC
TTGTATGGATTGATCAATCATGCAGACCAGATTTTTTTGTGGTTTTTGTT
TATGGTTTTGCATTGGGAGTTAATTTGCCTTTTACTTAATTGAATCAAAG
TTTTCTCAAGCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top