CK935588

Overview
NameCK935588
Unique NameCK935588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935588 vs. ExPASy Swiss-Prot
Match: RLK_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RLK OS=Arabidopsis thaliana GN=RLK PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.568e-12
Identity = 65/205 (31.71%), Postives = 92/205 (44.88%), Query Frame = 3
Query:  210 SEGDALYALRRSLS-DPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRL-VPELGKLEHLQYLELYKNNIQGTIP--VELGNLKSLI----------------------SLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNNFENNPRLEGPEL 746
            S+ +A+   + SL    +N L SW+     PCTW  + CN  + V RL + N  LSG + +  L  L  L+ L    N  +G  P   +L  LKSL                        + L  N  +G+IP S+AKL  L+ LRL+ N+ TG+IP        L ++++S+N L G IP S          FE N  L G  L
Sbjct:   33 SDSEAILKFKESLVVGQENALASWNAKSP-PCTWSGVLCNGGS-VWRLQMENLELSGSIDIEALSGLTSLRTLSFMNNKFEGPFPDFKKLAALKSLYLSNNQFGGDIPGDAFEGMGWLKKVHLAQNKFTGQIPSSVAKLPKLLELRLDGNQFTGEIPE---FEHQLHLLNLSNNALTGPIPES--LSMTDPKVFEGNKGLYGKPL 230          
BLAST of CK935588 vs. ExPASy Swiss-Prot
Match: Y5169_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g16900 OS=Arabidopsis thaliana GN=At5g16900 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.119e-11
Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = 3
Query:  279 DPTLVNPCTWFHITCNQDN-----RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 557
            DP L     W  + C+  N     R+  LDL +  L+G++VP++  L  LQ L+L  N + G +P  L N+KSL+ ++L NNN+ G IP +L   K+L
Sbjct:  391 DPCLPQQFLWTGLNCSYMNMSTSPRIISLDLSSHKLTGKIVPDIQNLTQLQKLDLSNNKLTGGVPEFLANMKSLLFINLSNNNLVGSIPQALLDRKNL 488          
BLAST of CK935588 vs. ExPASy Swiss-Prot
Match: SRF7_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsis thaliana GN=SRF7 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.119e-11
Identity = 50/160 (31.25%), Postives = 87/160 (54.37%), Query Frame = 3
Query:  207 NSEGDALYALRRSLSDPDNVLQSWDPTLVNPC--TWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 680
            +S+  AL  +  S++ P  + Q W  +  +PC   W  ITC+  +RVT++ L +  LSG L   L KL  +   ++  NN+ G +P +L    +L  L+L NN  +G    S++ +  L +L L  N+L  Q+  +   ++SL ++D+SSN   G++P +
Sbjct:   29 SSDTSALNIMFSSMNSPGQLSQ-WTASGGDPCGQNWKGITCS-GSRVTQIKLPSLGLSGSLGFMLDKLTSVTEFDMSNNNLGGDLPYQLP--PNLERLNLANNQFTGSAQYSISMMAPLKYLNLAHNQLK-QLAIDFTKLTSLSILDLSSNAFIGSLPNT 183          
BLAST of CK935588 vs. ExPASy Swiss-Prot
Match: Y5182_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51820 OS=Arabidopsis thaliana GN=At1g51820 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.461e-11
Identity = 37/102 (36.27%), Postives = 57/102 (55.88%), Query Frame = 3
Query:  273 SW--DPTLVNPCTWFHITCNQDNR-----VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 557
            SW  DP +     W  + C   +      +T LDL +S L+G +   +  L HLQ L+L  NN+ G +P  L ++KSL+ ++L  NN+SG +PPSL + K +
Sbjct:  375 SWQGDPCVPKQLLWDGLNCKNSDISTPPIITSLDLSSSGLTGIITQAIKNLTHLQILDLSDNNLTGEVPEFLADIKSLLVINLSGNNLSGSVPPSLLQKKGM 476          
BLAST of CK935588 vs. ExPASy Swiss-Prot
Match: PII2_ARATH (Piriformospora indica-insensitive protein 2 OS=Arabidopsis thaliana GN=PII-2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.461e-11
Identity = 42/121 (34.71%), Postives = 66/121 (54.55%), Query Frame = 3
Query:  321 CNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSN-----DLCGT 668
            CN   R+ RL    ++ +G +      L+ L  L+L +N+  GT+P   G+L SL+ LDL NN + G +P  L  LK+L  L L +NR +G + + +  I SL  + +S+N     D+ GT
Sbjct:  188 CNL-KRLKRLVFAGNSFAGMIPNCFKGLKELLILDLSRNSFSGTLPTSFGDLVSLLKLDLSNNLLEGNLPQELGFLKNLTLLDLRNNRFSGGLSKNIENIQSLTELVLSNNPMGEEDMVGT 307          
BLAST of CK935588 vs. ExPASy Swiss-Prot
Match: Y1061_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At1g50610 OS=Arabidopsis thaliana GN=At1g50610 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.493e-11
Identity = 61/189 (32.28%), Postives = 87/189 (46.03%), Query Frame = 3
Query:  207 NSEGDALYALRRSLSDPDNVLQSWDPTLVNPC-----TWFHITCNQDNRVTRLDLGNSNLSGRL-VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP-------------------------SLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 680
            +S+ D L   + +L++     +SWDP L +PC      WF + C+  N V  L L    L+G+L +  L  +++L+ +    NN  G +P ++    SL SL L NN  SG+IP                          SLA L  L+ LRLN N+  GQIP        LK+    +NDL G IP S
Sbjct:   45 DSDADCLLRFKDTLANGSE-FRSWDP-LSSPCQGNTANWFGVLCS--NYVWGLQLEGMGLTGKLNLDPLVPMKNLRTISFMNNNFNGPMP-QVKRFTSLKSLYLSNNRFSGEIPADAFLGMPLLKKILLANNAFRGTIPSSLASLPMLLELRLNGNQFQGQIPS--FQQKDLKLASFENNDLDGPIPES 226          
BLAST of CK935588 vs. ExPASy Swiss-Prot
Match: Y2267_ARATH (Probable inactive receptor kinase At2g26730 OS=Arabidopsis thaliana GN=At2g26730 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.256e-11
Identity = 46/139 (33.09%), Postives = 69/139 (49.64%), Query Frame = 3
Query:  348 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNNFENNPRLEGPELLGLASY 764
            L L ++ LSG++  +   L HL+ L L  N   G  P     L +LI LD+ +NN +G IP S+  L  L  L L +N  +G +P   +G+      +VS+N+L G+IP+S         +F  N  L G  L    S+
Sbjct:   96 LSLRSNRLSGQIPSDFSNLTHLRSLYLQHNEFSGEFPTSFTQLNNLIRLDISSNNFTGSIPFSVNNLTHLTGLFLGNNGFSGNLPSISLGLVDF---NVSNNNLNGSIPSS--LSRFSAESFTGNVDLCGGPLKPCKSF 229          
BLAST of CK935588 vs. ExPASy Swiss-Prot
Match: Y1756_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07560 OS=Arabidopsis thaliana GN=At1g07560 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.256e-11
Identity = 40/111 (36.04%), Postives = 62/111 (55.86%), Query Frame = 3
Query:  273 SW--DPTLVNPCTWFHITCNQDN-----RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLA-KLKSLVFLRLNDN 581
            SW  DP +     W  +TC   N     R+  LDL +S L+G +VPE+  L  L+ L+   NN+ G +P  L  +KSL+ ++L  NN+SG +P +L  K+K+ + L +  N
Sbjct:  385 SWQGDPCVPQQLLWDGLTCEYTNMSTPPRIHSLDLSSSELTGIIVPEIQNLTELKKLDFSNNNLTGGVPEFLAKMKSLLVINLSGNNLSGSVPQALLNKVKNGLKLNIQGN 495          
BLAST of CK935588 vs. ExPASy Swiss-Prot
Match: TMKL1_ARATH (Putative kinase-like protein TMKL1 OS=Arabidopsis thaliana GN=TMKL1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.256e-11
Identity = 41/113 (36.28%), Postives = 66/113 (58.41%), Query Frame = 3
Query:  348 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKL-KSLVFLRLNDNRLTGQIPRELVGIS---SLKVVDVSSNDLCGTIP 674
            L L ++NL+G L  E+G+   LQ + L  N++ G+IP+ELG   SL  +DL  N ++G +PPS+  L   LV  +++ N L+G +P   +  S   +L+V+D+  N   G  P
Sbjct:  104 LQLPSANLTGSLPREIGEFSMLQSVFLNINSLSGSIPLELGYTSSLSDVDLSGNALAGVLPPSIWNLCDKLVSFKIHGNNLSGVLPEPALPNSTCGNLQVLDLGGNKFSGEFP 216          
BLAST of CK935588 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.252e-11
Identity = 51/160 (31.87%), Postives = 78/160 (48.75%), Query Frame = 3
Query:  210 SEGDALYALRRSLSDPDNVLQSWDPTLVNPC--TWFHITCNQDNRVTRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 680
            S+  AL  L   +  P  + Q W     +PC   W  +TC+  +RVT++ L    LSG L    L KL  L  L+L  NN+ G +P +     +L  L+L NN  +G    SL+++  L +L L  N+  GQI  +   + SL  +D S N    ++P +
Sbjct:   30 SDTSALNTLFSGMHSPAQLTQ-WTAAAGDPCGQNWRGVTCS-GSRVTQIKLSGLELSGTLGGYMLDKLTSLTELDLSSNNLGGDLPYQFP--PNLQRLNLANNQFTGAASYSLSQITPLKYLNLGHNQFKGQIAIDFSKLDSLTTLDFSFNSFTNSLPAT 185          
The following BLAST results are available for this feature:
BLAST of CK935588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
RLK_ARATH8.568e-1231.71Probable LRR receptor-like serine/threonine-protei... [more]
Y5169_ARATH1.119e-1137.76Probable LRR receptor-like serine/threonine-protei... [more]
SRF7_ARATH1.119e-1131.25Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsi... [more]
Y5182_ARATH1.461e-1136.27Probable LRR receptor-like serine/threonine-protei... [more]
PII2_ARATH1.461e-1134.71Piriformospora indica-insensitive protein 2 OS=Ara... [more]
Y1061_ARATH2.493e-1132.28Probably inactive leucine-rich repeat receptor-lik... [more]
Y2267_ARATH3.256e-1133.09Probable inactive receptor kinase At2g26730 OS=Ara... [more]
Y1756_ARATH3.256e-1136.04Probable LRR receptor-like serine/threonine-protei... [more]
TMKL1_ARATH3.256e-1136.28Putative kinase-like protein TMKL1 OS=Arabidopsis ... [more]
SRF6_ARATH4.252e-1131.88Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_A09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935588 ID=CK935588; Name=CK935588; organism=Citrus sinensis; type=EST; length=884bp
GGGGGGTGACTCTCTGATATTCCCAAAGCCGATCCTCTTTCTCTTTGACA
AACACAAACCCTAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCATGGCGGC
GGCGGCGGCGGCGGCAGCGCAGTGGTTGAGTGCGTGTATAACGTTCAGCG
TAAGCCTAATAATAATAATAATAGGGAGCAGCAGCTTGGTGGCGGTGGTG
AGTGGAAACTCGGAGGGGGACGCGCTGTACGCGCTCAGGAGAAGCCTATC
AGATCCCGATAACGTGCTTCAGAGCTGGGATCCAACTCTCGTCAATCCCT
GCACTTGGTTTCACATAACCTGTAATCAGGACAACCGCGTTACCCGACTG
GATTTGGGTAATTCAAATCTATCCGGCCGTCTCGTCCCTGAACTGGGCAA
GCTCGAGCATTTGCAATACCTGGAACTTTACAAAAACAACATCCAAGGAA
CTATCCCTGTCGAGCTCGGTAACTTGAAGAGCCTCATCAGCTTGGACTTG
TATAATAACAACATCTCGGGGAAAATCCCTCCTTCCTTGGCTAAATTGAA
ATCTCTTGTTTTTTTGCGGCTTAACGATAATCGGCTAACTGGACAAATTC
CCAGGGAACTTGTTGGAATTTCAAGTCTCAAAGTTGTGGATGTTTCAAGC
AATGATCTGTGTGGAACAATTCCTACAAGCGGACCATTTGAACACATCCC
ACTCAACAACTTTGAGAATAACCCTCGATTAGAAGGTCCAGAGTTGCTGG
GACTTGCAAGTTATGACACAAACTGCTCATAAACGATTGATTGTTGCTTC
AAGCTCTACTCAGGTTTCGAATAGATGTGTCCGCGAAGATTGAAAGCGTC
TTTACCTAANAAGCATAGTGTTATGGGTGAAATG
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