CK935551

Overview
NameCK935551
Unique NameCK935551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12214 contig Csv1_Contig12214:484..1308. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK935551 vs. ExPASy Swiss-Prot
Match: HPPA1_RHILT (Pyrophosphate-energized proton pump 1 (Fragment) OS=Rhizobium leguminosarum bv. trifolii GN=hppA1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.805e-19
Identity = 55/138 (39.86%), Postives = 76/138 (55.07%), Query Frame = 3 
Query:  300 GSAALVSLALFGAFVSRAAISTVD----------------VLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSG 665
            GSA L +L LF A+ +  +    +                +  P V  GL+ G ++PY F  + M +VG AA  +VEEVRRQF   PG+M GT KPDY   V + T A+I+EM+ P  L +L PL+V  +FGV  +SG
Sbjct:    1 GSAGLGALVLFAAYANDLSYFAANGDTYPYFKDIGEISFSLANPYVVAGLLFGGLIPYLFGGIAMTAVGKAASAIVEEVRRQFREKPGIMAGTEKPDYGRAVDLLTKAAIREMVIPSLLPVLAPLVV--YFGVLLISG 136
The following BLAST results are available for this feature:
BLAST of CK935551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
HPPA1_RHILT3.805e-1939.86Pyrophosphate-energized proton pump 1 (Fragment) O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004554_D05 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935551 ID=CK935551; Name=CK935551; organism=Citrus sinensis; type=EST; length=825bp
GGGATGTTATTTTTGGCCTTGCATTGGGATACAAATCTGTTATTATTCCT
ATTTTTGCCATTGCAGTCAGCATCTTTGTCAGTTTTAGTTTTGCTGCCAT
GTATGGTATTGCAGTTGCCGCCCTTGGAATGCTAAGCACCATAGCTACTG
GATTGGCTATTGATGCATATGGTCCCATCAGTGACAATGCTGGAGGCATT
GCTGAGATGGCAGGCATGAGCCACAGAATCAGAGAGAGAACTGATGCTCT
TGATGCTGCAGGAAACACCACTGCAGCTATTGGAAAGGGTTTCGCCATTG
GTTCTGCAGCTCTTGTGTCGCTAGCCCTCTTTGGTGCCTTTGTGAGCCGT
GCAGCTATTTCAACTGTTGATGTGTTGACTCCAAAAGTGTTTATTGGTTT
GATTGTTGGTGCTATGCTTCCTTACTGGTTCTCTGCCATGACAATGAAGA
GTGTGGGAAGTGCAGCTCTTAAAATGGTTGAGGAAGTGCGCAGGCAATTT
AACACCATCCCTGGTCTTATGGAAGGCACTGCCAAACCTGATTATGCTAC
CTGTGTTAAGATCTCCACCGATGCATCCATCAAAGAGATGATCCCACCTG
GTGCCCTTGTCATGCTTACACCCCTTATTGTTGGTATCTTTTTTGGTGTG
GAAACTCTCTCTGGGGTCCTTGCCGGTTCCCTTGTCTCAGGTGTACAGAT
TGCGATCTCTGCATCCAACACTGGTGGTGCCTGGGATAACGCCAAGAAGT
ACATTGAGGCTGGCGCTTCAGAGCACGCCAGAACTCTTGGTCCAAAAGGA
TCAGATCCACACAAGGCTGCGGTCA
back to top