CK935588 | Citrus Genome Database

Overview


Name	CK935588
Unique Name	CK935588
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	884

Libraries


Library Name	Type
Developing fruit 24 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CK935588_ssr63	microsatellite	CK935588_ssr63:63..90.	BLAST: Citrus ESTs to Prunus persica proteins V1
CK935588_ssr95	microsatellite	CK935588_ssr95:95..115.	BLAST: Citrus ESTs to Prunus persica proteins V1
CK935588_ssr157	microsatellite	CK935588_ssr157:157..171.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1830	contig	Csv1_Contig1830:1..886.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK935588 vs. ExPASy Swiss-Prot
Match: PGIP1_ORYSJ (Polygalacturonase inhibitor 1 OS=Oryza sativa subsp. japonica GN=FOR1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.668e-15
Identity = 61/202 (30.20%), Postives = 95/202 (47.03%), Query Frame = 3

Query:  210 SEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSN--------------------------LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNNFENNPRLEG 737
            S+  AL  +++SL +P   L +W     + C W H+ C++  RV  + +  +N                          LSG +   L  L +LQ+L +   N+ G IP  L  ++SL S+DL +N+++G IP S + L +L  L L  N+LTG IP  LV     + + +S N L G IP     + I   +  +N RL G
Sbjct:   30 SDKQALMRVKQSLGNPAT-LSTWSLASADCCEWDHVRCDEAGRVNNVFIDGANDVRGQIPSAVAGLTALMSLSLFRLPGLSGPIPACLTALSNLQFLTISHTNVSGVIPDSLARIRSLDSVDLSHNSLTGPIPNSFSDLPNLRSLDLRSNKLTGCIPAGLVQ-GQFRSLILSYNQLTGPIPRDDAQDEINTVDLSHN-RLTG 228

[Close]

BLAST of CK935588 vs. ExPASy Swiss-Prot
Match: DR100_ARATH (DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.668e-15
Identity = 54/160 (33.75%), Postives = 81/160 (50.62%), Query Frame = 3

Query:  339 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSL------------------------VFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNNFENNPRLEGPEL 746
            ++R+ LG + L+G +   +  +E L  L+L KN+I+G IP  +GN+K L  L+L  N+++G IP SL     L                        V L L+ N L+G+IP  L     +  +D+S N LCG IPT  PF+H+   +F +N  L G  L
Sbjct:  209 LSRVLLGRNELTGSIPESISGMERLADLDLSKNHIEGPIPEWMGNMKVLSLLNLDCNSLTGPIPGSLLSNSGLDVANLSRNALEGTIPDVFGSKTYLVSLDLSHNSLSGRIPDSLSSAKFVGHLDISHNKLCGRIPTGFPFDHLEATSFSDNQCLCGGPL 368

HSP 2 Score: 79.337 bits (194), Expect = 3.146e-14
Identity = 50/132 (37.88%), Postives = 69/132 (52.27%), Query Frame = 3

Query:  348 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPT-SGPFEHIPLNNFENNPRLEGP 740
            LDL  + ++G +  E+GKL  L  L L +N + G IP  L +L  L  L+L  N I+G IP     LK L  + L  N LTG IP  + G+  L  +D+S N + G IP   G  + + L N + N  L GP
Sbjct:  140 LDLAGNKITGEIPAEIGKLSKLAVLNLAENQMSGEIPASLTSLIELKHLELTENGITGVIPADFGSLKMLSRVLLGRNELTGSIPESISGMERLADLDLSKNHIEGPIPEWMGNMKVLSLLNLDCN-SLTGP 270

HSP 3 Score: 78.1814 bits (191), Expect = 7.009e-14
Identity = 66/233 (28.33%), Postives = 100/233 (42.92%), Query Frame = 3

Query:  222 ALYALRRSLSDPD-NVLQSWDPTLVNPCTWFHITCNQDN-RVTRLDLGNSN--------------------------------------LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNNFENNPRLEGP--------ELLGLASYDTN 773
            AL A + SLS+P+  +  +W         W+ I+C+ D+ RVT + L   +                                      ++G + P +  L  L+ L+L  N I G IP E+G L  L  L+L  N +SG+IP SL  L  L  L L +N +TG IP +   +  L  V +  N+L G+IP S    E +   +   N  +EGP        ++L L + D N
Sbjct:   34 ALNAFKSSLSEPNLGIFNTWSENTDCCKEWYGISCDPDSGRVTDISLRGESEDAIFQKAGRSGYMSGSIDPAVCDLTALTSLVLADWKGITGEIPPCITSLASLRILDLAGNKITGEIPAEIGKLSKLAVLNLAENQMSGEIPASLTSLIELKHLELTENGITGVIPADFGSLKMLSRVLLGRNELTGSIPESISGMERLADLDLSKN-HIEGPIPEWMGNMKVLSLLNLDCN 265

HSP 4 Score: 73.9442 bits (180), Expect = 1.322e-12
Identity = 41/109 (37.61%), Postives = 62/109 (56.88%), Query Frame = 3

Query:  348 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 674
            L+L  + ++G +  + G L+ L  + L +N + G+IP  +  ++ L  LDL  N+I G IP  +  +K L  L L+ N LTG IP  L+  S L V ++S N L GTIP
Sbjct:  188 LELTENGITGVIPADFGSLKMLSRVLLGRNELTGSIPESISGMERLADLDLSKNHIEGPIPEWMGNMKVLSLLNLDCNSLTGPIPGSLLSNSGLDVANLSRNALEGTIP 296

[Close]

BLAST of CK935588 vs. ExPASy Swiss-Prot
Match: BRI1_SOLPE (Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.668e-15
Identity = 43/102 (42.16%), Postives = 63/102 (61.76%), Query Frame = 3

Query:  417 YLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNNFENN 722
            +L+L  N ++G+IP ELG +  L  L+L +N++SG IP  L  LK++  L L+ NR  G IP  L  ++ L  +D+S+N+L G IP S PF+  P   F NN
Sbjct:  667 FLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESAPFDTFPDYRFANN 768

HSP 2 Score: 77.0258 bits (188), Expect = 1.561e-13
Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 3

Query:  333 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 674
            +++  L L  + LSG +  EL  L+ L+ L L  N++ G IP  L N   L  + L NN +SG+IP SL +L +L  L+L +N ++G IP EL    SL  +D+++N L G+IP
Sbjct:  475 SKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIP 588

HSP 3 Score: 74.7146 bits (182), Expect = 7.749e-13
Identity = 45/117 (38.46%), Postives = 70/117 (59.83%), Query Frame = 3

Query:  336 RVTRLDLGNSNLSGRLVPELGK--LEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 680
            ++  LD+ ++NL+G +   + K  + +L+ L L  N  +G IP  L N   L+SLDL  N ++G IP SL  L  L  L L  N+L+G+IP+EL+ + +L+ + +  NDL G IP S
Sbjct:  402 KLETLDMSSNNLTGIIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPAS 518

HSP 4 Score: 72.4034 bits (176), Expect = 3.846e-12
Identity = 49/135 (36.30%), Postives = 79/135 (58.52%), Query Frame = 3

Query:  336 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNL-KSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRE-LVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNNFENNPRLE 734
            +++ L+L N+   G LVP+L   E LQYL L  N+ QG  P +L +L K+++ LDL  NN SG +P SL +  SL  + +++N  +G++P + L+ +S++K + +S N   G +P S          F N P+LE
Sbjct:  282 KLSFLNLTNNQFVG-LVPKLPS-ESLQYLYLRGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESLGECSSLELVDISNNNFSGKLPVDTLLKLSNIKTMVLSFNKFVGGLPDS----------FSNLPKLE 404

HSP 5 Score: 70.8626 bits (172), Expect = 1.119e-11
Identity = 47/131 (35.88%), Postives = 67/131 (51.15%), Query Frame = 3

Query:  333 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNNFENN 722
            N +  L L N+   G +   L     L  L+L  N + G+IP  LG+L  L  L L+ N +SG+IP  L  L++L  L L+ N LTG IP  L   + L  + +S+N L G IP S G   ++ +    NN
Sbjct:  427 NNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNN 557

HSP 6 Score: 69.3218 bits (168), Expect = 3.256e-11
Identity = 43/114 (37.72%), Postives = 65/114 (57.02%), Query Frame = 3

Query:  348 LDLGNSNLSGRL-VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAK--LKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 680
            +D+ N+N SG+L V  L KL +++ + L  N   G +P    NL  L +LD+ +NN++G IP  + K  + +L  L L +N   G IP  L   S L  +D+S N L G+IP+S
Sbjct:  357 VDISNNNFSGKLPVDTLLKLSNIKTMVLSFNKFVGGLPDSFSNLPKLETLDMSSNNLTGIIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSS 470

[Close]

BLAST of CK935588 vs. ExPASy Swiss-Prot
Match: BRI1_SOLLC (Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.668e-15
Identity = 43/102 (42.16%), Postives = 63/102 (61.76%), Query Frame = 3

Query:  417 YLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNNFENN 722
            +L+L  N ++G+IP ELG +  L  L+L +N++SG IP  L  LK++  L L+ NR  G IP  L  ++ L  +D+S+N+L G IP S PF+  P   F NN
Sbjct:  667 FLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESAPFDTFPDYRFANN 768

HSP 2 Score: 77.0258 bits (188), Expect = 1.561e-13
Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 3

Query:  333 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 674
            +++  L L  + LSG +  EL  L+ L+ L L  N++ G IP  L N   L  + L NN +SG+IP SL +L +L  L+L +N ++G IP EL    SL  +D+++N L G+IP
Sbjct:  475 SKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIP 588

HSP 3 Score: 74.7146 bits (182), Expect = 7.749e-13
Identity = 45/117 (38.46%), Postives = 70/117 (59.83%), Query Frame = 3

Query:  336 RVTRLDLGNSNLSGRLVPELGK--LEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 680
            ++  LD+ ++NL+G +   + K  + +L+ L L  N  +G IP  L N   L+SLDL  N ++G IP SL  L  L  L L  N+L+G+IP+EL+ + +L+ + +  NDL G IP S
Sbjct:  402 KLETLDMSSNNLTGVIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPAS 518

HSP 4 Score: 72.7886 bits (177), Expect = 2.945e-12
Identity = 50/142 (35.21%), Postives = 73/142 (51.41%), Query Frame = 3

Query:  294 NPCTWFHI-------TCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCG---TIP-TSGP 686
            +PC +  +       T N +  +  LDL  + L G +  ELG + +L  L L  N++ G IP +LG LK++  LDL  N  +G IP SL  L  L  + L++N L+G IP E     +      ++N LCG    IP +SGP
Sbjct:  643 HPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIP-ESAPFDTFPDYRFANNSLCGYPLPIPCSSGP 783

HSP 5 Score: 70.8626 bits (172), Expect = 1.119e-11
Identity = 47/131 (35.88%), Postives = 67/131 (51.15%), Query Frame = 3

Query:  333 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNNFENN 722
            N +  L L N+   G +   L     L  L+L  N + G+IP  LG+L  L  L L+ N +SG+IP  L  L++L  L L+ N LTG IP  L   + L  + +S+N L G IP S G   ++ +    NN
Sbjct:  427 NNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNN 557

HSP 6 Score: 67.781 bits (164), Expect = 9.473e-11
Identity = 42/114 (36.84%), Postives = 64/114 (56.14%), Query Frame = 3

Query:  348 LDLGNSNLSGRL-VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAK--LKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 680
            +D+  +N SG+L V  L KL +++ + L  N   G +P    NL  L +LD+ +NN++G IP  + K  + +L  L L +N   G IP  L   S L  +D+S N L G+IP+S
Sbjct:  357 VDISYNNFSGKLPVDTLSKLSNIKTMVLSFNKFVGGLPDSFSNLLKLETLDMSSNNLTGVIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSS 470

[Close]

BLAST of CK935588 vs. ExPASy Swiss-Prot
Match: PGIP_PYRCO (Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.179e-15
Identity = 59/179 (32.96%), Postives = 91/179 (50.84%), Query Frame = 3

Query:  225 LYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQD-NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKN-------------------------NIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPREL-VGISSLKVVDVSSNDLCGTIPTS 680
            L  ++++  DP  VL SW     + C W+ +TC+   NR+  L +    +SG++   +G L +L+ LE +K                          N+ G++P  L  LK+L  LDL  NN++G IP SL++L +L  LRL+ N+LTG IP      I ++  + +S N L G IPTS
Sbjct:   35 LLQIKKAFGDP-YVLASWKSD-TDCCDWYCVTCDSTTNRINSLTIFAGQVSGQIPALVGDLPYLETLEFHKQPNLTGPIQPAIAKLKGLKSLRLSWTNLSGSVPDFLSQLKNLTFLDLSFNNLTGAIPSSLSELPNLGALRLDRNKLTGHIPISFGQFIGNVPDLYLSHNQLSGNIPTS 211

[Close]

BLAST of CK935588 vs. ExPASy Swiss-Prot
Match: Y5838_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 OS=Arabidopsis thaliana GN=At5g48380 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.845e-15
Identity = 57/182 (31.32%), Postives = 83/182 (45.60%), Query Frame = 3

Query:  219 DALYALRRSLSDPDNVLQSW---DPTLVNPCTWFHITC--NQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLIS-LDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNNFENNPRLEGPEL 746
            D L   +  + DP+  L +W   + T    C +  +TC  + +NRV  + L    L G   P +     L  L+L +NN  G +P  +  L  L++ LDL  N+ SG+IP  ++ +  L  L L  N+ TG +P +L  +  LK   VS N L G IP            F NN  L G  L
Sbjct:   33 DCLRTFKSQVEDPNRYLSTWVFGNETAGYICKFSGVTCWHDDENRVLSIKLSGYGLRGVFPPAVKLCADLTGLDLSRNNFSGPLPANISTLIPLVTILDLSYNSFSGEIPMLISNITFLNTLMLQHNQFTGTLPPQLAQLGRLKTFSVSDNRLVGPIPNFNQTLQFKQELFANNLDLCGKPL 214

[Close]

BLAST of CK935588 vs. ExPASy Swiss-Prot
Match: PGIP1_ARATH (Polygalacturonase inhibitor 1 OS=Arabidopsis thaliana GN=PGIP1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.845e-15
Identity = 58/186 (31.18%), Postives = 96/186 (51.61%), Query Frame = 3

Query:  210 SEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQ---DNRVTRLDLGN-------------------------SNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGI-SSLKVVDVSSNDLCGTIPTS 680
            ++ + L  +++SL++P + L SWDP   + C+W+ + C     ++RVT L + +                         SNL+G + P + KL++L+ L L   N+ G IP  +  LK+L  L+L  N++SG IP SL+ L  ++ L L+ N+LTG IP        ++  + +S N L G IP S
Sbjct:   28 NDKNTLLKIKKSLNNPYH-LASWDPQ-TDCCSWYCLECGDATVNHRVTALTIFSGQISGQIPAEVGDLPYLETLVFRKLSNLTGTIQPTIAKLKNLRMLRLSWTNLTGPIPDFISQLKNLEFLELSFNDLSGSIPSSLSTLPKILALELSRNKLTGSIPESFGSFPGTVPDLRLSHNQLSGPIPKS 211

[Close]

BLAST of CK935588 vs. ExPASy Swiss-Prot
Match: PGIP1_PHAVU (Polygalacturonase inhibitor 1 OS=Phaseolus vulgaris GN=PGIP1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.716e-15
Identity = 59/184 (32.07%), Postives = 86/184 (46.74%), Query Frame = 3

Query:  222 ALYALRRSLSDPDNVLQSWDPTLVNPC--TWFHITCNQDN---RVTRLDL---------------------------GNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSL-KVVDVSSNDLCGTIP 674
            AL  +++ L +P   L SW PT  + C  TW  + C+ D    RV  LDL                           G +NL G + P + KL  L YL +   N+ G IP  L  +K+L++LD   N +SG +PPS++ L +L  +  + NR++G IP      S L   + +S N L G IP
Sbjct:   39 ALLQIKKDLGNP-TTLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGHNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLGGITFDGNRISGAIPDSYGSFSKLFTAMTISRNRLTGKIP 220

[Close]

BLAST of CK935588 vs. ExPASy Swiss-Prot
Match: IKU2_ARATH (Receptor-like protein kinase HAIKU2 OS=Arabidopsis thaliana GN=IKU2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.854e-15
Identity = 51/125 (40.80%), Postives = 75/125 (60.00%), Query Frame = 3

Query:  333 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLK--VVDVSSNDLCGTIP---TSGPFE 692
            N +  ++L  +  SG +    GKL+ L  L L +NN+ G IP  LG   SL+ L+   N++S +IP SL  LK L  L L+ N+L+G IP   VG+S+LK  ++D+S+N L G++P    SG FE
Sbjct:  460 NSLVSVNLRMNKFSGIVPESFGKLKELSSLILDQNNLSGAIPKSLGLCTSLVDLNFAGNSLSEEIPESLGSLKLLNSLNLSGNKLSGMIP---VGLSALKLSLLDLSNNQLTGSVPESLVSGSFE 581

HSP 2 Score: 81.2629 bits (199), Expect = 8.279e-15
Identity = 46/136 (33.82%), Postives = 75/136 (55.15%), Query Frame = 3

Query:  336 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPV-----------------------ELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 674
            R+  L+L ++ +SG +  E+ +L++L+ LE+Y N++ G +P+                       EL  LK+L+SL ++ N ++G+IP      KSL  L L  N+LTG++PR L   ++ K +DVS N L G IP
Sbjct:  222 RLQNLELSDNQISGEIPKEIVQLKNLRQLEIYSNDLTGKLPLGFRNLTNLRNFDASNNSLEGDLSELRFLKNLVSLGMFENRLTGEIPKEFGDFKSLAALSLYRNQLTGKLPRRLGSWTAFKYIDVSENFLEGQIP 357

HSP 3 Score: 78.1814 bits (191), Expect = 7.009e-14
Identity = 49/138 (35.51%), Postives = 74/138 (53.62%), Query Frame = 3

Query:  345 RLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPF--EHIPLNNFENNPRLEGPELLG 752
            RL + N++LSG +   +  L +LQ+L+L  N  +G +  ++GN KSL SLDL NN  SG +P  ++   SLV + L  N+ +G +P     +  L  + +  N+L G IP S       + LN   N+   E PE LG
Sbjct:  392 RLRVSNNSLSGMIPSGIWGLPNLQFLDLASNYFEGNLTGDIGNAKSLGSLDLSNNRFSGSLPFQISGANSLVSVNLRMNKFSGIVPESFGKLKELSSLILDQNNLSGAIPKSLGLCTSLVDLNFAGNSLSEEIPESLG 529

HSP 4 Score: 75.8702 bits (185), Expect = 3.478e-13
Identity = 53/144 (36.81%), Postives = 70/144 (48.61%), Query Frame = 3

Query:  348 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNNFENNPRLEG--PELLGLASYDTN 773
            LDL N+  SG L  ++     L  + L  N   G +P   G LK L SL L  NN+SG IP SL    SLV L    N L+ +IP  L  +  L  +++S N L G IP       + L +  NN +L G  PE L   S++ N
Sbjct:  441 LDLSNNRFSGSLPFQISGANSLVSVNLRMNKFSGIVPESFGKLKELSSLILDQNNLSGAIPKSLGLCTSLVDLNFAGNSLSEEIPESLGSLKLLNSLNLSGNKLSGMIPVGLSALKLSLLDLSNN-QLTGSVPESLVSGSFEGN 583

HSP 5 Score: 75.485 bits (184), Expect = 4.543e-13
Identity = 54/163 (33.13%), Postives = 86/163 (52.76%), Query Frame = 3

Query:  333 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPV--------------------------ELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIP-LNNFE-NNPRLEG 737
            NR+  LDLG +N SG   P +  L+ L++L L  + I G  P                           E+ NL +L  + L N++I+GKIP  +  L  L  L L+DN+++G+IP+E+V + +L+ +++ SNDL G +P    F ++  L NF+ +N  LEG
Sbjct:  124 NRLRYLDLGINNFSGEF-PAIDSLQLLEFLSLNASGISGIFPWSSLKDLKRLSFLSVGDNRFGSHPFPREILNLTALQWVYLSNSSITGKIPEGIKNLVRLQNLELSDNQISGEIPKEIVQLKNLRQLEIYSNDLTGKLPLG--FRNLTNLRNFDASNNSLEG 283

HSP 6 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 41/131 (31.30%), Postives = 64/131 (48.85%), Query Frame = 3

Query:  348 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPT------SGPFEHIPLNNFENN 722
            L +  + L+G +  E G  + L  L LY+N + G +P  LG+  +   +D+  N + G+IPP + K   +  L +  NR TGQ P       +L  + VS+N L G IP+      +  F  +  N FE N
Sbjct:  297 LGMFENRLTGEIPKEFGDFKSLAALSLYRNQLTGKLPRRLGSWTAFKYIDVSENFLEGQIPPYMCKKGVMTHLLMLQNRFTGQFPESYAKCKTLIRLRVSNNSLSGMIPSGIWGLPNLQFLDLASNYFEGN 427

[Close]

BLAST of CK935588 vs. ExPASy Swiss-Prot
Match: Y5977_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.339e-15
Identity = 62/189 (32.80%), Postives = 86/189 (45.50%), Query Frame = 3

Query:  210 SEGDALYALRRSLSDPDNVLQSWDPTLVNPC--TWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKN---------NI----------------QGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIP----RELVGISSLKVV---DVSSNDLCGTIP 674
            ++G    AL+   ++ D + +SW  +  +PC   W  ITCN DNRV  + L N NL G+L  E+  L  LQ L+L  N         NI                 G IP  +GNL+ L  L L  N  SG IP S+ +L  L +  + DN+L G++P      L G+  L         +N L G IP
Sbjct:   27 TDGSDFTALQALKNEWDTLSKSWKSS--DPCGTEWVGITCNNDNRVVSISLTNRNLKGKLPTEISTLSELQTLDLTGNPELSGPLPANIGNLRKLTFLSLMGCAFNGPIPDSIGNLEQLTRLSLNLNKFSGTIPASMGRLSKLYWFDIADNQLEGKLPVSDGASLPGLDMLLQTGHFHFGNNKLSGEIP 213

The following BLAST results are available for this feature:

BLAST of CK935588 vs. ExPASy Swiss-Prot

BLAST of CK935588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112


Match Name	E-value	Identity	Description
PGIP1_ORYSJ	1.668e-15	30.20	Polygalacturonase inhibitor 1 OS=Oryza sativa subs...	[more]
DR100_ARATH	1.668e-15	33.75	DNA-damage-repair/toleration protein DRT100 OS=Ara...	[more]
BRI1_SOLPE	1.668e-15	42.16	Systemin receptor SR160 OS=Solanum peruvianum PE=1...	[more]
BRI1_SOLLC	1.668e-15	42.16	Brassinosteroid LRR receptor kinase OS=Solanum lyc...	[more]
PGIP_PYRCO	2.179e-15	32.96	Polygalacturonase inhibitor OS=Pyrus communis GN=P...	[more]
Y5838_ARATH	2.845e-15	31.32	Probably inactive leucine-rich repeat receptor-lik...	[more]
PGIP1_ARATH	2.845e-15	31.18	Polygalacturonase inhibitor 1 OS=Arabidopsis thali...	[more]
PGIP1_PHAVU	3.716e-15	32.07	Polygalacturonase inhibitor 1 OS=Phaseolus vulgari...	[more]
IKU2_ARATH	4.854e-15	40.80	Receptor-like protein kinase HAIKU2 OS=Arabidopsis...	[more]
Y5977_ARATH	6.339e-15	32.80	Probable leucine-rich repeat receptor-like protein...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004554_A09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_A09 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK935588 ID=CK935588; Name=CK935588; organism=Citrus sinensis; type=EST; length=884bp
GGGGGGTGACTCTCTGATATTCCCAAAGCCGATCCTCTTTCTCTTTGACA
AACACAAACCCTAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCATGGCGGC
GGCGGCGGCGGCGGCAGCGCAGTGGTTGAGTGCGTGTATAACGTTCAGCG
TAAGCCTAATAATAATAATAATAGGGAGCAGCAGCTTGGTGGCGGTGGTG
AGTGGAAACTCGGAGGGGGACGCGCTGTACGCGCTCAGGAGAAGCCTATC
AGATCCCGATAACGTGCTTCAGAGCTGGGATCCAACTCTCGTCAATCCCT
GCACTTGGTTTCACATAACCTGTAATCAGGACAACCGCGTTACCCGACTG
GATTTGGGTAATTCAAATCTATCCGGCCGTCTCGTCCCTGAACTGGGCAA
GCTCGAGCATTTGCAATACCTGGAACTTTACAAAAACAACATCCAAGGAA
CTATCCCTGTCGAGCTCGGTAACTTGAAGAGCCTCATCAGCTTGGACTTG
TATAATAACAACATCTCGGGGAAAATCCCTCCTTCCTTGGCTAAATTGAA
ATCTCTTGTTTTTTTGCGGCTTAACGATAATCGGCTAACTGGACAAATTC
CCAGGGAACTTGTTGGAATTTCAAGTCTCAAAGTTGTGGATGTTTCAAGC
AATGATCTGTGTGGAACAATTCCTACAAGCGGACCATTTGAACACATCCC
ACTCAACAACTTTGAGAATAACCCTCGATTAGAAGGTCCAGAGTTGCTGG
GACTTGCAAGTTATGACACAAACTGCTCATAAACGATTGATTGTTGCTTC
AAGCTCTACTCAGGTTTCGAATAGATGTGTCCGCGAAGATTGAAAGCGTC
TTTACCTAANAAGCATAGTGTTATGGGTGAAATG