CK935563

Overview
NameCK935563
Unique NameCK935563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9377 contig Csv1_Contig9377:55..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935563 vs. ExPASy Swiss-Prot
Match: QCR1_BOVIN (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Bos taurus GN=UQCRC1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.665e-14
Identity = 39/118 (33.05%), Postives = 69/118 (58.47%), Query Frame = 1
Query:  325 KTNISTLPNGVKIASETSLSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNTSHLRIVREVEAIGGNVQASASTEQMGYSFDALKTYVPEMVELLIDCVTNPVFLDWEVNEQ 678
            +T +S L NG+++ASE S  P  ++ +++  GS YES  + G  + +E +AF+ T+N     + +EVE++G ++ A ++ E   Y   AL   +P+ VELL D V N    D ++ ++
Sbjct:   47 ETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKE 164          
BLAST of CK935563 vs. ExPASy Swiss-Prot
Match: MPPB_RAT (Mitochondrial-processing peptidase subunit beta OS=Rattus norvegicus GN=Pmpcb PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.481e-14
Identity = 40/118 (33.90%), Postives = 65/118 (55.08%), Query Frame = 1
Query:  325 KTNISTLPNGVKIASETSLSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNTSHLRIVREVEAIGGNVQASASTEQMGYSFDALKTYVPEMVELLIDCVTNPVFLDWEVNEQ 678
            +T ++ L NG+++ASE S     ++ L++  GS YE+  + GT H LE MAF+ T+  S L +  E+E +G ++ A  S EQ  Y   A    +P  VE+L D + N    + E+  +
Sbjct:   57 ETQVTCLENGLRVASENSGISTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERE 174          
BLAST of CK935563 vs. ExPASy Swiss-Prot
Match: MPPB_MOUSE (Mitochondrial-processing peptidase subunit beta OS=Mus musculus GN=Pmpcb PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.481e-14
Identity = 40/118 (33.90%), Postives = 65/118 (55.08%), Query Frame = 1
Query:  325 KTNISTLPNGVKIASETSLSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNTSHLRIVREVEAIGGNVQASASTEQMGYSFDALKTYVPEMVELLIDCVTNPVFLDWEVNEQ 678
            +T ++ L NG+++ASE S     ++ L++  GS YE+  + GT H LE MAF+ T+  S L +  E+E +G ++ A  S EQ  Y   A    +P  VE+L D + N    + E+  +
Sbjct:   57 ETQVTCLENGLRVASENSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSRDLPRAVEILADIIQNSTLGEAEIERE 174          
BLAST of CK935563 vs. ExPASy Swiss-Prot
Match: MPPB_DICDI (Mitochondrial-processing peptidase subunit beta OS=Dictyostelium discoideum GN=mppB PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.481e-14
Identity = 41/111 (36.94%), Postives = 64/111 (57.66%), Query Frame = 1
Query:  325 KTNISTLPNGVKIASETSLSPVASISLYVGCGSIYESPISFGTTHLLERMAFRST-RNTSHLRIVREVEAIGGNVQASASTEQMGYSFDALKTYVPEMVELLIDCVTNPVF 654
            +T I+TL NG+++A+E +   VAS+ ++V  GS+YE+  + G  H LE M F+ T +  +   I  E+E +GG++ A  S E   Y    LK  VP  V++L D + N  F
Sbjct:   34 ETKITTLSNGIRVATEQTYGEVASVGVWVDSGSVYETDKNNGVAHFLEHMIFKGTAKRPTPQSIETEIENMGGSLNAFTSREHSAYYMKVLKDNVPNAVDILSDILQNSKF 144          
BLAST of CK935563 vs. ExPASy Swiss-Prot
Match: QCR1_MOUSE (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Mus musculus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.546e-14
Identity = 39/118 (33.05%), Postives = 69/118 (58.47%), Query Frame = 1
Query:  325 KTNISTLPNGVKIASETSLSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNTSHLRIVREVEAIGGNVQASASTEQMGYSFDALKTYVPEMVELLIDCVTNPVFLDWEVNEQ 678
            +T +S L NG+++ASE S     ++ +++  GS YE+  + G  + LE +AF+ T+N     + +EVE+IG ++ A ++ E   Y   AL   +P++VELL D V N    D ++ ++
Sbjct:   47 ETQVSILDNGLRVASEQSSHATCTVGVWIDAGSRYETEKNNGAGYFLEHLAFKGTKNRPGNALEKEVESIGAHLNAYSTREHTAYLIKALSKDLPKVVELLADIVQNSSLEDSQIEKE 164          
BLAST of CK935563 vs. ExPASy Swiss-Prot
Match: MPPB_BOVIN (Mitochondrial-processing peptidase subunit beta OS=Bos taurus GN=PMPCB PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.546e-14
Identity = 40/118 (33.90%), Postives = 65/118 (55.08%), Query Frame = 1
Query:  325 KTNISTLPNGVKIASETSLSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNTSHLRIVREVEAIGGNVQASASTEQMGYSFDALKTYVPEMVELLIDCVTNPVFLDWEVNEQ 678
            +T ++ L NG+++ASE S     ++ L++  GS YE+  + GT H LE MAF+ T+  S L +  E+E +G ++ A  S EQ  Y   A    +P  VE+L D + N    + E+  +
Sbjct:   58 ETRVTCLENGLRVASEDSGLATCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERE 175          
BLAST of CK935563 vs. ExPASy Swiss-Prot
Match: MPPB_ARATH (Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.546e-14
Identity = 40/119 (33.61%), Postives = 71/119 (59.66%), Query Frame = 1
Query:  325 KTNISTLPNGVKIASETSLSP-VASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNTSHLRIVREVEAIGGNVQASASTEQMGYSFDALKTYVPEMVELLIDCVTNPVFLDWEVNEQ 678
            +T ++TLPNG+++A+E++LS   A++ +++  GS +ES  + GT H LE M F+ T   +   +  E+E IGG++ A  S EQ  Y    L + V + +++L D + N  F +  +N +
Sbjct:   96 ETRVTTLPNGLRVATESNLSAKTATVGVWIDAGSRFESDETNGTAHFLEHMIFKGTDRRTVRALEEEIEDIGGHLNAYTSREQTTYYAKVLDSNVNQALDVLADILQNSKFEEQRINRE 214          
BLAST of CK935563 vs. ExPASy Swiss-Prot
Match: QCR1_HUMAN (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Homo sapiens GN=UQCRC1 PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.727e-13
Identity = 38/118 (32.20%), Postives = 69/118 (58.47%), Query Frame = 1
Query:  325 KTNISTLPNGVKIASETSLSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNTSHLRIVREVEAIGGNVQASASTEQMGYSFDALKTYVPEMVELLIDCVTNPVFLDWEVNEQ 678
            +T +S L NG+++ASE S  P  ++ +++  GS +E+  + G  + LE +AF+ T+N     + +EVE++G ++ A ++ E   Y   AL   +P+ VELL D V N    D ++ ++
Sbjct:   47 ETQVSLLDNGLRVASEQSSQPTCTVGVWIDVGSRFETEKNNGAGYFLEHLAFKGTKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLGDIVQNCSLEDSQIEKE 164          
BLAST of CK935563 vs. ExPASy Swiss-Prot
Match: MPPB_PONAB (Mitochondrial-processing peptidase subunit beta OS=Pongo abelii GN=PMPCB PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.727e-13
Identity = 39/118 (33.05%), Postives = 65/118 (55.08%), Query Frame = 1
Query:  325 KTNISTLPNGVKIASETSLSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNTSHLRIVREVEAIGGNVQASASTEQMGYSFDALKTYVPEMVELLIDCVTNPVFLDWEVNEQ 678
            +T ++ L +G+++ASE S     ++ L++  GS YE+  + GT H LE MAF+ T+  S L +  E+E +G ++ A  S EQ  Y   A    +P  VE+L D + N    + E+  +
Sbjct:   57 ETRVTCLESGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERE 174          
BLAST of CK935563 vs. ExPASy Swiss-Prot
Match: MPPB_HUMAN (Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.727e-13
Identity = 39/118 (33.05%), Postives = 65/118 (55.08%), Query Frame = 1
Query:  325 KTNISTLPNGVKIASETSLSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNTSHLRIVREVEAIGGNVQASASTEQMGYSFDALKTYVPEMVELLIDCVTNPVFLDWEVNEQ 678
            +T ++ L +G+++ASE S     ++ L++  GS YE+  + GT H LE MAF+ T+  S L +  E+E +G ++ A  S EQ  Y   A    +P  VE+L D + N    + E+  +
Sbjct:   57 ETRVTCLESGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERE 174          
The following BLAST results are available for this feature:
BLAST of CK935563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
QCR1_BOVIN2.665e-1433.05Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
MPPB_RAT3.481e-1433.90Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_MOUSE3.481e-1433.90Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_DICDI3.481e-1436.94Mitochondrial-processing peptidase subunit beta OS... [more]
QCR1_MOUSE4.546e-1433.05Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
MPPB_BOVIN4.546e-1433.90Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_ARATH4.546e-1433.61Probable mitochondrial-processing peptidase subuni... [more]
QCR1_HUMAN1.727e-1332.20Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
MPPB_PONAB1.727e-1333.05Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_HUMAN1.727e-1333.05Mitochondrial-processing peptidase subunit beta OS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_C12 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935563 ID=CK935563; Name=CK935563; organism=Citrus sinensis; type=EST; length=682bp
GGGGGAGCCTCTTTCTCTCGATTAGCTGCCAGTCTTCAACACTTGTCCCG
TTCAAATTAGGGTTTTGGAGAATTGACTATCAAATCAATCAACATGTACA
GAAACGCAGCCTCTCGTCTTCGAGCCCTCAAGGGCCATGTGCGTTGTAGG
GTGCCTTCAGCCACAAGATTTGCAAGTTCCAGTGCCGTTGCTTCAACTTC
ATCCTCTTCGGGTGGTCTCTTTAGCTGGTTGACTGGGGAACGGTCCAGTT
CTTCACCTTCTCTGGACTTTCCACTTCCGGGTGTCTCTCTTCCACCTTCA
TTGCCTGATTATGTTGAACCTGGTAAAACCAACATTTCTACTCTACCAAA
TGGTGTCAAAATTGCCTCGGAAACATCATTGAGTCCTGTAGCCTCAATAT
CGTTATATGTTGGTTGTGGTTCAATTTATGAGTCACCAATCTCATTTGGG
ACAACACACTTGCTTGAGCGTATGGCTTTTAGAAGTACAAGAAATACGAG
TCACTTGCGTATTGTGCGAGAAGTGGAGGCAATTGGTGGCAATGTCCAAG
CCTCAGCTTCTACGGAGCAGATGGGTTACTCCTTTGATGCTTTGAAAACT
TATGTTCCTGAAATGGTAGAGCTTCTTATTGACTGTGTGACAAACCCTGT
TTTTCTGGATTGGGAGGTCAACGAACAGCTCA
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