CK935560

Overview
NameCK935560
Unique NameCK935560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1827 contig Csv1_Contig1827:102..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935560 vs. ExPASy Swiss-Prot
Match: IF1A_DICDI (Eukaryotic translation initiation factor 1A OS=Dictyostelium discoideum GN=eif1a PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.428e-35
Identity = 71/98 (72.45%), Postives = 82/98 (83.67%), Query Frame = 1
Query:  136 DDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNE 429
            +++KREL FKE+GQEYAQVLRMLGNGR EA C DG KRLCHI G++ KK WI  GDIIL+ LRDYQ+DKADVIL+Y  DEAR LK YGELPE+ R+NE
Sbjct:   19 NEQKRELQFKEEGQEYAQVLRMLGNGRLEASCFDGEKRLCHISGRLRKKEWINNGDIILIQLRDYQNDKADVILRYNVDEARNLKTYGELPETARINE 116          
BLAST of CK935560 vs. ExPASy Swiss-Prot
Match: IF1A_YEAST (Eukaryotic translation initiation factor 1A OS=Saccharomyces cerevisiae GN=TIF11 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.595e-34
Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1
Query:  130 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGLDKEDD 462
            ++D  KREL++KE+GQEYAQ+ +MLGNGR EA C DG KR+ HIRGK+ KKVW+  GDIILV LRD+QDD+ DV+ KY  DEAR LK  GELPE+ ++NE    G + ++D
Sbjct:   18 DSDGPKRELIYKEEGQEYAQITKMLGNGRVEASCFDGNKRMAHIRGKLRKKVWMGQGDIILVSLRDFQDDQCDVVHKYNLDEARTLKNQGELPENAKINETDNFGFESDED 128          
BLAST of CK935560 vs. ExPASy Swiss-Prot
Match: IF1A_SCHPO (Eukaryotic translation initiation factor 1A OS=Schizosaccharomyces pombe GN=tif11 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 6.001e-34
Identity = 70/111 (63.06%), Postives = 84/111 (75.68%), Query Frame = 1
Query:  130 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGLDKEDD 462
            E ++EKREL + E+GQ YAQV +MLGNGR EA C DG KRL HIRGK+ KKVWI  GDIIL+ LR++QD+K DVILKY  DEAR LK  GELPE+ ++NE    G + EDD
Sbjct:   18 ENENEKRELTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIRGKLRKKVWINQGDIILLSLREFQDEKGDVILKYTADEARTLKNQGELPETAKINETDTFGAEGEDD 128          
BLAST of CK935560 vs. ExPASy Swiss-Prot
Match: IF1A_NATPD (Translation initiation factor 1A OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=eif1a PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 38/95 (40.00%), Postives = 59/95 (62.11%), Query Frame = 1
Query:  133 ADDEKRELVFKEDGQE-YAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPES 414
            +D+E R+ +   +G E +A V  MLG  R +  C+DGT+R   I G+M K++WI   D++LV   D+QD+KADV+ +Y   EA  L+  G + +S
Sbjct:    2 SDNEGRKNLRMPEGDEVFAVVTNMLGANRVKVRCMDGTERTARIPGRMQKRIWIREDDVVLVEPWDWQDEKADVVWRYEKQEADQLREEGHITDS 96          
BLAST of CK935560 vs. ExPASy Swiss-Prot
Match: IF1A_METKA (Translation initiation factor 1A OS=Methanopyrus kandleri GN=eIF1A PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.839e-13
Identity = 39/104 (37.50%), Postives = 62/104 (59.62%), Query Frame = 1
Query:  136 DDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPES-TRLNEGIAGG 444
            D+  +++   ++G+ +  V +MLGN R +  C+DG  R+  I GKM K+VWI  GD++LV   ++Q ++ADV  +Y   +   LK  G+L E  T+L E I  G
Sbjct:    7 DETLKKIRLPKEGEIFGVVEKMLGNDRVQVRCVDGKTRVARIPGKMRKRVWIREGDVVLVKPWEFQPERADVTWRYTRVQVDWLKRKGKLDERVTKLLEEIIPG 110          
BLAST of CK935560 vs. ExPASy Swiss-Prot
Match: IF1A_HALMA (Translation initiation factor 1A OS=Haloarcula marismortui GN=eif1a PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.626e-13
Identity = 34/92 (36.96%), Postives = 55/92 (59.78%), Query Frame = 1
Query:  136 DDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE 411
            +D ++ L   E+ + +A V+ MLG  R +  C+DG +R   I GKM K++WI   D++LV   D+QD+KAD+  +Y   +A  L+  G + E
Sbjct:    4 NDSRKNLRMPEEDEVFAVVMDMLGANRVKVRCMDGVERTARIPGKMQKRIWIREDDVVLVEPWDWQDEKADITWRYEKQDADQLREEGHIQE 95          
BLAST of CK935560 vs. ExPASy Swiss-Prot
Match: IF1A_SULIY (Translation initiation factor 1A OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.219e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  148 RELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 387
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
BLAST of CK935560 vs. ExPASy Swiss-Prot
Match: IF1A_SULIN (Translation initiation factor 1A OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.219e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  148 RELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 387
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
BLAST of CK935560 vs. ExPASy Swiss-Prot
Match: IF1A_SULIM (Translation initiation factor 1A OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.219e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  148 RELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 387
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
BLAST of CK935560 vs. ExPASy Swiss-Prot
Match: IF1A_SULIL (Translation initiation factor 1A OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.219e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  148 RELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 387
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
The following BLAST results are available for this feature:
BLAST of CK935560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
IF1A_DICDI1.428e-3572.45Eukaryotic translation initiation factor 1A OS=Dic... [more]
IF1A_YEAST4.595e-3459.46Eukaryotic translation initiation factor 1A OS=Sac... [more]
IF1A_SCHPO6.001e-3463.06Eukaryotic translation initiation factor 1A OS=Sch... [more]
IF1A_NATPD2.621e-1340.00Translation initiation factor 1A OS=Natronomonas p... [more]
IF1A_METKA5.839e-1337.50Translation initiation factor 1A OS=Methanopyrus k... [more]
IF1A_HALMA7.626e-1336.96Translation initiation factor 1A OS=Haloarcula mar... [more]
IF1A_SULIY2.219e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]
IF1A_SULIN2.219e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]
IF1A_SULIM2.219e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]
IF1A_SULIL2.219e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_C09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935560 ID=CK935560; Name=CK935560; organism=Citrus sinensis; type=EST; length=742bp
GGGTGAGAAACAGATTGATTTCAATCTTGCTGCTTTTTAACTCTCCGACT
CCACCTCTCCCCCAAAGAATCAGAAACCATGCCGAAGAATAAGGGAAAGG
GAGGAAAGAACAGGAAGAGGGGAAAGAATGAAGCTGACGACGAGAAGCGT
GAGCTTGTCTTCAAGGAAGACGGACAGGAATATGCCCAAGTCCTTCGTAT
GCTCGGCAATGGTCGGTGTGAAGCTATGTGCATCGATGGAACCAAGCGTC
TTTGCCACATCCGTGGGAAGATGCACAAAAAGGTTTGGATTGCAGCTGGT
GATATAATACTTGTTGGCCTACGTGATTATCAGGATGACAAGGCTGATGT
CATCCTCAAGTATATGCCCGACGAGGCAAGGCTTCTGAAGGCTTATGGTG
AACTTCCAGAGAGTACCCGTCTCAATGAGGGCATTGCTGGTGGTCTTGAT
AAAGAGGATGATGGCGCTGATAATGATTACATCGAGTTTGAAGACGAAGA
TATTGATAAGATCTAGGCTCCGAGAATCGACTCTGTCTGGGGTTTATGTT
CAATATTTAGCAAAAATGGAGTATGCCAATGTATTGGTTACTTAAAAGCT
GAAAATATGTGTTTGCAGCTTATATATTTGGAATTTTTAATGGTGAGCCT
GTCATATTTCGTGTAACGCCTATTACTTGCTTATTAATTTTGTTTAGTTC
TGCACTTTTTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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