CK935603

Overview
NameCK935603
Unique NameCK935603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: NIP31_ARATH (Aquaporin NIP3-1 OS=Arabidopsis thaliana GN=NIP3-1 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.544e-13
Identity = 59/205 (28.78%), Postives = 94/205 (45.85%), Query Frame = 3
Query:  228 LKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVK-GFMGAGQYGRLAGGANVVAH-GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAXIIY 836
            L S SF +  I EF+ TF  ++        +V + T    V + GIA   G ++ V++Y    +SG H NPAV++    ++K    +   Y+  Q LG+   A V++  F        L G   V  +   +       E I TF L++ + +    KR+         A + IG  + L  L + PI+G  +NPARSLG  +I+
Sbjct:   36 LVSVSFVQKLIGEFVGTFTMIFAGC---SAIVVNETYGKPVTLPGIALVWGLVVTVMIYSIGHVSGAHFNPAVSIAFASSKKFPFNQVPGYIAAQLLGSTLAAAVLRLVFHLDDDVCSLKGDVYVGTYPSNSNTTSFVMEFIATFNLMFVISAVATDKRATGS-----FAGIAIGATIVLDILFSGPISGASMNPARSLGPALIW 232          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: TIP42_ORYSJ (Probable aquaporin TIP4-2 OS=Oryza sativa subsp. japonica GN=TIP4-2 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.322e-13
Identity = 63/206 (30.58%), Postives = 97/206 (47.09%), Query Frame = 3
Query:  213 FEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWALGGMIFVLVYCTAG--ISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSA-TDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLG 821
            +EPG L      RA   E + TFLF++I V + +   K+            A A+   + V V  TAG  +SGGH+NPAVTL L +   ++L R+  Y+  Q  G+     +++   G       A   + +A G     G+ AE + TF L+  + +   D +R+A     P+L  L +G       +A   +TG  +NPARS G
Sbjct:   18 WEPGCL------RAVAGELLFTFLFVFIGVASTITAGKAAGGAGEAAAVTAA-AMAQALVVAVLATAGFHVSGGHLNPAVTLSLAVGGHITLFRSALYVAAQLAGSSLACLLLRCLTGGA-----ATPVHALADGVGPVQGVAAEAVFTFTLLLVICATILDPRRAAPPGTGPLLTGLLVGANT----VAGGALTGASMNPARSFG 207          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: TIP51_MAIZE (Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.667e-13
Identity = 63/206 (30.58%), Postives = 95/206 (46.12%), Query Frame = 3
Query:  249 RAGIAEFIATFLFLYISVLTVMGVVKSNTK--CSTVG---IQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSA------RDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAXII 833
            R+ +AEFI+TFLF++ +V + +      T    S+ G      +A A G  +F  V   A +SGGH+NPAVT    +  ++ +  A+FY   Q LGA   A +      AG+          +A   T   G   E + TF+LVYTV    + +  +      R+     L  L +G       LA   +TG  +NPARS G  ++
Sbjct:   20 RSYLAEFISTFLFVFTAVGSAISARMLTTPDVTSSAGPLVATAVAQAFG--LFAAVLIAADVSGGHVNPAVTFAYAIGGRIGVPSAMFYWASQLLGATF-ACLSLNLFSAGE----EVPTTRIAVAMTGFGGAVLEGVLTFLLVYTVHVVGEREPRSRGGDGKREFAATALGALAVGLTQGAFVLAAGALTGASMNPARSFGPAVV 218          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: NIP11_MAIZE (Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.667e-13
Identity = 59/202 (29.21%), Postives = 92/202 (45.54%), Query Frame = 3
Query:  243 FYRAGIAEFIATFLFLYISVLTVMGVVKSN-TKCSTVGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQY----GRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAXII 833
            F +  IAE   T+  ++       G V  N +K   +   G+A   G  + V+VY    ISG H NPAVTL    + +    +   Y++ Q LGA   +G ++  M  G++    G L  G+ V          L  EII TF L++ +       R+  +     LA L +G  + L  L   P++G  +NPARS+G  ++
Sbjct:   42 FIQKIIAEIFGTYFLMFAGC----GAVTINASKNGQITFPGVAIVWGLAVMVMVYAVGHISGAHFNPAVTLAFATSGRFPWRQLPAYVLAQMLGATLASGTLR-LMFGGRHEHFPGTLPTGSEV--------QSLVIEIITTFYLMFVISGVATDNRAIGE-----LAGLAVGATILLNVLIAGPVSGASMNPARSVGPALV 225          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: GLPF_SHIFL (Glycerol uptake facilitator protein OS=Shigella flexneri GN=glpF PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.667e-13
Identity = 57/207 (27.54%), Postives = 93/207 (44.93%), Query Frame = 3
Query:  258 IAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGF---------------MGAGQYGRLAGGANVVAHGYTK-GDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAXI 830
            IAEF+ T L ++  V  V  +  +        I  + W LG  + + +Y TAG+SG H+NPAVT+ L+L       + + ++V Q  GA C A +V G                 G+ +   LAG  +   + +         E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR  G  +
Sbjct:   12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEIS-VIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP---LAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKV 212          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: GLPF_ECOLI (Glycerol uptake facilitator protein OS=Escherichia coli (strain K12) GN=glpF PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.667e-13
Identity = 57/207 (27.54%), Postives = 93/207 (44.93%), Query Frame = 3
Query:  258 IAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGF---------------MGAGQYGRLAGGANVVAHGYTK-GDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAXI 830
            IAEF+ T L ++  V  V  +  +        I  + W LG  + + +Y TAG+SG H+NPAVT+ L+L       + + ++V Q  GA C A +V G                 G+ +   LAG  +   + +         E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR  G  +
Sbjct:   12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEIS-VIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP---LAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKV 212          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: GLPF_ECOL6 (Glycerol uptake facilitator protein OS=Escherichia coli O6 GN=glpF PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.667e-13
Identity = 57/207 (27.54%), Postives = 93/207 (44.93%), Query Frame = 3
Query:  258 IAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGF---------------MGAGQYGRLAGGANVVAHGYTK-GDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAXI 830
            IAEF+ T L ++  V  V  +  +        I  + W LG  + + +Y TAG+SG H+NPAVT+ L+L       + + ++V Q  GA C A +V G                 G+ +   LAG  +   + +         E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR  G  +
Sbjct:   12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEIS-VIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP---LAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKV 212          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: GLPF_ECO57 (Glycerol uptake facilitator protein OS=Escherichia coli O157:H7 GN=glpF PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.667e-13
Identity = 57/207 (27.54%), Postives = 93/207 (44.93%), Query Frame = 3
Query:  258 IAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGF---------------MGAGQYGRLAGGANVVAHGYTK-GDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAXI 830
            IAEF+ T L ++  V  V  +  +        I  + W LG  + + +Y TAG+SG H+NPAVT+ L+L       + + ++V Q  GA C A +V G                 G+ +   LAG  +   + +         E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR  G  +
Sbjct:   12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEIS-VIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP---LAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKV 212          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.401e-13
Identity = 62/198 (31.31%), Postives = 91/198 (45.96%), Query Frame = 3
Query:  249 RAGIAEFIATFLFLYISVLTVM-----GVVKSNTKCSTVGIQGIAWALGGMIFVLVYCTAG--ISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLG 821
            RA +AE + TFLF++  V   M     G        +T+    IA AL   + V    TAG  +SGGH+NPAVT+G+ +   ++  RAL Y+  Q L +     +++   G      +    + +  G     GL  E+I TF L++  ++     R    S V  + PL  G  V    LA    TG  +NPARS G
Sbjct:   26 RAVLAELVLTFLFVFTGVSASMAAGAGGKPGEAMPMATLAAVAIAHALAAGVLV----TAGFHVSGGHLNPAVTVGILVRGHITKLRALLYVAAQLLASSLACILLRYLSGG-----MVTPVHALGAGIRPMQGLVMEVILTFSLLFVTYAMILDPR----SQVRTIGPLLTGLIVGANSLAGGNFTGASMNPARSFG 210          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: TIP41_ORYSJ (Probable aquaporin TIP4-1 OS=Oryza sativa subsp. japonica GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.401e-13
Identity = 61/203 (30.05%), Postives = 93/203 (45.81%), Query Frame = 3
Query:  222 GELKSWSFYRAGIAEFIATFLFLYISVLTVM--GVVK-SNTKCSTVGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLG 821
            GE+      RA +AE + TF+F++  V   M  GV + +        + G+A A      VLV     +SGGH+NPAVT+ L     ++  R+  Y+  Q L +     +++   G      +A   + +  G     GL  EII TF L++ V++     RS+    VP   PL  G  V    +A    +G  +NPARS G
Sbjct:   11 GEVVDAGCVRAVLAELVLTFVFVFTGVAATMAAGVPEVAGAAMPMAALAGVAIATALAAGVLVTAGFHVSGGHLNPAVTVALLARGHITAFRSALYVAAQLLASSLACILLRYLTGG-----MATPVHTLGSGIGPMQGLVMEIILTFSLLFVVYATILDPRSS----VPGFGPLLTGLIVGANTIAGGNFSGASMNPARSFG 204          
The following BLAST results are available for this feature:
BLAST of CK935603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
NIP31_ARATH2.544e-1328.78Aquaporin NIP3-1 OS=Arabidopsis thaliana GN=NIP3-1... [more]
TIP42_ORYSJ3.322e-1330.58Probable aquaporin TIP4-2 OS=Oryza sativa subsp. j... [more]
TIP51_MAIZE5.667e-1330.58Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1[more]
NIP11_MAIZE5.667e-1329.21Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1[more]
GLPF_SHIFL5.667e-1327.54Glycerol uptake facilitator protein OS=Shigella fl... [more]
GLPF_ECOLI5.667e-1327.54Glycerol uptake facilitator protein OS=Escherichia... [more]
GLPF_ECOL65.667e-1327.54Glycerol uptake facilitator protein OS=Escherichia... [more]
GLPF_ECO575.667e-1327.54Glycerol uptake facilitator protein OS=Escherichia... [more]
TIP42_MAIZE7.401e-1331.31Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]
TIP41_ORYSJ7.401e-1330.05Probable aquaporin TIP4-1 OS=Oryza sativa subsp. j... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004553_G12 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935603 ID=CK935603; Name=CK935603; organism=Citrus sinensis; type=EST; length=861bp
GGGGATTCTCATCACAACATCAAACGGCCACAAACAAAAAAGCAAGTGCT
TCTTATTGACTGTTTTGTGTTTTTGAGGGACTAGCAGAAATGGAAGGTAA
AGAAGAGGATGTTAGACTGGGAGCCAACAAGTTCGCCGAGAGGCAGCCGA
TTGGGACGGCGGCTCAGACCCAAGATGGGAAGGACTACGTTGAGCCCCCA
CCGGCGCCGCTCTTTGAGCCCGGCGAGCTCAAGTCTTGGTCGTTTTACAG
GGCCGGTATAGCCGAGTTCATAGCCACTTTTCTTTTCTTGTACATCTCCG
TACTGACAGTGATGGGCGTCGTCAAGTCCAATACCAAGTGCTCAACCGTC
GGCATTCAAGGGATTGCATGGGCCCTCGGTGGCATGATCTTCGTGCTCGT
TTACTGCACAGCTGGCATCTCGGGTGGTCATATCAACCCGGCGGTGACAC
TCGGCCTGTTCTTGGCGAGGAAGCTGTCGCTGACACGTGCACTTTTCTAC
ATGGTGATGCAGTGTCTGGGAGCCATCTGCGGTGCTGGCGTTGTAAAGGG
TTTCATGGGTGCCGGCCAATACGGGCGGCTCGCCGGCGGTGCCAACGTCG
TAGCTCATGGCTACACCAAGGGTGATGGTCTTGGTGCCGAGATTATTGGT
ACTTTTGTTCTTGTCTACACAGTTTTCTCTGCCACTGATGCCAAACGGAG
CGCCAGGGACTCTCATGTTCCTATTTTGGCTCCTCTGCCGATTGGGTTCG
CTGTGTTTTTGGTTCACTTGGCTACCATCCCAATTACCGGAACTGGCATC
AACCCAGCGAGGAGTCTTGGAGCTGNCATCATCTACAACAAGGACCGCGG
TTGGGATNNNN
back to top