CK935565
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: KHDR2_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Homo sapiens GN=KHDRBS2 PE=1 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.899e-24 Identity = 56/126 (44.44%), Postives = 85/126 (67.46%), Query Frame = 3 Query: 513 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNGT 884 +K + RV IPV++YP FNFVG+LLGPRGNSLKR++ T ++ I G+GS++D A+EE +R G+ Y HL++ LH+L+E P +R+ A E ++ L P + +D +++QLRE LNG+ Sbjct: 58 IKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGS 181 HSP 2 Score: 27.335 bits (59), Expect = 2.899e-24 Identity = 10/19 (52.63%), Postives = 16/19 (84.21%), Query Frame = 2 Query: 341 LDQEKYLSELLAERHKLNP 397 +++EKYL EL+AE+ L+P Sbjct: 1 MEEEKYLPELMAEKDSLDP 19
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: KHDR2_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Rattus norvegicus GN=Khdrbs2 PE=1 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 6.389e-24 Identity = 56/126 (44.44%), Postives = 85/126 (67.46%), Query Frame = 3 Query: 513 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNGT 884 +K + RV IPV++YP FNFVG+LLGPRGNSLKR++ T ++ I G+GS++D A+EE +R G+ Y HL++ LH+L+E P +R+ A E ++ L P + +D +++QLRE LNG+ Sbjct: 58 IKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGS 181 HSP 2 Score: 26.1794 bits (56), Expect = 6.389e-24 Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 2 Query: 341 LDQEKYLSELLAERHKLNP 397 + +EKYL EL+AE+ L+P Sbjct: 1 MGEEKYLPELMAEKDSLDP 19
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: KHDR2_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Mus musculus GN=Khdrbs2 PE=1 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.832e-23 Identity = 55/126 (43.65%), Postives = 84/126 (66.67%), Query Frame = 3 Query: 513 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNGT 884 +K + RV IPV++YP FNFVG+LLGPRGNSLKR++ T ++ I G+GS++D +EE +R G+ Y HL++ LH+L+E P +R+ A E ++ L P + +D +++QLRE LNG+ Sbjct: 58 IKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKTKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGS 181 HSP 2 Score: 26.1794 bits (56), Expect = 1.832e-23 Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 2 Query: 341 LDQEKYLSELLAERHKLNP 397 + +EKYL EL+AE+ L+P Sbjct: 1 MGEEKYLPELMAEKDSLDP 19
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: KHDR2_DANRE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Danio rerio GN=khdrbs2 PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 4.037e-23 Identity = 54/126 (42.86%), Postives = 83/126 (65.87%), Query Frame = 3 Query: 513 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNGT 884 +K + RV IPV++YP FNFVG+LLGPRGNS+KR++ T ++ I G+GS++D +EE +R G+ Y HL+ LH+L+E P +R+ A E ++ L P + +D +++QLRE LNG+ Sbjct: 58 IKLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKEEELRKSGEAKYAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGS 181 HSP 2 Score: 26.1794 bits (56), Expect = 4.037e-23 Identity = 10/18 (55.56%), Postives = 15/18 (83.33%), Query Frame = 2 Query: 341 LDQEKYLSELLAERHKLN 394 +DQ+KYL EL+AE+ L+ Sbjct: 1 MDQDKYLPELVAEKESLD 18
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: KHDR3_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Homo sapiens GN=KHDRBS3 PE=1 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.506e-22 Identity = 54/120 (45.00%), Postives = 80/120 (66.67%), Query Frame = 3 Query: 528 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNG 881 +V IPV+++P FNFVG+LLGPRGNSLKR++ T ++ I G+GS++D A+EE +R G+ Y HLN+ LH+L+E P AR+ A E ++ L P + +D ++ QL+E LNG Sbjct: 59 KVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLNG 176 HSP 2 Score: 28.1054 bits (61), Expect = 1.506e-22 Identity = 14/32 (43.75%), Postives = 21/32 (65.62%), Query Frame = 2 Query: 347 QEKYLSELLAERHKLNPFLPVLPNTYRLLNQD 442 +EKYL EL+AE+ L+ P + RL+NQ+ Sbjct: 2 EEKYLPELMAEKDSLD---PSFTHALRLVNQE 30
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: KHDR3_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Rattus norvegicus GN=Khdrbs3 PE=1 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 4.314e-22 Identity = 54/120 (45.00%), Postives = 80/120 (66.67%), Query Frame = 3 Query: 528 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNG 881 +V IPV+++P FNFVG+LLGPRGNSLKR++ T ++ I G+GS++D A+EE +R G+ Y HLN+ LH+L+E P AR+ A E ++ L P + +D ++ QL+E LNG Sbjct: 59 KVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEDIKKFLIP--DYNDEIRQAQLQELTYLNG 176 HSP 2 Score: 26.5646 bits (57), Expect = 4.314e-22 Identity = 13/32 (40.62%), Postives = 21/32 (65.62%), Query Frame = 2 Query: 347 QEKYLSELLAERHKLNPFLPVLPNTYRLLNQD 442 +EKYL EL+AE+ L+ P + RL+N++ Sbjct: 2 EEKYLPELMAEKDSLD---PSFTHALRLVNRE 30
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: KHDR3_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Mus musculus GN=Khdrbs3 PE=1 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 4.314e-22 Identity = 54/120 (45.00%), Postives = 80/120 (66.67%), Query Frame = 3 Query: 528 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNG 881 +V IPV+++P FNFVG+LLGPRGNSLKR++ T ++ I G+GS++D A+EE +R G+ Y HLN+ LH+L+E P AR+ A E ++ L P + +D ++ QL+E LNG Sbjct: 59 KVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLNG 176 HSP 2 Score: 26.5646 bits (57), Expect = 4.314e-22 Identity = 13/32 (40.62%), Postives = 21/32 (65.62%), Query Frame = 2 Query: 347 QEKYLSELLAERHKLNPFLPVLPNTYRLLNQD 442 +EKYL EL+AE+ L+ P + RL+N++ Sbjct: 2 EEKYLPELMAEKDSLD---PSFTHALRLVNRE 30
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: KHDR2_XENTR (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Xenopus tropicalis GN=khdrbs2 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.314e-22 Identity = 53/126 (42.06%), Postives = 83/126 (65.87%), Query Frame = 3 Query: 513 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNGT 884 +K + RV IPV++YP FNFVG+LLGPRGNSLKR++ T ++ I G+GS++D +EE +R + + HL++ LH+L+E P +R+ A E ++ L P + +D +++QLRE LNG+ Sbjct: 58 IKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKIKEEELRKSDEAKHAHLSDELHVLLEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGS 181 HSP 2 Score: 27.335 bits (59), Expect = 4.314e-22 Identity = 10/19 (52.63%), Postives = 16/19 (84.21%), Query Frame = 2 Query: 341 LDQEKYLSELLAERHKLNP 397 +++EKYL EL+AE+ L+P Sbjct: 1 MEEEKYLPELMAEKDSLDP 19
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: KHDR1_CHICK (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Gallus gallus GN=KHDRBS1 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 2.261e-18 Identity = 53/134 (39.55%), Postives = 79/134 (58.96%), Query Frame = 3 Query: 528 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNGT---LREEGSPMSG 914 RV IPV++YP FNFVG++LGP+GN++KR++ T ++ + G+GS++D A+EE +R G P Y HLN LH+ +E P A + A E ++ L P + D ++Q E LNG R G P+ G Sbjct: 142 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNGVPEPTRGRGGPVRG 273
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: KHDR1_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Homo sapiens GN=KHDRBS1 PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 5.038e-18 Identity = 53/134 (39.55%), Postives = 79/134 (58.96%), Query Frame = 3 Query: 528 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNGT---LREEGSPMSG 914 RV IPV++YP FNFVG++LGP+GN++KR++ T ++ + G+GS++D A+EE +R G P Y HLN LH+ +E P A + A E ++ L P + D ++Q E LNG R G P+ G Sbjct: 159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNGVPEPSRGRGVPVRG 290 The following BLAST results are available for this feature:
BLAST of CK935565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 47
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Sequences
The
following sequences are available for this feature:
EST sequence >CK935565 ID=CK935565; Name=CK935565; organism=Citrus sinensis; type=EST; length=929bpback to top |