CK935545

Overview
NameCK935545
Unique NameCK935545
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935545 vs. ExPASy Swiss-Prot
Match: FB280_ARATH (Putative F-box protein At5g42430 OS=Arabidopsis thaliana GN=At5g42430 PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.079e-12
Identity = 58/241 (24.07%), Postives = 111/241 (46.06%), Query Frame = 2
Query:   35 NYNVSMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARAPFSIMILEKFCK----RIYT----------NSLVPLFTLNQGDKERLSLLSSCNGLICLHE-FSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTN--TWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFR 706
            N   + + +P+ +++++ SRLP K+I +  CV K W S+   PYF ++ L  +     +L  F K    R ++          +S V     +    + L++ +  +GL+     +  K D+I  CNP  G + +LP+L      TR   F ++    Q+KV+ +         ++    + + T+GT    WR I   P +    +    +N AL++ A++ D    ++  FD+  E+F+
Sbjct:    2 NGEENSDSIPIDLILEILSRLPAKSITRFHCVSKLWGSMLCRPYFNELFLTISSARPRLLFAFSKHGEWRFFSSPQPQNPYGKSSFVATADFHTKFSQNLNICNYTSGLVYFSAMWITKADVI--CNPSTGHYAMLPKLLLTYGETR-SFFLFDPVGKQFKVLLMNKIN-----NNETKDIHILTLGTRKVRWRKIQQCPLIHIVSHEWICINGALYYIAYNIDDFLGYIVCFDVRSEKFK 234          
BLAST of CK935545 vs. ExPASy Swiss-Prot
Match: FB145_ARATH (Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.132e-11
Identity = 68/283 (24.03%), Postives = 128/283 (45.23%), Query Frame = 2
Query:   59 LPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARAPFSIM--------ILEKFCKR-IYTNSLVPLFTLNQGDKERLSLLSSCNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGDLPYV--LNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCD-GFLEPNLDIWIMKRYGVKESWTK 871
            LP  + +++  RL +K + + +CVCKTW  L +DP F + +   +P   +        +L+   K  + TN L   F L+Q   +  + +  C+G +C+   + K   + V NP      ++P        + I GFGY+   + YKV+   ++ D+  +S++     V    T +W     + Y     +   G FL+  L+W A+        +C F+L   ++R+ P P   +      + S  +GV+   L + +    +  + I +M++ G   SW+K
Sbjct:    5 LPEELAIEILVRLSMKDLARFRCVCKTWRDLINDPGFTETYRDMSPAKFVSFYDKNFYMLDVEGKHPVITNKLD--FPLDQSMIDESTCVLHCDGTLCV---TLKNHTLMVWNPFSKQFKIVPN-PGIYQDSNILGFGYDPVHDDYKVV---TFIDRLDVSTA----HVFEFRTGSWGESLRISYPDWHYRDRRGTFLDQYLYWIAYRSSADRFILC-FNLSTHEYRKLPLPVYNQ-----GVTSSWLGVTSQKLCITEYEMCKKEIRISVMEKTG---SWSK 265          
BLAST of CK935545 vs. ExPASy Swiss-Prot
Match: FB34_ARATH (Putative F-box protein At1g33530 OS=Arabidopsis thaliana GN=At1g33530 PE=4 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.521e-11
Identity = 68/297 (22.90%), Postives = 120/297 (40.40%), Query Frame = 2
Query:   56 DLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIH--LARAPFSIMILEKFCKRIYTNSLVPLF--------TLNQGDKERLSLLSSCNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWR----NIGDLPY--VLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLY-------LCDGFLEPNLD--IWIMKRYGVKESWTK 871
            +LP  ++ ++  RLP+K ++++K + K W SL    + A+ H  L    + +  ++   +R  + S+   F         +N    + L +  SCNGL+C++E       I + NP+ G    L   +   ++    GFG +  T  YKV+ +  +     +        V  + TN WR      G +P   +        F+N +L W   S       M   DL  E+FR    P   +           V VS G++Y       LC   +   L   +W++ +  + E W +
Sbjct:   96 ELPDVLVEEILQRLPVKYLVRLKSISKGWKSLIESDHLAEKHLRLLEKKYGLKEIKITVERSTSKSICIKFFSRRSGMNAINSDSDDLLRVPGSCNGLVCVYELD--SVYIYLLNPMTGVTRTLTPPRGTKLSV---GFGIDVVTGTYKVMVLYGFDRVGTV--------VFDLDTNKWRQRYKTAGPMPLSCIPTPERNPVFVNGSLFWLLASDFSEILVM---DLHTEKFRTLSQPNDMD----------DVDVSSGYIYMWSLEDRLCVSNVRQGLHSYVWVLVQDELSEKWER 366          
BLAST of CK935545 vs. ExPASy Swiss-Prot
Match: FBW1_ARATH (F-box/WD-40 repeat-containing protein 1 OS=Arabidopsis thaliana GN=FBW1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.292e-11
Identity = 67/291 (23.02%), Postives = 124/291 (42.61%), Query Frame = 2
Query:   59 LPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLA-------RAPFSIMILEKFCKRIYTNSLVPLFTLNQGDKERLSLLSSCNG-LICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCT-NQYKVIQ----ILSYKDQAAISSSKPQVEVHTIGTNTWRNIG-DLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFLEPNLDIWIMKRY--GVKESWTKEFVI 883
            LP  +  ++  R+P K++L++K  CK W +L +D  F   HLA       R    + I+        + SL   F +    K  +  +  C+G L+C+    ++   ++V NP L     +  L          G GY+  + + YK+++    + +  + A   S KP+V+++ + +N+W+     L + +     G  L   ++W A  + K   F+ SF+   E F      P R Y+    + ++S         L        +D+W+  +   GV   WTK F +
Sbjct:   38 LPFELFEEILCRVPTKSLLRLKLTCKRWLALFNDKRFIYKHLALVREHIIRTNQMVKIINPVVGACSSFSLPNKFQV----KGEIYTMVPCDGLLLCI----FETGSMAVWNPCLNQVRWIFLLNPSFRGCSCYGIGYDGLSRDSYKILRFVNGVFTKNEYANTGSYKPEVDIYELKSNSWKTFKVSLDWHVVLRCKGLSLKGNMYWIAKWNRKPDIFIQSFNFSTETFEPLCSLPVR-YD-VHNVVALSAFKGDNLSLLHQSKETSKIDVWVTNKVKNGVSILWTKLFSV 318          
BLAST of CK935545 vs. ExPASy Swiss-Prot
Match: FB57_ARATH (Putative F-box protein At1g53550 OS=Arabidopsis thaliana GN=At1g53550 PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.292e-11
Identity = 54/238 (22.69%), Postives = 109/238 (45.80%), Query Frame = 2
Query:   53 EDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARAPFS--IMILEKFCKRIYTNSLVPLFTLNQGDKERLSLLSS-----------CNGLICLHEFSYKQDIISVCNPILGDHLVLP-----QLKRKNVATRIR-GFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIG--DLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQF 703
            + +P+ +++++ SRL ++ I + +CV K W S+   P + ++   ++  +  ++ + K  + ++ NS    F  N       SL  +            +GLIC            + NP  G+++ LP     ++  + +  ++R  FGY+    Q+KV++I      +   SS+ QV     G  +WRN     + Y+L     G  +N  L++ A   +++   +C FD+  E+F
Sbjct:   33 DPIPVDLVINILSRLSLECIARCRCVSKLWSSIIRRPNYNQLFPVKSSATPRLLFVFKVARELFFNSSPQHFNPNNSSLVATSLQKTSSTRFSQLCRPVHGLICSQHIEENYLFALISNPTTGEYIALPKQRMEEMNSETIIEKVRYSFGYDPIDKQFKVLRITWLHRGSHEWSSEYQVLTLGFGNISWRNTQCCVVHYLLEDS--GICINGVLYYPARLDNRKYTIVC-FDVMTEKF 267          
BLAST of CK935545 vs. ExPASy Swiss-Prot
Match: FB55_ARATH (F-box protein At1g52490 OS=Arabidopsis thaliana GN=At1g52490 PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.292e-11
Identity = 71/296 (23.99%), Postives = 134/296 (45.27%), Query Frame = 2
Query:   59 LPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPY-FAKIHLARA---PFSIMILEKFCKRIYTNSLVPLFTLNQGDKERLSLLSSCN-----------GLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRG---FGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTN--TWRNI-GDLPY-VLNQPYYGAFLNSALHWYA----HSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFLEPNLDIWIMKRYGVKESWT 868
            LPL ++V++  +LP K++++ +CV K W  + S    F +  +AR+   P   + +  F +           T +Q  K ++S++   N           G IC     Y  D++++ NP     L LP+++   ++ +      FGY+H  N+YKV+ +++  D   ++ +     V T+G +   WR I G++ Y +++    G  ++  +++ A     + +    FM SFD+  E+F     P T    KC      +     G    C    E N+ +WIM+    K+ W+
Sbjct:   55 LPLDLIVEILKKLPTKSLMRFRCVSKPWSFIISKRRDFVESIMARSLRQPPHKLPVFIFHQCDPGTFFTVSSTFSQSTKPKVSIMPGRNHYNAFRYQYVRGFICCSSSVY--DLVTIYNPTTRQCLPLPKIESMVLSPKRHKHCYFGYDHVMNEYKVLAMVN--DSQELTQT---FHVFTLGRDCPQWRKIRGNIDYELISVSRAGVCIDGTIYYVAVRRKDNENYGELFMMSFDVKSERFYHVRTPETLWSPKCTERGLFNHQGKLG----CISSNENNISMWIMEN-AEKQEWS 338          
BLAST of CK935545 vs. ExPASy Swiss-Prot
Match: FB112_ARATH (F-box protein At2g17830 OS=Arabidopsis thaliana GN=At2g17830 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.616e-11
Identity = 75/319 (23.51%), Postives = 133/319 (41.69%), Query Frame = 2
Query:   50 MEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARA--------PFSIMILEKFCKRIYT------NSLVPLFT-----------LNQGDKERLSLLSSCNG-LICL-HEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKP-----QVEVHTIGTNTWRNIGDL--PYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQF---RQFPGPPTREYEKCRPINSISVGVSG-GFLYLCDGFLEPNLDIWIMKRYGVKE-SWTKEFVIVN 889
            M DLP  +L ++ SR+P+ ++  ++  CK W+ L  D  F K  +  A         F ++++  F  R+Y       N + P FT            NQ   + +S +  C+G L+C+  + +++   + V NP  G    + Q +       I   GY+   N     +IL  KDQ     S P     + E+++  +N+W+ + D+   + ++  + G  +    +WYA        F+  FD   E+F      P   T  +     +   SVG      L+  D  L   ++IW+  +    E  W K F+ V+
Sbjct:    4 MSDLPRDLLAEILSRVPLASLRSVRFTCKKWNDLSKDRSFLKKQIVEAKKKQLKSKEFEVIMMRNF--RVYLTSVDLHNDVNPSFTPKGTLTSFSDDANQHQVDNVSSVFHCDGLLLCITKDLNFR---LVVWNPYFGQTRWI-QPRNSYHIKDIYAIGYDENKNH----KILRLKDQYYDYDSHPRARICEFELYSFESNSWKVVLDVSPDWYIHSYHRGLSVKGNTYWYATEKHGYVNFLICFDFTTEKFGPRLPLPFNATESFTYDDVVTLSSVGEEQLALLFQSDATL--MMEIWVTSKVDPTEVLWNKLFLAVD 310          
BLAST of CK935545 vs. ExPASy Swiss-Prot
Match: DOR_ARATH (F-box protein DOR OS=Arabidopsis thaliana GN=DOR PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.616e-11
Identity = 59/248 (23.79%), Postives = 111/248 (44.76%), Query Frame = 2
Query:   47 SMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARA---PFSIMILEKFCKRIY------------TNSLVPLFTLNQGDKERLSLLSSCNGLI------CLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQIL----SYKDQAAISSSKPQVEVHTIGTN--TWRNIG-DLPYVLNQPYYGAFLNSALHWYAHSH-DKRTAFMCSFDLGDEQF 703
            + E +P+ +++++FSR P+K+I + +CV K W S+   PYF +++L ++   P  +   +K  +  +            ++ L   F +      R +++S   GL+       L      + + ++CNP  G  L LP+ K +        FGY+    Q+KV+ +      YK+   +          T+GT   +WR I   +P+V      G  +N  L++ A +     T  +  FD+  E+F
Sbjct:   21 NFEPIPIDLVIEIFSRSPVKSIARCRCVSKLWASILRLPYFTELYLTKSCARPRLLFACQKHRELFFFSTPQPHNPNESSSPLAASFHMKIPFDGRFNIISPIGGLVFVRYEQILKGRKTPEFVSAICNPSTGQSLTLPKPKTRKRIWGTSHFGYDPIEKQFKVLSMNIGDGVYKEHYVL----------TLGTENLSWRRIECSIPHVHGSK--GICINGVLYYRAKADMFSGTLMIVCFDVRFEKF 256          
The following BLAST results are available for this feature:
BLAST of CK935545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
FB280_ARATH5.079e-1224.07Putative F-box protein At5g42430 OS=Arabidopsis th... [more]
FB145_ARATH1.132e-1124.03Putative F-box protein At3g16210 OS=Arabidopsis th... [more]
FB34_ARATH2.521e-1122.90Putative F-box protein At1g33530 OS=Arabidopsis th... [more]
FBW1_ARATH3.292e-1123.02F-box/WD-40 repeat-containing protein 1 OS=Arabido... [more]
FB57_ARATH3.292e-1122.69Putative F-box protein At1g53550 OS=Arabidopsis th... [more]
FB55_ARATH3.292e-1123.99F-box protein At1g52490 OS=Arabidopsis thaliana GN... [more]
FB112_ARATH5.616e-1123.51F-box protein At2g17830 OS=Arabidopsis thaliana GN... [more]
DOR_ARATH5.616e-1123.79F-box protein DOR OS=Arabidopsis thaliana GN=DOR P... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_E04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935545 ID=CK935545; Name=CK935545; organism=Citrus sinensis; type=EST; length=890bp
GGGGGCAAAAGAAGAAGATGGTGTATTGGCAACTAATTATAATGTGTCCA
TGGAAGATCTTCCTTTGCCAATTCTTGTTGATGTTTTCTCCCGGCTCCCA
ATCAAGACCATTCTTCAAATCAAGTGTGTTTGTAAAACCTGGCACAGCTT
ATGCTCGGATCCTTATTTCGCCAAAATACATCTTGCAAGAGCACCGTTTT
CAATAATGATTCTCGAGAAGTTCTGTAAGAGGATCTACACAAATTCCCTT
GTGCCCTTGTTTACATTGAACCAAGGTGACAAGGAGAGGCTGTCTTTGCT
ATCTTCATGCAATGGCTTGATTTGCTTGCATGAGTTTTCTTACAAGCAAG
ATATCATTTCTGTGTGTAATCCAATTCTTGGCGATCACTTGGTCCTTCCA
CAACTTAAAAGGAAAAATGTTGCTACAAGAATACGTGGCTTCGGCTACAA
TCACTGTACTAATCAATACAAGGTGATTCAAATTCTCAGTTACAAAGATC
AAGCAGCGATCTCCTCCAGTAAGCCTCAGGTTGAAGTACATACAATTGGT
ACGAATACGTGGAGAAACATTGGAGACCTTCCGTATGTACTTAATCAACC
ATATTATGGAGCTTTTCTGAACAGTGCTCTCCATTGGTACGCTCATTCAC
ACGATAAGAGAACGGCGTTTATGTGTTCTTTTGATCTTGGAGATGAGCAG
TTTCGACAATTTCCAGGTCCCCCAACTCGAGAATATGAAAAATGTAGGCC
CATTAACAGCATTTCTGTGGGAGTTTCAGGAGGGTTTCTGTATTTATGTG
ATGGTTTCTTGGAACCTAATCTTGATATTTGGATAATGAAGAGGTATGGG
GTGAAGGAATCTTGGACTAAGGAGTTTGTTATAGTAAACT
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