CK935542
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK935542 vs. ExPASy Swiss-Prot
Match: RBM3_RAT (Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 3.096e-14 Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 2 Query: 95 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328 E + FVGGL + T + +L + FS++G I E ++ DRET RSRGFGF+TF + + D + MNG++LDGR I V+ A Sbjct: 5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHA 82
BLAST of CK935542 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 9.008e-14 Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = 2 Query: 83 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331 S D R +VG LAW +L FS G ++++K++ DR++GRSRGFGFVT+ + + +AIE ++G +L+GR I V+ A+ Sbjct: 183 SFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 265
BLAST of CK935542 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 9.008e-14 Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = 2 Query: 83 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331 S D R +VG LAW +L FS G ++++K++ DR++GRSRGFGFVT+ + + +AIE ++G +L+GR I V+ A+ Sbjct: 189 SFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 271
BLAST of CK935542 vs. ExPASy Swiss-Prot
Match: RBM3_HUMAN (Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13 Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 2 Query: 95 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328 E + FVGGL + T + +L + FS++G I E ++ DRET RSRGFGF+TF + + A+ MNG++LDGR I V+ A Sbjct: 5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHA 82
BLAST of CK935542 vs. ExPASy Swiss-Prot
Match: HNRPG_PANTR (Heterogeneous nuclear ribonucleoprotein G OS=Pan troglodytes GN=RBMX PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.626e-13 Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 2 Query: 77 IASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328 + AD + F+GGL T + +L F YG I+E ++ DRET +SRGF FVTF +DA MNG++LDG+ I V +A Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84
BLAST of CK935542 vs. ExPASy Swiss-Prot
Match: HNRPG_HUMAN (Heterogeneous nuclear ribonucleoprotein G OS=Homo sapiens GN=RBMX PE=1 SV=3) HSP 1 Score: 74.3294 bits (181), Expect = 7.626e-13 Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 2 Query: 77 IASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328 + AD + F+GGL T + +L F YG I+E ++ DRET +SRGF FVTF +DA MNG++LDG+ I V +A Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84
BLAST of CK935542 vs. ExPASy Swiss-Prot
Match: HNRPG_RAT (Heterogeneous nuclear ribonucleoprotein G OS=Rattus norvegicus GN=Rbmx PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.219e-12 Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 2 Query: 77 IASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328 + AD + F+GGL T + +L F YG I+E ++ DRET +SRGF FVTF +D MNG++LDG+ I V +A Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQA 84
BLAST of CK935542 vs. ExPASy Swiss-Prot
Match: HNRPG_MOUSE (Heterogeneous nuclear ribonucleoprotein G OS=Mus musculus GN=Rbmx PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12 Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 2 Query: 77 IASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328 + AD + F+GGL T + +L F YG I+E ++ DRET +SRGF FVT +DA MNG++LDG+ I V +A Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDMNGKSLDGKAIKVEQA 84
BLAST of CK935542 vs. ExPASy Swiss-Prot
Match: RBM38_CHICK (RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.456e-12 Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 2 Query: 101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328 + FVGGL + TTDSSL + F +GDI E+ +I DR+TG+SRG+GFVT D + A + N +DGR VN A Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86
BLAST of CK935542 vs. ExPASy Swiss-Prot
Match: RBM24_XENTR (RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.456e-12 Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 2 Query: 101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328 + FVGGL + TTDSSL + F +GDI E+ +I DR+TG+SRG+GFVT D + A + N +DGR VN A Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86 The following BLAST results are available for this feature:
BLAST of CK935542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 58
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Sequences
The
following sequences are available for this feature:
EST sequence >CK935542 ID=CK935542; Name=CK935542; organism=Citrus sinensis; type=EST; length=744bpback to top |