CK935565

Overview
NameCK935565
Unique NameCK935565
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: BBP_ASHGO (Branchpoint-bridging protein OS=Ashbya gossypii GN=BBP PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.579e-18
Identity = 50/124 (40.32%), Postives = 78/124 (62.90%), Query Frame = 3
Query:  537 IPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKD-PAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNGTLREEGSP 905
            IP+  YP  NFVG LLGPRGN+LK+++  + C+++IRGRGS+K+  A  ++ +G     ++NEPLH ++ A+   +I          I++ +  P  E  + +K+ QLRE  +LNGTLRE+  P
Sbjct:  155 IPINDYPEINFVGLLLGPRGNTLKQLQQQSGCKIVIRGRGSVKEGKAATDLPKGA---MNMNEPLHCVISADTEEKIPLGINAGESIIIKAITFP--EGQNDFKRGQLRELAVLNGTLREDNRP 273          
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: KHDR1_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Rattus norvegicus GN=Khdrbs1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.466e-17
Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 3
Query:  528 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNG 881
            RV IPV++YP FNFVG++LGP+GN++KR++  T  ++ + G+GS++D A+EE +R  G P Y HLN  LH+ +E   P     A +  A E ++  L P  +  D   ++Q  E   LNG
Sbjct:  159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNG 276          
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: KHDR1_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Mus musculus GN=Khdrbs1 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.466e-17
Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 3
Query:  528 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNG 881
            RV IPV++YP FNFVG++LGP+GN++KR++  T  ++ + G+GS++D A+EE +R  G P Y HLN  LH+ +E   P     A +  A E ++  L P  +  D   ++Q  E   LNG
Sbjct:  159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNG 276          
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: BBP_DICDI (Branchpoint-bridging protein OS=Dictyostelium discoideum GN=sf1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.914e-17
Identity = 51/133 (38.35%), Postives = 83/133 (62.41%), Query Frame = 3
Query:  516 KRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHL--NEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNGTLREEGSPM 908
            K+T ++ IP++ +P +NF+G ++GPRGN+ KR+E  +  ++ IRG+GS +D        GKP       N+ LH+L+ A    + VD +L +A  ++ + L PV+E  + +K+QQLRE   +NGTLRE  + M
Sbjct:  178 KKTRKIYIPIKNHPEYNFIGLIIGPRGNTQKRMEKESGAKIAIRGKGSSRD--------GKPTKLQFQENDELHVLLTA----DTVD-QLDKAEVLVREFLIPVEEGKNEHKRQQLRELAEMNGTLRERPAYM 297          
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: BBP_CANAL (Branchpoint-bridging protein OS=Candida albicans GN=BBP PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.265e-17
Identity = 48/126 (38.10%), Postives = 80/126 (63.49%), Query Frame = 3
Query:  519 RTI-RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNGTLRE 893
            RT+ R+ +PV+ YP+ NFVG L+GPRGN+LK+++  +  R+ IRG+GS+K+    +          + + LH+L+ A+ P++I  A +    EI++ L+    +  +F K+ QL+E  +LNGTLRE
Sbjct:  147 RTVERLYVPVKDYPDINFVGFLIGPRGNTLKKLQEDSGARLQIRGKGSVKEGKSSDGFGSSQTGTDIQDDLHVLITADSPLKISKA-VKLVNEIIDKLIFS-PQGMNFMKRDQLKELAVLNGTLRE 270          
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: SF01_HUMAN (Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4)

HSP 1 Score: 88.1965 bits (217), Expect = 7.274e-17
Identity = 52/127 (40.94%), Postives = 78/127 (61.42%), Query Frame = 3
Query:  528 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKD----PAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNGTLREE 896
            +V IP ++YP  NFVG L+GPRGN+LK +E     +++IRG+GS+K+        +M+ G+      +EPLH LV A   +E V   + Q R IL+  ++  ++ +D  +K QLRE   LNGTLRE+
Sbjct:  139 KVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGE------DEPLHALVTAN-TMENVKKAVEQIRNILKQGIETPEDQNDL-RKMQLRELARLNGTLRED 257          
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: BBP_YEAST (Branchpoint-bridging protein OS=Saccharomyces cerevisiae GN=MSL5 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.274e-17
Identity = 47/123 (38.21%), Postives = 74/123 (60.16%), Query Frame = 3
Query:  537 IPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNGTLREEGSP 905
            IPV++YP+ NFVG LLGPRG +L++++  + C++ IRGRGS+K+      +   PG  +  +PLH L+ A+   +I     +    +++ +  P  E  +  K+ QLRE   LNGTLRE+  P
Sbjct:  154 IPVDQYPDVNFVGLLLGPRGRTLRKLQEDSNCKIAIRGRGSVKEGKNASDL--PPGAMNFEDPLHCLIIADSEDKIQKGIKVCQNIVIKAVTSP--EGQNDLKRGQLRELAELNGTLREDNRP 272          
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: SF01_MOUSE (Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=5)

HSP 1 Score: 87.4261 bits (215), Expect = 1.241e-16
Identity = 53/126 (42.06%), Postives = 77/126 (61.11%), Query Frame = 3
Query:  528 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHL---NEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNGTLREE 896
            +V IP ++YP  NFVG L+GPRGN+LK +E     +++IRG+GS+     EE   G+   + L   +EPLH LV A   +E V   + Q R IL+  ++  ++ +D  +K QLRE   LNGTLRE+
Sbjct:  139 KVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSV-----EEGKVGRKDGQMLPGEDEPLHALVTAN-TMENVKKAVEQIRNILKQGIETPEDQNDL-RKMQLRELARLNGTLRED 257          
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: BBP_CANGA (Branchpoint-bridging protein OS=Candida glabrata GN=BBP PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.764e-16
Identity = 47/123 (38.21%), Postives = 72/123 (58.54%), Query Frame = 3
Query:  537 IPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNGTLREEGSP 905
            IPV +YP  NFVG LLGPRG +L++++  + C++ IRGRGS+K+      +   PG    ++PLH L+ A+   +I +        +++ +  P  E  +  K+ QLRE   LNGTLRE+  P
Sbjct:  140 IPVSQYPQINFVGLLLGPRGKTLRKMQEDSGCKIAIRGRGSVKEGKTSSDL--PPGAMDFSDPLHCLIIADNEEKIENGIKACRNIVIKAVTSP--EGQNELKRGQLRELAELNGTLREDNRP 258          
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: BBP_ASPFU (Branchpoint-bridging protein OS=Aspergillus fumigatus GN=bbp PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.213e-15
Identity = 44/129 (34.11%), Postives = 79/129 (61.24%), Query Frame = 3
Query:  528 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLN---EPLHILVEAELPVEIVDARLMQAREILEDLLK---PVDESHDFYKKQQLREXXLLNGTLREE 896
            +V +PV  YP  NF+G L+GPRGN+LK++EA +  ++ IRG+GS+K+       +G+    H +   E LH L+ A+      + ++ +A++++ ++++    + E  +  K+ QLRE   LNGTLR++
Sbjct:  184 KVYVPVNDYPEINFIGLLIGPRGNTLKKMEAESGAKIAIRGKGSVKEG------KGRSDAAHASNQEEDLHCLIMAD-----TEEKVNKAKKLVHNVIETAASIPEGQNELKRNQLRELAALNGTLRDD 301          
The following BLAST results are available for this feature:
BLAST of CK935565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
BBP_ASHGO6.579e-1840.32Branchpoint-bridging protein OS=Ashbya gossypii GN... [more]
KHDR1_RAT1.466e-1740.83KH domain-containing, RNA-binding, signal transduc... [more]
KHDR1_MOUSE1.466e-1740.83KH domain-containing, RNA-binding, signal transduc... [more]
BBP_DICDI1.914e-1738.35Branchpoint-bridging protein OS=Dictyostelium disc... [more]
BBP_CANAL4.265e-1738.10Branchpoint-bridging protein OS=Candida albicans G... [more]
SF01_HUMAN7.274e-1740.94Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4[more]
BBP_YEAST7.274e-1738.21Branchpoint-bridging protein OS=Saccharomyces cere... [more]
SF01_MOUSE1.241e-1642.06Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=5[more]
BBP_CANGA2.764e-1638.21Branchpoint-bridging protein OS=Candida glabrata G... [more]
BBP_ASPFU5.213e-1534.11Branchpoint-bridging protein OS=Aspergillus fumiga... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_B10 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935565 ID=CK935565; Name=CK935565; organism=Citrus sinensis; type=EST; length=929bp
GGGGACGATAGGCAGCCACTAGTTAGATTAGCGAGTGTGTGTCTGGTCGG
GATCATCCCACCAGCTACACAAATCTGCAGACAGCCGAACGCCACCTTCG
TCATCATCAATCATCGCAATCTTCCGTCCGCCGTACGCTTCTCATCGTCG
ATCATACCGCTGAAGCCACCGTCTGGATCTGATAAAGTGACCCGACGGCG
ACGACCGTAGACACTAACAGCAGAAAACTAACTTAACGATGGCGTCATCA
GGTGGAGGGAGGTTCATGGCCTACTCGCTGTCACCTTCTGCTCCTCACTC
TCCTCACCTCCCCTCTCTCCGCTCCGCATCCTCCGCTATCCTCGATCAAG
AAAAATATCTCTCTGAGTTACTAGCTGAGCGTCATAAGCTTAATCCATTC
CTGCCTGTATTACCGAATACTTACCGGCTGTTGAACCAGGATTTCTGGTT
TAATGCAGTCATCATCAGCACAAAACTGGCTTAGCTCACAAGGTAGCTCA
TCGGGTCTTATTGTTAAGAGGACAATCAGAGTGGATATTCCAGTCGAAAA
ATATCCTAATTTCAACTTTGTCGGGCGCCTCCTTGGTCCTCGAGGCAACT
CGCTTAAGCGAGTCGAAGCTAGTACAGAATGCCGTGTTCTGATTAGGGGA
CGCGGCAGTATAAAGGATCCAGCAAGGGAAGAAATGATGAGAGGAAAACC
TGGGTATGAACATTTGAATGAGCCTCTCCATATCCTGGTTGAGGCAGAAT
TGCCAGTTGAGATAGTTGATGCTCGCCTAATGCAAGCACGTGAGATACTT
GAAGATTTGCTCAAGCCTGTGGATGAATCCCATGATTTCTACAAGAAACA
ACAACTGCGAGAGCNNNCACTGCTCAATGGTACACTTCGTGAAGAGGGTT
CTCCAATGTCTGGGTCAGTGTCCCCCTTT
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