CK935565
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: BBP_ASHGO (Branchpoint-bridging protein OS=Ashbya gossypii GN=BBP PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 6.579e-18 Identity = 50/124 (40.32%), Postives = 78/124 (62.90%), Query Frame = 3 Query: 537 IPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKD-PAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNGTLREEGSP 905 IP+ YP NFVG LLGPRGN+LK+++ + C+++IRGRGS+K+ A ++ +G ++NEPLH ++ A+ +I I++ + P E + +K+ QLRE +LNGTLRE+ P Sbjct: 155 IPINDYPEINFVGLLLGPRGNTLKQLQQQSGCKIVIRGRGSVKEGKAATDLPKGA---MNMNEPLHCVISADTEEKIPLGINAGESIIIKAITFP--EGQNDFKRGQLRELAVLNGTLREDNRP 273
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: KHDR1_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Rattus norvegicus GN=Khdrbs1 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.466e-17 Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 3 Query: 528 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNG 881 RV IPV++YP FNFVG++LGP+GN++KR++ T ++ + G+GS++D A+EE +R G P Y HLN LH+ +E P A + A E ++ L P + D ++Q E LNG Sbjct: 159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNG 276
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: KHDR1_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Mus musculus GN=Khdrbs1 PE=1 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 1.466e-17 Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 3 Query: 528 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNG 881 RV IPV++YP FNFVG++LGP+GN++KR++ T ++ + G+GS++D A+EE +R G P Y HLN LH+ +E P A + A E ++ L P + D ++Q E LNG Sbjct: 159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNG 276
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: BBP_DICDI (Branchpoint-bridging protein OS=Dictyostelium discoideum GN=sf1 PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.914e-17 Identity = 51/133 (38.35%), Postives = 83/133 (62.41%), Query Frame = 3 Query: 516 KRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHL--NEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNGTLREEGSPM 908 K+T ++ IP++ +P +NF+G ++GPRGN+ KR+E + ++ IRG+GS +D GKP N+ LH+L+ A + VD +L +A ++ + L PV+E + +K+QQLRE +NGTLRE + M Sbjct: 178 KKTRKIYIPIKNHPEYNFIGLIIGPRGNTQKRMEKESGAKIAIRGKGSSRD--------GKPTKLQFQENDELHVLLTA----DTVD-QLDKAEVLVREFLIPVEEGKNEHKRQQLRELAEMNGTLRERPAYM 297
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: BBP_CANAL (Branchpoint-bridging protein OS=Candida albicans GN=BBP PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 4.265e-17 Identity = 48/126 (38.10%), Postives = 80/126 (63.49%), Query Frame = 3 Query: 519 RTI-RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNGTLRE 893 RT+ R+ +PV+ YP+ NFVG L+GPRGN+LK+++ + R+ IRG+GS+K+ + + + LH+L+ A+ P++I A + EI++ L+ + +F K+ QL+E +LNGTLRE Sbjct: 147 RTVERLYVPVKDYPDINFVGFLIGPRGNTLKKLQEDSGARLQIRGKGSVKEGKSSDGFGSSQTGTDIQDDLHVLITADSPLKISKA-VKLVNEIIDKLIFS-PQGMNFMKRDQLKELAVLNGTLRE 270
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: SF01_HUMAN (Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4) HSP 1 Score: 88.1965 bits (217), Expect = 7.274e-17 Identity = 52/127 (40.94%), Postives = 78/127 (61.42%), Query Frame = 3 Query: 528 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKD----PAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNGTLREE 896 +V IP ++YP NFVG L+GPRGN+LK +E +++IRG+GS+K+ +M+ G+ +EPLH LV A +E V + Q R IL+ ++ ++ +D +K QLRE LNGTLRE+ Sbjct: 139 KVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGE------DEPLHALVTAN-TMENVKKAVEQIRNILKQGIETPEDQNDL-RKMQLRELARLNGTLRED 257
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: BBP_YEAST (Branchpoint-bridging protein OS=Saccharomyces cerevisiae GN=MSL5 PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 7.274e-17 Identity = 47/123 (38.21%), Postives = 74/123 (60.16%), Query Frame = 3 Query: 537 IPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNGTLREEGSP 905 IPV++YP+ NFVG LLGPRG +L++++ + C++ IRGRGS+K+ + PG + +PLH L+ A+ +I + +++ + P E + K+ QLRE LNGTLRE+ P Sbjct: 154 IPVDQYPDVNFVGLLLGPRGRTLRKLQEDSNCKIAIRGRGSVKEGKNASDL--PPGAMNFEDPLHCLIIADSEDKIQKGIKVCQNIVIKAVTSP--EGQNDLKRGQLRELAELNGTLREDNRP 272
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: SF01_MOUSE (Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=5) HSP 1 Score: 87.4261 bits (215), Expect = 1.241e-16 Identity = 53/126 (42.06%), Postives = 77/126 (61.11%), Query Frame = 3 Query: 528 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHL---NEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNGTLREE 896 +V IP ++YP NFVG L+GPRGN+LK +E +++IRG+GS+ EE G+ + L +EPLH LV A +E V + Q R IL+ ++ ++ +D +K QLRE LNGTLRE+ Sbjct: 139 KVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSV-----EEGKVGRKDGQMLPGEDEPLHALVTAN-TMENVKKAVEQIRNILKQGIETPEDQNDL-RKMQLRELARLNGTLRED 257
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: BBP_CANGA (Branchpoint-bridging protein OS=Candida glabrata GN=BBP PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.764e-16 Identity = 47/123 (38.21%), Postives = 72/123 (58.54%), Query Frame = 3 Query: 537 IPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLREXXLLNGTLREEGSP 905 IPV +YP NFVG LLGPRG +L++++ + C++ IRGRGS+K+ + PG ++PLH L+ A+ +I + +++ + P E + K+ QLRE LNGTLRE+ P Sbjct: 140 IPVSQYPQINFVGLLLGPRGKTLRKMQEDSGCKIAIRGRGSVKEGKTSSDL--PPGAMDFSDPLHCLIIADNEEKIENGIKACRNIVIKAVTSP--EGQNELKRGQLRELAELNGTLREDNRP 258
BLAST of CK935565 vs. ExPASy Swiss-Prot
Match: BBP_ASPFU (Branchpoint-bridging protein OS=Aspergillus fumigatus GN=bbp PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 5.213e-15 Identity = 44/129 (34.11%), Postives = 79/129 (61.24%), Query Frame = 3 Query: 528 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLN---EPLHILVEAELPVEIVDARLMQAREILEDLLK---PVDESHDFYKKQQLREXXLLNGTLREE 896 +V +PV YP NF+G L+GPRGN+LK++EA + ++ IRG+GS+K+ +G+ H + E LH L+ A+ + ++ +A++++ ++++ + E + K+ QLRE LNGTLR++ Sbjct: 184 KVYVPVNDYPEINFIGLLIGPRGNTLKKMEAESGAKIAIRGKGSVKEG------KGRSDAAHASNQEEDLHCLIMAD-----TEEKVNKAKKLVHNVIETAASIPEGQNELKRNQLRELAALNGTLRDD 301 The following BLAST results are available for this feature:
BLAST of CK935565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 47
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Sequences
The
following sequences are available for this feature:
EST sequence >CK935565 ID=CK935565; Name=CK935565; organism=Citrus sinensis; type=EST; length=929bpback to top |