CK935565

Overview
NameCK935565
Unique NameCK935565
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: KHDR2_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Homo sapiens GN=KHDRBS2 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.899e-24
Identity = 56/126 (44.44%), Postives = 85/126 (67.46%), Query Frame = 3
Query:  513 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNGT 884
            +K + RV IPV++YP FNFVG+LLGPRGNSLKR++  T  ++ I G+GS++D A+EE +R  G+  Y HL++ LH+L+E   P     +R+  A E ++  L P  + +D  +++QLRE   LNG+
Sbjct:   58 IKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGS 181          

HSP 2 Score: 27.335 bits (59), Expect = 2.899e-24
Identity = 10/19 (52.63%), Postives = 16/19 (84.21%), Query Frame = 2
Query:  341 LDQEKYLSELLAERHKLNP 397
            +++EKYL EL+AE+  L+P
Sbjct:    1 MEEEKYLPELMAEKDSLDP 19          
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: KHDR2_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Rattus norvegicus GN=Khdrbs2 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 6.389e-24
Identity = 56/126 (44.44%), Postives = 85/126 (67.46%), Query Frame = 3
Query:  513 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNGT 884
            +K + RV IPV++YP FNFVG+LLGPRGNSLKR++  T  ++ I G+GS++D A+EE +R  G+  Y HL++ LH+L+E   P     +R+  A E ++  L P  + +D  +++QLRE   LNG+
Sbjct:   58 IKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGS 181          

HSP 2 Score: 26.1794 bits (56), Expect = 6.389e-24
Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 2
Query:  341 LDQEKYLSELLAERHKLNP 397
            + +EKYL EL+AE+  L+P
Sbjct:    1 MGEEKYLPELMAEKDSLDP 19          
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: KHDR2_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Mus musculus GN=Khdrbs2 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.832e-23
Identity = 55/126 (43.65%), Postives = 84/126 (66.67%), Query Frame = 3
Query:  513 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNGT 884
            +K + RV IPV++YP FNFVG+LLGPRGNSLKR++  T  ++ I G+GS++D  +EE +R  G+  Y HL++ LH+L+E   P     +R+  A E ++  L P  + +D  +++QLRE   LNG+
Sbjct:   58 IKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKTKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGS 181          

HSP 2 Score: 26.1794 bits (56), Expect = 1.832e-23
Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 2
Query:  341 LDQEKYLSELLAERHKLNP 397
            + +EKYL EL+AE+  L+P
Sbjct:    1 MGEEKYLPELMAEKDSLDP 19          
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: KHDR2_DANRE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Danio rerio GN=khdrbs2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 4.037e-23
Identity = 54/126 (42.86%), Postives = 83/126 (65.87%), Query Frame = 3
Query:  513 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNGT 884
            +K + RV IPV++YP FNFVG+LLGPRGNS+KR++  T  ++ I G+GS++D  +EE +R  G+  Y HL+  LH+L+E   P     +R+  A E ++  L P  + +D  +++QLRE   LNG+
Sbjct:   58 IKLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKEEELRKSGEAKYAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGS 181          

HSP 2 Score: 26.1794 bits (56), Expect = 4.037e-23
Identity = 10/18 (55.56%), Postives = 15/18 (83.33%), Query Frame = 2
Query:  341 LDQEKYLSELLAERHKLN 394
            +DQ+KYL EL+AE+  L+
Sbjct:    1 MDQDKYLPELVAEKESLD 18          
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: KHDR3_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Homo sapiens GN=KHDRBS3 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.506e-22
Identity = 54/120 (45.00%), Postives = 80/120 (66.67%), Query Frame = 3
Query:  528 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNG 881
            +V IPV+++P FNFVG+LLGPRGNSLKR++  T  ++ I G+GS++D A+EE +R  G+  Y HLN+ LH+L+E   P     AR+  A E ++  L P  + +D  ++ QL+E   LNG
Sbjct:   59 KVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLNG 176          

HSP 2 Score: 28.1054 bits (61), Expect = 1.506e-22
Identity = 14/32 (43.75%), Postives = 21/32 (65.62%), Query Frame = 2
Query:  347 QEKYLSELLAERHKLNPFLPVLPNTYRLLNQD 442
            +EKYL EL+AE+  L+   P   +  RL+NQ+
Sbjct:    2 EEKYLPELMAEKDSLD---PSFTHALRLVNQE 30          
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: KHDR3_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Rattus norvegicus GN=Khdrbs3 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.314e-22
Identity = 54/120 (45.00%), Postives = 80/120 (66.67%), Query Frame = 3
Query:  528 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNG 881
            +V IPV+++P FNFVG+LLGPRGNSLKR++  T  ++ I G+GS++D A+EE +R  G+  Y HLN+ LH+L+E   P     AR+  A E ++  L P  + +D  ++ QL+E   LNG
Sbjct:   59 KVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEDIKKFLIP--DYNDEIRQAQLQELTYLNG 176          

HSP 2 Score: 26.5646 bits (57), Expect = 4.314e-22
Identity = 13/32 (40.62%), Postives = 21/32 (65.62%), Query Frame = 2
Query:  347 QEKYLSELLAERHKLNPFLPVLPNTYRLLNQD 442
            +EKYL EL+AE+  L+   P   +  RL+N++
Sbjct:    2 EEKYLPELMAEKDSLD---PSFTHALRLVNRE 30          
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: KHDR3_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Mus musculus GN=Khdrbs3 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.314e-22
Identity = 54/120 (45.00%), Postives = 80/120 (66.67%), Query Frame = 3
Query:  528 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNG 881
            +V IPV+++P FNFVG+LLGPRGNSLKR++  T  ++ I G+GS++D A+EE +R  G+  Y HLN+ LH+L+E   P     AR+  A E ++  L P  + +D  ++ QL+E   LNG
Sbjct:   59 KVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLNG 176          

HSP 2 Score: 26.5646 bits (57), Expect = 4.314e-22
Identity = 13/32 (40.62%), Postives = 21/32 (65.62%), Query Frame = 2
Query:  347 QEKYLSELLAERHKLNPFLPVLPNTYRLLNQD 442
            +EKYL EL+AE+  L+   P   +  RL+N++
Sbjct:    2 EEKYLPELMAEKDSLD---PSFTHALRLVNRE 30          
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: KHDR2_XENTR (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Xenopus tropicalis GN=khdrbs2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.314e-22
Identity = 53/126 (42.06%), Postives = 83/126 (65.87%), Query Frame = 3
Query:  513 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNGT 884
            +K + RV IPV++YP FNFVG+LLGPRGNSLKR++  T  ++ I G+GS++D  +EE +R   +  + HL++ LH+L+E   P     +R+  A E ++  L P  + +D  +++QLRE   LNG+
Sbjct:   58 IKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKIKEEELRKSDEAKHAHLSDELHVLLEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGS 181          

HSP 2 Score: 27.335 bits (59), Expect = 4.314e-22
Identity = 10/19 (52.63%), Postives = 16/19 (84.21%), Query Frame = 2
Query:  341 LDQEKYLSELLAERHKLNP 397
            +++EKYL EL+AE+  L+P
Sbjct:    1 MEEEKYLPELMAEKDSLDP 19          
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: KHDR1_CHICK (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Gallus gallus GN=KHDRBS1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.261e-18
Identity = 53/134 (39.55%), Postives = 79/134 (58.96%), Query Frame = 3
Query:  528 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNGT---LREEGSPMSG 914
            RV IPV++YP FNFVG++LGP+GN++KR++  T  ++ + G+GS++D A+EE +R  G P Y HLN  LH+ +E   P     A +  A E ++  L P  +  D   ++Q  E   LNG     R  G P+ G
Sbjct:  142 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNGVPEPTRGRGGPVRG 273          
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: KHDR1_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Homo sapiens GN=KHDRBS1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.038e-18
Identity = 53/134 (39.55%), Postives = 79/134 (58.96%), Query Frame = 3
Query:  528 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNGT---LREEGSPMSG 914
            RV IPV++YP FNFVG++LGP+GN++KR++  T  ++ + G+GS++D A+EE +R  G P Y HLN  LH+ +E   P     A +  A E ++  L P  +  D   ++Q  E   LNG     R  G P+ G
Sbjct:  159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNGVPEPSRGRGVPVRG 290          
The following BLAST results are available for this feature:
BLAST of CK935565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
KHDR2_HUMAN2.899e-2444.44KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_RAT6.389e-2444.44KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_MOUSE1.832e-2343.65KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_DANRE4.037e-2342.86KH domain-containing, RNA-binding, signal transduc... [more]
KHDR3_HUMAN1.506e-2245.00KH domain-containing, RNA-binding, signal transduc... [more]
KHDR3_RAT4.314e-2245.00KH domain-containing, RNA-binding, signal transduc... [more]
KHDR3_MOUSE4.314e-2245.00KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_XENTR4.314e-2242.06KH domain-containing, RNA-binding, signal transduc... [more]
KHDR1_CHICK2.261e-1839.55KH domain-containing, RNA-binding, signal transduc... [more]
KHDR1_HUMAN5.038e-1839.55KH domain-containing, RNA-binding, signal transduc... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_B10 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935565 ID=CK935565; Name=CK935565; organism=Citrus sinensis; type=EST; length=929bp
GGGGACGATAGGCAGCCACTAGTTAGATTAGCGAGTGTGTGTCTGGTCGG
GATCATCCCACCAGCTACACAAATCTGCAGACAGCCGAACGCCACCTTCG
TCATCATCAATCATCGCAATCTTCCGTCCGCCGTACGCTTCTCATCGTCG
ATCATACCGCTGAAGCCACCGTCTGGATCTGATAAAGTGACCCGACGGCG
ACGACCGTAGACACTAACAGCAGAAAACTAACTTAACGATGGCGTCATCA
GGTGGAGGGAGGTTCATGGCCTACTCGCTGTCACCTTCTGCTCCTCACTC
TCCTCACCTCCCCTCTCTCCGCTCCGCATCCTCCGCTATCCTCGATCAAG
AAAAATATCTCTCTGAGTTACTAGCTGAGCGTCATAAGCTTAATCCATTC
CTGCCTGTATTACCGAATACTTACCGGCTGTTGAACCAGGATTTCTGGTT
TAATGCAGTCATCATCAGCACAAAACTGGCTTAGCTCACAAGGTAGCTCA
TCGGGTCTTATTGTTAAGAGGACAATCAGAGTGGATATTCCAGTCGAAAA
ATATCCTAATTTCAACTTTGTCGGGCGCCTCCTTGGTCCTCGAGGCAACT
CGCTTAAGCGAGTCGAAGCTAGTACAGAATGCCGTGTTCTGATTAGGGGA
CGCGGCAGTATAAAGGATCCAGCAAGGGAAGAAATGATGAGAGGAAAACC
TGGGTATGAACATTTGAATGAGCCTCTCCATATCCTGGTTGAGGCAGAAT
TGCCAGTTGAGATAGTTGATGCTCGCCTAATGCAAGCACGTGAGATACTT
GAAGATTTGCTCAAGCCTGTGGATGAATCCCATGATTTCTACAAGAAACA
ACAACTGCGAGAGCNNNCACTGCTCAATGGTACACTTCGTGAAGAGGGTT
CTCCAATGTCTGGGTCAGTGTCCCCCTTT
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