CK935580

Overview
NameCK935580
Unique NameCK935580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935580 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.437e-18
Identity = 49/185 (26.49%), Postives = 85/185 (45.95%), Query Frame = 3
Query:  195 QKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFWTVLYIGFVAAHTLPVLYEKHEDEVDSXXXXXXXXXXXXYKKLDSGFL 749
            ++ VH  +  G  AD+++W+N++    +L   T +W LFE   Y F   V    +L ++  F W   + LFNR   ++P   +  E    +   +   +N  L + ++I  G   KQ             +G+  NF T+LY+G V +  +P LYE+++D +D             Y+K+D   L
Sbjct:    2 EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKIDERLL 186          
BLAST of CK935580 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.075e-17
Identity = 46/168 (27.38%), Postives = 80/168 (47.62%), Query Frame = 3
Query:  177 NRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFWTVLYIGFVAAHTLPVLYEKHEDEV 680
            ++LF R + +H +LGGG  ADV+LWR K +S  ++    A W++FE   Y   T++   L+L +   F W   + + NR    +P F +   +       +  +VN+ L +  DI+     +              IGS  +F T+ +   +   T+P  YE++ED +
Sbjct:    6 DKLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYI 173          
BLAST of CK935580 vs. ExPASy Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.037e-17
Identity = 47/160 (29.38%), Postives = 77/160 (48.12%), Query Frame = 3
Query:  204 VHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFWTVLYIGFVAAHTLPVLYEKHEDEVD 683
            VH  LG G  AD+LLWRN+  +  +L+ +T  W LFE   Y+ L+ V   L+L +   F W   + + NR    VP   +P E        +   +N  L +  DI+      +             +G+  N  T++YIG + + + P++YEK++D +D
Sbjct:   13 VHQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHID 172          
BLAST of CK935580 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 8.718e-16
Identity = 50/165 (30.30%), Postives = 83/165 (50.30%), Query Frame = 3
Query:  192 RQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFW--VNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFWTVLYIGFVAAHTLPVLYEKHEDEV 680
            R++ ++H LGGG+ AD++ W+NKK S ++L   T IW LFE + Y F+T +C  L+L +     W  +  S L    P  +        +  +    +   +N  +  L DIS G   +              +G+  +  T+LYI FV   T+P+LYE++E+E+
Sbjct:   18 RRRSLYHNLGGGRFADIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIFIFLIWSYIGSSQLIQSKPPSINDL----RISESNWRFLFNKINWFIIKLYDISSGKDFRLLFLAVVSLWILSVVGNYFSSLTLLYIVFVGLETIPMLYEQYEEEL 178          
BLAST of CK935580 vs. ExPASy Swiss-Prot
Match: RTNLO_ARATH (Reticulon-like protein B15 OS=Arabidopsis thaliana GN=RTNLB15 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.465e-11
Identity = 45/161 (27.95%), Postives = 75/161 (46.58%), Query Frame = 3
Query:  204 VHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFWTVLYIGFVAAHTLPVLYEKHEDEVDS 686
            V  +LG G  AD+ LW++K  S   L+ AT  W L E++    + ++C  L+L ML  F W     +F       P  +  P+   +    + + +   L +L +I+ G   K              IGS  +  T+LYI  V + T+PV+Y + ++ +DS
Sbjct:    4 VDQILGDGAVADLCLWKDKINSGITLVMATLFWFLLEFMEARLVPLLCSILLLLMLILFLWAKFGEVFFTRRPPTPEELNQPD---SPLKALFSMMEGHLLMLYEIAYGKDNKTFLKTILYVAIIYNIGSYISLLTILYICLVCSMTIPVVYMQFQELIDS 161          
The following BLAST results are available for this feature:
BLAST of CK935580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RTNLJ_ARATH1.437e-1826.49Reticulon-like protein B10 OS=Arabidopsis thaliana... [more]
RTNLL_ARATH2.075e-1727.38Reticulon-like protein B12 OS=Arabidopsis thaliana... [more]
RTNLK_ARATH6.037e-1729.38Reticulon-like protein B11 OS=Arabidopsis thaliana... [more]
RTNLN_ARATH8.718e-1630.30Reticulon-like protein B14 OS=Arabidopsis thaliana... [more]
RTNLO_ARATH6.465e-1127.95Reticulon-like protein B15 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_A01 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935580 ID=CK935580; Name=CK935580; organism=Citrus sinensis; type=EST; length=823bp
GGGGAACAGACCCCATTTTTTTCCTTTTTTCTTGAAAGATTGGAAGAATG
CCAGAGAAAATAACAGCAGAGAACATTTTGGACAACCTTGTGGAAACCAT
TTCAGATAAGGTTCAAAAGCAGAAAGCTGTATCATTTTTTGAGGAAGAGA
CATCAAGCTCAGTCACTGCTCGTTTCAATCGGCTGTTCGGACGCCAGAAA
CCTGTCCACCATCTTTTGGGCGGTGGAAAATCTGCTGATGTTTTGTTATG
GAGGAACAAGAAGATATCAGCCAGTGTATTAATGGGTGCAACAGCAATTT
GGGTGCTCTTTGAATGGCTTAACTACCATTTTCTGACCATTGTATGCTTT
GCTTTGGTCCTCGGCATGCTTGCTCAATTTTTTTGGGTAAACATTTCGGG
CTTATTTAACAGATCACCATCAAAAGTTCCCCGCTTTGTTCTGCCTCCAG
AGGTATTTGCTAACATTGGCACGACAGTTTGTGCTAATGTTAACGAAGCT
CTGGGGCTACTTCAGGACATTTCATGTGGAGGAAAACTGAAACAACTTCT
TGTGGCTGTAGCAAGCTTGTGGGCTGCTGCTGTGATAGGGAGCTGTTGTA
ACTTTTGGACCGTTCTATATATTGGTTTTGTTGCTGCCCATACATTGCCA
GTCCTGTATGAGAAGCATGAAGATGAAGTTGACAGCTTTCTGAACAATGT
CTTCCAGCAGCTCCAGAATCAGTACAAGAAGCTTGATTCAGGTTTCCTCA
GCAAAATCCCCAAGGGCAAGTTCAAAGGGAAGAAAAGCGAATAGATCGAT
TGATCANNNATTAGATTTTACAT
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