CK935549

Overview
NameCK935549
Unique NameCK935549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935549 vs. ExPASy Swiss-Prot
Match: NFYA_DICDI (Nuclear transcription factor Y subunit alpha OS=Dictyostelium discoideum GN=nfyA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.240e-17
Identity = 47/80 (58.75%), Postives = 53/80 (66.25%), Query Frame = 2
Query:  611 VYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFL----NTKQLNDNAANSAEKGMNSGA 838
            +YVNAKQY  IL+RR +RAK E E K+ K RK Y HESRHQHA+RR RGCGGRFL      K    NAAN+A    N  A
Sbjct:  231 LYVNAKQYNRILKRRAARAKLESENKLPKTRKAYQHESRHQHAIRRQRGCGGRFLTKADQAKLDAQNAANAAAAAANPNA 310          
BLAST of CK935549 vs. ExPASy Swiss-Prot
Match: HAP2_YEAST (Transcriptional activator HAP2 OS=Saccharomyces cerevisiae GN=HAP2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.962e-15
Identity = 41/76 (53.95%), Postives = 52/76 (68.42%), Query Frame = 2
Query:  614 YVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKQLNDNAANSAEKGMNSGAD 841
            YVNAKQY  IL+RR +RAK E + ++ + RKPYLHESRH+HAMRR RG GGRFL   ++   A  S + G +   D
Sbjct:  162 YVNAKQYYRILKRRYARAKLEEKLRISRERKPYLHESRHKHAMRRPRGEGGRFLTAAEI--KAMKSKKSGASDDPD 235          
BLAST of CK935549 vs. ExPASy Swiss-Prot
Match: NFYA_RAT (Nuclear transcription factor Y subunit alpha OS=Rattus norvegicus GN=Nfya PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.301e-14
Identity = 38/59 (64.41%), Postives = 46/59 (77.97%), Query Frame = 2
Query:  611 VYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKQ 787
            +YVNAKQY  IL+RRQ+RAK E E K+ K R+ YLHESRH+HAM R RG GGRF + K+
Sbjct:  259 LYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKE 317          
BLAST of CK935549 vs. ExPASy Swiss-Prot
Match: NFYA_MOUSE (Nuclear transcription factor Y subunit alpha OS=Mus musculus GN=Nfya PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.301e-14
Identity = 38/59 (64.41%), Postives = 46/59 (77.97%), Query Frame = 2
Query:  611 VYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKQ 787
            +YVNAKQY  IL+RRQ+RAK E E K+ K R+ YLHESRH+HAM R RG GGRF + K+
Sbjct:  264 LYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKE 322          
BLAST of CK935549 vs. ExPASy Swiss-Prot
Match: NFYA_HUMAN (Nuclear transcription factor Y subunit alpha OS=Homo sapiens GN=NFYA PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.301e-14
Identity = 38/59 (64.41%), Postives = 46/59 (77.97%), Query Frame = 2
Query:  611 VYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKQ 787
            +YVNAKQY  IL+RRQ+RAK E E K+ K R+ YLHESRH+HAM R RG GGRF + K+
Sbjct:  265 LYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKE 323          
BLAST of CK935549 vs. ExPASy Swiss-Prot
Match: NFYA_BOVIN (Nuclear transcription factor Y subunit alpha OS=Bos taurus GN=NFYA PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.301e-14
Identity = 38/59 (64.41%), Postives = 46/59 (77.97%), Query Frame = 2
Query:  611 VYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKQ 787
            +YVNAKQY  IL+RRQ+RAK E E K+ K R+ YLHESRH+HAM R RG GGRF + K+
Sbjct:  259 LYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKE 317          
BLAST of CK935549 vs. ExPASy Swiss-Prot
Match: HAP2_SCHPO (Transcriptional activator hap2 OS=Schizosaccharomyces pombe GN=hap2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.219e-14
Identity = 42/82 (51.22%), Postives = 57/82 (69.51%), Query Frame = 2
Query:  611 VYVNAKQYRGILRRRQSRAKAELEKKVIKA-RKPYLHESRHQHAMRRARGCGGRFLNTKQLN----DNAANSAEKGMNSGAD 841
            +YVNAKQY  IL+RR++RAK E   + ++  +KPYLHESRH+HAMRR RG GGRFL   +++      AA +A  G ++G D
Sbjct:   10 LYVNAKQYHRILKRREARAKLEERLRGVQTTKKPYLHESRHKHAMRRPRGPGGRFLTADKVSKLRAQEAAEAAANGGSTGDD 91          
BLAST of CK935549 vs. ExPASy Swiss-Prot
Match: HAP2_KLULA (Transcriptional activator HAP2 OS=Kluyveromyces lactis GN=HAP2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.899e-14
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 2
Query:  614 YVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKQL 790
            YVNAKQY  IL+RR +RAK E   K+ + R+PYLHESRH+HAMRR RG GGRFL   ++
Sbjct:  188 YVNAKQYYRILKRRYARAKLEENLKISRERRPYLHESRHKHAMRRPRGQGGRFLTAAEM 246          
The following BLAST results are available for this feature:
BLAST of CK935549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
NFYA_DICDI6.240e-1758.75Nuclear transcription factor Y subunit alpha OS=Di... [more]
HAP2_YEAST9.962e-1553.95Transcriptional activator HAP2 OS=Saccharomyces ce... [more]
NFYA_RAT1.301e-1464.41Nuclear transcription factor Y subunit alpha OS=Ra... [more]
NFYA_MOUSE1.301e-1464.41Nuclear transcription factor Y subunit alpha OS=Mu... [more]
NFYA_HUMAN1.301e-1464.41Nuclear transcription factor Y subunit alpha OS=Ho... [more]
NFYA_BOVIN1.301e-1464.41Nuclear transcription factor Y subunit alpha OS=Bo... [more]
HAP2_SCHPO2.219e-1451.22Transcriptional activator hap2 OS=Schizosaccharomy... [more]
HAP2_KLULA2.899e-1462.71Transcriptional activator HAP2 OS=Kluyveromyces la... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_D02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935549 ID=CK935549; Name=CK935549; organism=Citrus sinensis; type=EST; length=843bp
GGGGACAGTATCTGTGTCTCTCTTAAGGTTGCAGAGAAATACAGACTAAA
CTAAAACGAATCAAAGTCGGTGACTTTCTTTTAGAATCTCTATGCTCTGC
TTCTCATCTCACAGTGCAGGATTAGGCTGTTTATACTATTAGAGGATTAG
GTTGTGAATGATGCCGGCAAAACCTGATGAAAATCGGCAGTTAGACCGTG
GTGCTCAGAGTGTCTCGCAATCAGCCATCTATTCCCAGCAGCCTTGGTGG
AGTGGGACAGGAACTGGTGCCTCCTTAGCTGAAGCAGCAGCTTCTAAATC
TTCAAGGGAACAACCAAATGGTTCTGTTGTAAATGGTGCCACCTATTCAC
AAGATGGGATTAATGGACAAGAACATGCGCATCTCAAACATATTCCATCC
TCAACACCTCTAGCTATGGGCGAACGCCTTGAACAAAATTCCCAAATGGA
GCTAGTTGGTCACTCAATTGTTTTGACATCATATCCATATACAGATCCAC
AACATGTTGGAGTAATTACCCCCTACGTGCCACAAGTTATGATTCCTCCT
CAGTTATATGGAATGCATCAAGCAAGAATGCCTTTGCCTCTCGAAATGGA
AGAGGAGCCTGTTTATGTGAATGCAAAACAGTATAGAGGTATTTTGAGAC
GAAGACAGTCGCGTGCTAAGGCTGAGCTTGAAAAGAAAGTGATTAAAGCG
AGAAAGCCTTATCTTCATGAGTCCAGACATCAACATGCAATGAGAAGGGC
TAGGGGTTGTGGAGGCCGTTTTCTCAATACTAAGCAGCTCAATGACAATG
CTGCAAACTCTGCAGAAAAAGGTATGAATTCTGGTGCAGACGG
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