CK935542

Overview
NameCK935542
Unique NameCK935542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935542 vs. ExPASy Swiss-Prot
Match: RBM24_DANRE (RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.453e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 2
Query:  101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            + FVGGL + TTDSSL + F  +G+I E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPN-PIIDGRKANVNLA 86          
BLAST of CK935542 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 2
Query:  101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            + F+GGL W TTD SL + F  +G++L+  ++ D  TGRSRGFGF+TF++ K + + +      +LDG+ I    A
Sbjct:  164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMS--KEHHLDGKIIDPKRA 237          
BLAST of CK935542 vs. ExPASy Swiss-Prot
Match: RBM24_HUMAN (RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 2
Query:  101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            + FVGGL + TTD+SL + F  +G+I E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CK935542 vs. ExPASy Swiss-Prot
Match: RB27C_DROME (Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster GN=Hrb27C PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 2
Query:   89 DVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNG-QNLDGRNI 313
            D   + FVGGL+W TT  +L   F  +GDI++  ++ + E+GRSRGFGFVTF D  ++   ++  NG   LDGR I
Sbjct:    4 DERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQ--NGPHTLDGRTI 77          
BLAST of CK935542 vs. ExPASy Swiss-Prot
Match: DAZP1_MOUSE (DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 2
Query:   80 ASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNI 313
            A AD   + FVGGL W+TT  +L   FS YG++++  I+ D+ T +SRGFGFV F+D   +   +       LDGRNI
Sbjct:    4 AGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV-GTVLASRPHTLDGRNI 80          
BLAST of CK935542 vs. ExPASy Swiss-Prot
Match: RBY1B_MOUSE (RNA-binding motif protein, Y chromosome, family 1 member B OS=Mus musculus GN=Rbmy1b PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.138e-11
Identity = 33/85 (38.82%), Postives = 50/85 (58.82%), Query Frame = 2
Query:   77 IASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331
            +A  D   + F+GGL   T   +L E F  +G +    ++ DRET +SRGF F+TFR     ++A++ MNG  LDG+ I V +A+
Sbjct:    1 MAETDQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPADAKNAVKEMNGVILDGKRIKVKQAR 85          
BLAST of CK935542 vs. ExPASy Swiss-Prot
Match: RBM38_XENLA (RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.322e-11
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 2
Query:  101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            + FVGGL + TTD+SL + F  +GDI E+ +I DR+T +SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CK935542 vs. ExPASy Swiss-Prot
Match: MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 9.322e-11
Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 2
Query:  101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNI 313
            + F+GGL+W T+  SL + F  YGDI E+ ++ D  T RSRGFGFVTF D  S+ D +       LDG+ +
Sbjct:   30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSV-DKVLTQGTHELDGKKV 99          
The following BLAST results are available for this feature:
BLAST of CK935542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RBM24_DANRE2.453e-1147.37RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=... [more]
YHKF_SCHPO4.185e-1140.79Uncharacterized RNA-binding protein C660.15 OS=Sch... [more]
RBM24_HUMAN4.185e-1146.05RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE... [more]
RB27C_DROME5.465e-1144.74Heterogeneous nuclear ribonucleoprotein 27C OS=Dro... [more]
DAZP1_MOUSE5.465e-1143.59DAZ-associated protein 1 OS=Mus musculus GN=Dazap1... [more]
RBY1B_MOUSE7.138e-1138.82RNA-binding motif protein, Y chromosome, family 1 ... [more]
RBM38_XENLA9.322e-1146.05RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 ... [more]
MSIR6_DROME9.322e-1145.07RNA-binding protein Musashi homolog Rbp6 OS=Drosop... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_E01 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935542 ID=CK935542; Name=CK935542; organism=Citrus sinensis; type=EST; length=744bp
GGGGATCCCGCAGCGGTGCTGTCTCTTAGATTTTTCTTGTAATTCCTTCT
TAGTCCCCATTTCAAGTTTTCTCCTAATAGCTTCAGCCGATGTCGAGTTT
CGGTGCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCA
TGAGGCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGATTATTAACG
ATCGCGAGACTGGAAGATCCAGAGGATTTGGATTCGTTACCTTCCGCGAT
GAGAAGTCGATGAGGGACGCAATCGAAGGCATGAACGGCCAGAATCTGGA
CGGCCGTAACATAACAGTCAACGAGGCCCAGTCCCGTGGAAGCGGTGGCG
GTGGCGGTGGCGGTTACGGAAGCCGTGGCGGTGGTGGATATGGAGGTGGT
GGACGCCGTGAAAGTGGTGGTGGCGGTGGATACGGTGGGAGCCGCGGATA
CGGAGGTGGCGGCGGTGGATATGGTGGCCGCCGTGAAGGTGGTTACAGCC
GTGACGGTGGATATGGCGGTGATGGTGGTTCCCGATACTCAAGGAGCGGT
GCTTCTGATGGCGGTAGCTGGAGGAACTAGGGTTTTGTAGGATAAATTAG
GAGTTGTATGTTACCGTTCCGTGTTTTGATATTTTCCTTGGGTTATGATG
TGTCGTTTTGATCGGTTCCTGTTATCCTGTGTTGTTTCGTTCTCCCTGTT
TGGTTAATTGTTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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