CK935603

Overview
NameCK935603
Unique NameCK935603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: TIP43_ORYSJ (Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.468e-17
Identity = 64/192 (33.33%), Postives = 93/192 (48.44%), Query Frame = 3
Query:  249 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTV-GIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLG 821
            RA +AE + TFLF++  V + M   K      T+ G+  +A A   ++ V+V     +SGGHINPAVTLGL     ++L R+  Y   Q LG+     ++    G    G  A   +  A G      +  E + TF L++ V++    +R A    V  L PL +G  V    LA  P +G  +NPARS G
Sbjct:   19 RAVVAELLLTFLFVFSGVGSAMAAAKLGGGGDTIMGLTAVAAAHALVVAVMVSAGLHVSGGHINPAVTLGLAAGGHITLFRSALYAAAQLLGSSLACLLLAALTG----GEEAVPVHAPAPGVGAARAVAMEAVLTFSLLFAVYATVVDRRRA----VGALGPLLVGLVVGANILAGGPYSGASMNPARSFG 202          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: AQPZ_SHIFL (Aquaporin Z OS=Shigella flexneri GN=aqpZ PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.468e-17
Identity = 56/172 (32.56%), Postives = 85/172 (49.42%), Query Frame = 3
Query:  348 VGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSA--TDAKRSARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAXIIYNKDRGW 854
            +G  G+A A G  +  + +    ISGGH NPAVT+GL+   +      + Y++ Q +G I  A ++   + +G+ G  A  +   ++GY +    G  ++   V V  V SA        A D   P   AP+ IG A+ L+HL +IP+T T +NPARS    I      GW
Sbjct:   34 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQG---GW 200          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: AQPZ_ECOLI (Aquaporin Z OS=Escherichia coli (strain K12) GN=aqpZ PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.468e-17
Identity = 56/172 (32.56%), Postives = 85/172 (49.42%), Query Frame = 3
Query:  348 VGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSA--TDAKRSARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAXIIYNKDRGW 854
            +G  G+A A G  +  + +    ISGGH NPAVT+GL+   +      + Y++ Q +G I  A ++   + +G+ G  A  +   ++GY +    G  ++   V V  V SA        A D   P   AP+ IG A+ L+HL +IP+T T +NPARS    I      GW
Sbjct:   34 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQG---GW 200          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: AQPZ_ECOL6 (Aquaporin Z OS=Escherichia coli O6 GN=aqpZ PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.468e-17
Identity = 56/172 (32.56%), Postives = 85/172 (49.42%), Query Frame = 3
Query:  348 VGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSA--TDAKRSARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAXIIYNKDRGW 854
            +G  G+A A G  +  + +    ISGGH NPAVT+GL+   +      + Y++ Q +G I  A ++   + +G+ G  A  +   ++GY +    G  ++   V V  V SA        A D   P   AP+ IG A+ L+HL +IP+T T +NPARS    I      GW
Sbjct:   34 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQG---GW 200          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: AQPZ_ECO57 (Aquaporin Z OS=Escherichia coli O157:H7 GN=aqpZ PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.468e-17
Identity = 56/172 (32.56%), Postives = 85/172 (49.42%), Query Frame = 3
Query:  348 VGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSA--TDAKRSARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAXIIYNKDRGW 854
            +G  G+A A G  +  + +    ISGGH NPAVT+GL+   +      + Y++ Q +G I  A ++   + +G+ G  A  +   ++GY +    G  ++   V V  V SA        A D   P   AP+ IG A+ L+HL +IP+T T +NPARS    I      GW
Sbjct:   34 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQG---GW 200          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: AQPZ_VIBPA (Aquaporin Z OS=Vibrio parahaemolyticus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.103e-16
Identity = 52/164 (31.71%), Postives = 85/164 (51.83%), Query Frame = 3
Query:  348 VGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGD--------GLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARS 815
            +G+ G+A A G  +  + +    ISG H+NPAVT+GL+   +        Y++ Q +G +   G++   +  GQ G    G+   A+GY +           L +EI+ T + +  +  ATD KR+ +       AP+ IG  + L+HL +IP+T T +NPARS
Sbjct:   33 IGLLGVALAFGLTVLTMAFAIGHISGCHLNPAVTVGLWAGGRFDTKDVAPYIIAQVIGGLIAGGILY-VIATGQAGFDVVGSGFAANGYGEHSPGQYSMLAALVSEIVMTMMFLIVIMGATD-KRAPQG-----FAPIAIGLCLTLIHLISIPVTNTSVNPARS 189          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: AQPZ_VIBVU (Aquaporin Z OS=Vibrio vulnificus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.441e-16
Identity = 49/169 (28.99%), Postives = 85/169 (50.30%), Query Frame = 3
Query:  348 VGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAH--------GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAXI 830
            +G+ G++ A G  +  + +    ISG H+NPAVT+GL+   +      + Y++ Q +G +   GV+   + +GQ G  A  +   ++        GY+    L  E++ T + +  +  ATD +           AP+ IG  + L+HL +IP+T T +NPARS G  +
Sbjct:   33 IGLLGVSLAFGLTVLTMAFAIGHISGCHLNPAVTIGLWAGGRFEAKEIVPYILAQVIGGVIAGGVLY-TIASGQMGFDATSSGFASNGYGEHSPGGYSLTSALVTEVVMTMMFLLVILGATDQRAPQG------FAPIAIGLCLTLIHLISIPVTNTSVNPARSTGVAL 194          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: TIP44_MAIZE (Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.458e-16
Identity = 68/203 (33.50%), Postives = 101/203 (49.75%), Query Frame = 3
Query:  249 RAGIAEFIATFLFLYISVLTVM--GVVKSNTKCSTVGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGA------EIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAXII 833
            RA +AE I TFLF++  V + M  G +      + VG+  +A A   ++ V+V     +SGGHINPAVTLGL    +++L R+  Y+  Q LG+   A ++  F+     G       V  H    G G+GA      E + TF L++ V++     R A     P+L  L +G  V    LA  P +G  +NPARS G  ++
Sbjct:   19 RAVLAELILTFLFVFAGVGSAMATGKLAGGGGDTVVGLTAVALAHTLVVAVMVSAGLHVSGGHINPAVTLGLAATGRITLFRSALYVAAQLLGSTL-ACLLLAFLAVADSG-------VPVHAL--GAGVGALRGVLMEAVLTFSLLFAVYATVVDPRRAVGGMGPLLVGLVVGANV----LAGGPFSGASMNPARSFGPALV 207          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: AQPZ_BRAJA (Aquaporin Z OS=Bradyrhizobium japonicum GN=aqpZ PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.458e-16
Identity = 62/211 (29.38%), Postives = 95/211 (45.02%), Query Frame = 3
Query:  261 AEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAIC-------------GAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAXIIYNKDRGW 854
            AE I TF   +    +   V+ +      +G+ G++ A G  +  + Y    ISG H+NPAVT+GL    +    + L Y++ Q  GAI              G  V KGF   G      G  +++A   T       E++ T + ++ +  AT  +  A        APL IG A+ ++HL +IP+T T +NPARS G  +      GW
Sbjct:    8 AEAIGTFWLTFAGCGSA--VIAAGFPQVGIGLVGVSLAFGLSVVTMAYAIGHISGCHLNPAVTVGLAAGGRFPAGQILPYVIAQVCGAIVAAELLYIIASGAPGFDVTKGFASNGYDAHSPGQYSMMACFLT-------EVVMTMMFLFIIMGATHGRAPAG------FAPLAIGLALVMIHLVSIPVTNTSVNPARSTGPALFVG---GW 200          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: AQPZ_VIBVY (Aquaporin Z OS=Vibrio vulnificus (strain YJ016) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.193e-16
Identity = 49/169 (28.99%), Postives = 84/169 (49.70%), Query Frame = 3
Query:  348 VGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAH--------GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAXI 830
            +G+ G++ A G  +  + +    ISG H+NPAVT+GL+   +      + Y++ Q +G +   GV+   + +GQ G  A  +   ++        GY+    L  EI+   + +  +  ATD +           AP+ IG  + L+HL +IP+T T +NPARS G  +
Sbjct:   33 IGLLGVSLAFGLTVLTMAFAIGHISGCHLNPAVTIGLWAGGRFEAKEIVPYILAQVIGGVIAGGVLY-TIASGQMGFDATSSGFASNGYGEHSPGGYSLTSALVTEIVMAMMFLLVILGATDQRAPQG------FAPIAIGLCLTLIHLISIPVTNTSVNPARSTGVAL 194          
The following BLAST results are available for this feature:
BLAST of CK935603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
TIP43_ORYSJ6.468e-1733.33Probable aquaporin TIP4-3 OS=Oryza sativa subsp. j... [more]
AQPZ_SHIFL6.468e-1732.56Aquaporin Z OS=Shigella flexneri GN=aqpZ PE=3 SV=2[more]
AQPZ_ECOLI6.468e-1732.56Aquaporin Z OS=Escherichia coli (strain K12) GN=aq... [more]
AQPZ_ECOL66.468e-1732.56Aquaporin Z OS=Escherichia coli O6 GN=aqpZ PE=3 SV... [more]
AQPZ_ECO576.468e-1732.56Aquaporin Z OS=Escherichia coli O157:H7 GN=aqpZ PE... [more]
AQPZ_VIBPA1.103e-1631.71Aquaporin Z OS=Vibrio parahaemolyticus GN=aqpZ PE=... [more]
AQPZ_VIBVU1.441e-1628.99Aquaporin Z OS=Vibrio vulnificus GN=aqpZ PE=3 SV=1[more]
TIP44_MAIZE2.458e-1633.50Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1[more]
AQPZ_BRAJA2.458e-1629.38Aquaporin Z OS=Bradyrhizobium japonicum GN=aqpZ PE... [more]
AQPZ_VIBVY4.193e-1628.99Aquaporin Z OS=Vibrio vulnificus (strain YJ016) GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_G12 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935603 ID=CK935603; Name=CK935603; organism=Citrus sinensis; type=EST; length=861bp
GGGGATTCTCATCACAACATCAAACGGCCACAAACAAAAAAGCAAGTGCT
TCTTATTGACTGTTTTGTGTTTTTGAGGGACTAGCAGAAATGGAAGGTAA
AGAAGAGGATGTTAGACTGGGAGCCAACAAGTTCGCCGAGAGGCAGCCGA
TTGGGACGGCGGCTCAGACCCAAGATGGGAAGGACTACGTTGAGCCCCCA
CCGGCGCCGCTCTTTGAGCCCGGCGAGCTCAAGTCTTGGTCGTTTTACAG
GGCCGGTATAGCCGAGTTCATAGCCACTTTTCTTTTCTTGTACATCTCCG
TACTGACAGTGATGGGCGTCGTCAAGTCCAATACCAAGTGCTCAACCGTC
GGCATTCAAGGGATTGCATGGGCCCTCGGTGGCATGATCTTCGTGCTCGT
TTACTGCACAGCTGGCATCTCGGGTGGTCATATCAACCCGGCGGTGACAC
TCGGCCTGTTCTTGGCGAGGAAGCTGTCGCTGACACGTGCACTTTTCTAC
ATGGTGATGCAGTGTCTGGGAGCCATCTGCGGTGCTGGCGTTGTAAAGGG
TTTCATGGGTGCCGGCCAATACGGGCGGCTCGCCGGCGGTGCCAACGTCG
TAGCTCATGGCTACACCAAGGGTGATGGTCTTGGTGCCGAGATTATTGGT
ACTTTTGTTCTTGTCTACACAGTTTTCTCTGCCACTGATGCCAAACGGAG
CGCCAGGGACTCTCATGTTCCTATTTTGGCTCCTCTGCCGATTGGGTTCG
CTGTGTTTTTGGTTCACTTGGCTACCATCCCAATTACCGGAACTGGCATC
AACCCAGCGAGGAGTCTTGGAGCTGNCATCATCTACAACAAGGACCGCGG
TTGGGATNNNN
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