CK935542

Overview
NameCK935542
Unique NameCK935542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935542 vs. ExPASy Swiss-Prot
Match: RBM3_RAT (Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.096e-14
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 2
Query:   95 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            E + FVGGL + T + +L + FS++G I E  ++ DRET RSRGFGF+TF + +   D +  MNG++LDGR I V+ A
Sbjct:    5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHA 82          
BLAST of CK935542 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.008e-14
Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = 2
Query:   83 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331
            S D   R +VG LAW     +L   FS  G ++++K++ DR++GRSRGFGFVT+   + + +AIE ++G +L+GR I V+ A+
Sbjct:  183 SFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 265          
BLAST of CK935542 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.008e-14
Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = 2
Query:   83 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331
            S D   R +VG LAW     +L   FS  G ++++K++ DR++GRSRGFGFVT+   + + +AIE ++G +L+GR I V+ A+
Sbjct:  189 SFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 271          
BLAST of CK935542 vs. ExPASy Swiss-Prot
Match: RBM3_HUMAN (Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 2
Query:   95 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            E + FVGGL + T + +L + FS++G I E  ++ DRET RSRGFGF+TF + +    A+  MNG++LDGR I V+ A
Sbjct:    5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHA 82          
BLAST of CK935542 vs. ExPASy Swiss-Prot
Match: HNRPG_PANTR (Heterogeneous nuclear ribonucleoprotein G OS=Pan troglodytes GN=RBMX PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.626e-13
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 2
Query:   77 IASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            +  AD   + F+GGL   T + +L   F  YG I+E  ++ DRET +SRGF FVTF      +DA   MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of CK935542 vs. ExPASy Swiss-Prot
Match: HNRPG_HUMAN (Heterogeneous nuclear ribonucleoprotein G OS=Homo sapiens GN=RBMX PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 7.626e-13
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 2
Query:   77 IASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            +  AD   + F+GGL   T + +L   F  YG I+E  ++ DRET +SRGF FVTF      +DA   MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of CK935542 vs. ExPASy Swiss-Prot
Match: HNRPG_RAT (Heterogeneous nuclear ribonucleoprotein G OS=Rattus norvegicus GN=Rbmx PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.219e-12
Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 2
Query:   77 IASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            +  AD   + F+GGL   T + +L   F  YG I+E  ++ DRET +SRGF FVTF      +D    MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQA 84          
BLAST of CK935542 vs. ExPASy Swiss-Prot
Match: HNRPG_MOUSE (Heterogeneous nuclear ribonucleoprotein G OS=Mus musculus GN=Rbmx PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12
Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 2
Query:   77 IASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            +  AD   + F+GGL   T + +L   F  YG I+E  ++ DRET +SRGF FVT       +DA   MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of CK935542 vs. ExPASy Swiss-Prot
Match: RBM38_CHICK (RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.456e-12
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 2
Query:  101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CK935542 vs. ExPASy Swiss-Prot
Match: RBM24_XENTR (RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.456e-12
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 2
Query:  101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
The following BLAST results are available for this feature:
BLAST of CK935542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RBM3_RAT3.096e-1447.44Putative RNA-binding protein 3 OS=Rattus norvegicu... [more]
ROC1_NICSY9.008e-1442.1729 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_NICPL9.008e-1442.1730 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
RBM3_HUMAN1.177e-1347.44Putative RNA-binding protein 3 OS=Homo sapiens GN=... [more]
HNRPG_PANTR7.626e-1342.86Heterogeneous nuclear ribonucleoprotein G OS=Pan t... [more]
HNRPG_HUMAN7.626e-1342.86Heterogeneous nuclear ribonucleoprotein G OS=Homo ... [more]
HNRPG_RAT2.219e-1241.67Heterogeneous nuclear ribonucleoprotein G OS=Rattu... [more]
HNRPG_MOUSE4.943e-1241.67Heterogeneous nuclear ribonucleoprotein G OS=Mus m... [more]
RBM38_CHICK6.456e-1248.68RNA-binding protein 38 OS=Gallus gallus GN=RBM38 P... [more]
RBM24_XENTR6.456e-1248.68RNA-binding protein 24 OS=Xenopus tropicalis GN=rb... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_E01 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935542 ID=CK935542; Name=CK935542; organism=Citrus sinensis; type=EST; length=744bp
GGGGATCCCGCAGCGGTGCTGTCTCTTAGATTTTTCTTGTAATTCCTTCT
TAGTCCCCATTTCAAGTTTTCTCCTAATAGCTTCAGCCGATGTCGAGTTT
CGGTGCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCA
TGAGGCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGATTATTAACG
ATCGCGAGACTGGAAGATCCAGAGGATTTGGATTCGTTACCTTCCGCGAT
GAGAAGTCGATGAGGGACGCAATCGAAGGCATGAACGGCCAGAATCTGGA
CGGCCGTAACATAACAGTCAACGAGGCCCAGTCCCGTGGAAGCGGTGGCG
GTGGCGGTGGCGGTTACGGAAGCCGTGGCGGTGGTGGATATGGAGGTGGT
GGACGCCGTGAAAGTGGTGGTGGCGGTGGATACGGTGGGAGCCGCGGATA
CGGAGGTGGCGGCGGTGGATATGGTGGCCGCCGTGAAGGTGGTTACAGCC
GTGACGGTGGATATGGCGGTGATGGTGGTTCCCGATACTCAAGGAGCGGT
GCTTCTGATGGCGGTAGCTGGAGGAACTAGGGTTTTGTAGGATAAATTAG
GAGTTGTATGTTACCGTTCCGTGTTTTGATATTTTCCTTGGGTTATGATG
TGTCGTTTTGATCGGTTCCTGTTATCCTGTGTTGTTTCGTTCTCCCTGTT
TGGTTAATTGTTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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