CK935603

Overview
NameCK935603
Unique NameCK935603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: NIP31_ORYSJ (Aquaporin NIP3-1 OS=Oryza sativa subsp. japonica GN=NIP3-1 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.265e-12
Identity = 56/191 (29.32%), Postives = 86/191 (45.03%), Query Frame = 3
Query:  261 AEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAXI 830
            AEF+ TF+ ++ +    +   K     S  G    A   G  +  ++  T  ISG H+NP++T+     R     +   Y+ +Q LG+IC    +KG      +  L+GG  V     +       E I TF L++ V + ATD +       V  LA + +G AV L  L   P TG  +NP R+LG  +
Sbjct:   87 AEFVGTFILIFFATAAPIVNQKYGGAISPFGNAACA---GLAVTTIILSTGHISGAHLNPSLTIAFAALRHFPWLQVPAYVAVQVLGSICAGFALKGVF----HPFLSGGVTVPDPTISTAQAFFTEFIITFNLLFVVTAVATDTRA------VGELAGIAVGAAVTLNILIAGPTTGGSMNPVRTLGPAV 264          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: GLPF_PSEAE (Glycerol uptake facilitator protein OS=Pseudomonas aeruginosa GN=glpF PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.069e-11
Identity = 56/214 (26.17%), Postives = 92/214 (42.99%), Query Frame = 3
Query:  240 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGF---------------MGAGQYGRLAGGANVVAH-GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAXII 833
            S +   +AEF+ T L ++     V  +  +        I  I W +G  + + +Y +AG+SG H+NPAV++ L+L       +  FY+  Q  GA C A +V                   G+     LA   +   H   + G     E++ T +L+  + + TD            LAPL IG  + ++  A  P+TG  +NPAR  G  ++
Sbjct:    9 SLFGQCLAEFLGTALLIFFGTGCVAALKVAGASFGLWEIS-IIWGVG--VSMAIYLSAGVSGAHLNPAVSIALWLFAGFEGRKLPFYITAQVAGAFCAAALVYTLYSSLFIEFEQAQNIVRGSQDSLALASVFSTYPHPALSVGQAFLVEVVITAILMAVIMALTDDGNGLPRGP---LAPLLIGLLIAVIGSAMGPLTGFAMNPARDFGPKLM 216          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: AQPM_ARCFU (Probable aquaporin aqpM OS=Archaeoglobus fulgidus GN=aqpM PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.823e-11
Identity = 64/203 (31.53%), Postives = 92/203 (45.32%), Query Frame = 3
Query:  261 AEFIATFLFLYI----SVLTVM---GVVKSNTKCSTVGIQGIA--WALGGMIFVL-----VYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMG--AGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLG 821
            AE + TF+ ++     +V+T+M   G  K N     +G  G    W   GM F L     +Y    ISG HINPAVT+ L+   +      + Y+V Q +GA  G+ +    +G  A   G L   A     GY  G  +  E IGTF+L+  +      +R+      P  A L IG  V  +      ITG+ +NPAR+ G
Sbjct:   11 AEVVGTFILVFFGPGAAVITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFALAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGPAAATVGGLGATAPFPGIGY--GQAILTEAIGTFLLMLVIMGVAVDERAP-----PGFAGLVIGLTVGGIITTIGNITGSSLNPARTFG 206          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: GLPF_STRR6 (Glycerol uptake facilitator protein OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=glpF PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.381e-11
Identity = 57/198 (28.79%), Postives = 90/198 (45.45%), Query Frame = 3
Query:  264 EFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYT------KGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAXIIYN 839
            EF+ T + + +    V GVV   TK ++ G   I    G  + V V+ +  +S  H+NPAVT+G+ L   L     L Y++ Q  GA+ G  ++        Y       N++A   T          L +EI+GTFVLV T+F+       A       +    +G  +  + L+    TG  +NPAR LG  I+++
Sbjct:    8 EFLGTLILILLGNGVVAGVVLPKTKSNSSGWIVITMGWGIAVAVAVFVSGKLSPAHLNPAVTIGVALKGGLPWASVLPYILAQFAGAMLGQ-ILVWLQFKPHYEAEENAGNILATFSTGPAIKDTVSNLISEILGTFVLVLTIFALGLYDFQAG------IGTFAVGTLIVGIGLSLGGTTGYALNPARDLGPRIMHS 198          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: YFF4_YEAST (Uncharacterized membrane protein YFL054C OS=Saccharomyces cerevisiae GN=YFL054C PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.109e-11
Identity = 69/214 (32.24%), Postives = 89/214 (41.59%), Query Frame = 3
Query:  249 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQG------IAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKG--------FMGAGQYGRLAGGANVVAHG---YTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPI---LAPLPIGFAVFLVHLATIPITGTGINPARSLGAXI 830
            R   AEF+ T       VL + GV  +     T G  G       AW  G M+ V  Y   GISGGHINPAVT+ + + RK    +   Y+V Q +GA  G  +  G        F G       A GA +        T  +    E IG  +LV  + +  D      DS+ P    +  L IGF V  + +A    T   INPAR LG  I
Sbjct:  348 REPFAEFLGTL------VLVIFGVGGNLQATVTKGSGGSYESLSFAWGFGCMLGV--YVAGGISGGHINPAVTISMAIFRKFPWKKVPVYIVAQIIGAYFGGAMAYGYFWSSITEFEGGPHIRTTATGACLFTDPKSYVTWRNAFFDEFIGASILVGCLMALLD------DSNAPPGNGMTALIIGFLVAAIGMALGYQTSFTINPARDLGPRI 547          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: NIP51_ARATH (Probable aquaporin NIP5-1 OS=Arabidopsis thaliana GN=NIP5-1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.109e-11
Identity = 51/191 (26.70%), Postives = 87/191 (45.55%), Query Frame = 3
Query:  261 AEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAXI 830
            AEF+ TF+ ++ +     G + +        + G A   G  + +++  T  ISG H+NP++T+     R         Y+  Q   +IC +  +KG      +  ++GG  + +   + G     E I TF+L++ V + ATD +       V  LA + +G  V L  L   P TG  +NP R+LG  +
Sbjct:   82 AEFVGTFILIFTATA---GPIVNQKYDGAETLIGNAACAGLAVMIIILSTGHISGAHLNPSLTIAFAALRHFPWAHVPAYIAAQVSASICASFALKGVF----HPFMSGGVTIPS--VSLGQAFALEFIITFILLFVVTAVATDTRA------VGELAGIAVGATVMLNILVAGPSTGGSMNPVRTLGPAV 257          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: NIP31_MAIZE (Aquaporin NIP3-1 OS=Zea mays GN=NIP3-1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.109e-11
Identity = 54/191 (28.27%), Postives = 86/191 (45.03%), Query Frame = 3
Query:  261 AEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAXI 830
            AEF+ TF+ ++ +    +   K     S  G    A   G  +  ++  T  ISG H+NP++T+     R     +   Y+ +Q L ++C A  +KG      +  L+GG  V     +       E I +F L++ V + ATD +       V  LA + +G AV L  L   P TG  +NP R+LG  +
Sbjct:   78 AEFVGTFILIFFATAAPIVNQKYGGAISPFGNAACA---GLAVATVILSTGHISGAHLNPSLTIAFAALRHFPWLQVPAYVAVQALASVCAAFALKGVF----HPFLSGGVTVPDATVSTAQAFFTEFIISFNLLFVVTAVATDTRA------VGELAGIAVGAAVTLNILVAGPTTGGSMNPVRTLGPAV 255          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: NIP33_ORYSJ (Aquaporin NIP3-3 OS=Oryza sativa subsp. japonica GN=NIP3-3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.047e-11
Identity = 58/191 (30.37%), Postives = 90/191 (47.12%), Query Frame = 3
Query:  261 AEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAXI 830
            AEF  TF+ ++  + T+   +      S   + GIA + G  + VLV     ISG H+NPA+++ + +   L     L Y+  Q LGA+  +  VKG      Y  +  G   V +  T  +    E I TF L++ + + ATD       + V  L  + +G  V +  L   P TG  +NPAR++GA I
Sbjct:   72 AEFFGTFILIFTVLSTI---IMDEQHKSIETLLGIATSAGLAVTVLVLSLIHISGCHLNPAISIAMAVFGHLPSAHLLPYISSQILGAVAASFAVKGL-----YHPVNPGIVTVPNVGTV-EAFFVEFIITFFLLFIITALATD------PNAVKELIAVAVGATVMMNILVAGPSTGASMNPARTIGAAI 247          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: NIP12_ORYSJ (Aquaporin NIP1-2 OS=Oryza sativa subsp. japonica GN=NIP1-2 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.047e-11
Identity = 56/201 (27.86%), Postives = 89/201 (44.28%), Query Frame = 3
Query:  258 IAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANV---VAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAXIIYNKDRG 851
            +AE + T+  ++     V  VV  +T    V   GI    G ++ VLVY  + ISG H NPAVT+      +    +   Y+V Q LG+   +  ++   G G  G  A G ++        +       E + +F L++ V       R+  +     LA L +G  V +  L   P+TG  +NPARSLG  ++  +  G
Sbjct:   67 LAEILGTYFMIFAGCGAV--VVNQSTG-GAVTFPGICAVWGLVVMVLVYTVSHISGAHFNPAVTVAFATCGRFRWKQVPSYVVAQVLGSTMASLTLRVVFGGGGGG--ARGEHLFFGTTPAGSMAQAAALEFVISFFLMFVVSGVATDNRAIGE-----LAGLAVGATVAVNVLFAGPVTGASMNPARSLGPAMVAGRYGG 257          
The following BLAST results are available for this feature:
BLAST of CK935603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
NIP31_ORYSJ6.265e-1229.32Aquaporin NIP3-1 OS=Oryza sativa subsp. japonica G... [more]
GLPF_PSEAE1.069e-1126.17Glycerol uptake facilitator protein OS=Pseudomonas... [more]
AQPM_ARCFU1.823e-1131.53Probable aquaporin aqpM OS=Archaeoglobus fulgidus ... [more]
GLPF_STRR62.381e-1128.79Glycerol uptake facilitator protein OS=Streptococc... [more]
YFF4_YEAST3.109e-1132.24Uncharacterized membrane protein YFL054C OS=Saccha... [more]
NIP51_ARATH3.109e-1126.70Probable aquaporin NIP5-1 OS=Arabidopsis thaliana ... [more]
NIP31_MAIZE3.109e-1128.27Aquaporin NIP3-1 OS=Zea mays GN=NIP3-1 PE=2 SV=1[more]
NIP33_ORYSJ9.047e-1130.37Aquaporin NIP3-3 OS=Oryza sativa subsp. japonica G... [more]
NIP12_ORYSJ9.047e-1127.86Aquaporin NIP1-2 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_G12 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935603 ID=CK935603; Name=CK935603; organism=Citrus sinensis; type=EST; length=861bp
GGGGATTCTCATCACAACATCAAACGGCCACAAACAAAAAAGCAAGTGCT
TCTTATTGACTGTTTTGTGTTTTTGAGGGACTAGCAGAAATGGAAGGTAA
AGAAGAGGATGTTAGACTGGGAGCCAACAAGTTCGCCGAGAGGCAGCCGA
TTGGGACGGCGGCTCAGACCCAAGATGGGAAGGACTACGTTGAGCCCCCA
CCGGCGCCGCTCTTTGAGCCCGGCGAGCTCAAGTCTTGGTCGTTTTACAG
GGCCGGTATAGCCGAGTTCATAGCCACTTTTCTTTTCTTGTACATCTCCG
TACTGACAGTGATGGGCGTCGTCAAGTCCAATACCAAGTGCTCAACCGTC
GGCATTCAAGGGATTGCATGGGCCCTCGGTGGCATGATCTTCGTGCTCGT
TTACTGCACAGCTGGCATCTCGGGTGGTCATATCAACCCGGCGGTGACAC
TCGGCCTGTTCTTGGCGAGGAAGCTGTCGCTGACACGTGCACTTTTCTAC
ATGGTGATGCAGTGTCTGGGAGCCATCTGCGGTGCTGGCGTTGTAAAGGG
TTTCATGGGTGCCGGCCAATACGGGCGGCTCGCCGGCGGTGCCAACGTCG
TAGCTCATGGCTACACCAAGGGTGATGGTCTTGGTGCCGAGATTATTGGT
ACTTTTGTTCTTGTCTACACAGTTTTCTCTGCCACTGATGCCAAACGGAG
CGCCAGGGACTCTCATGTTCCTATTTTGGCTCCTCTGCCGATTGGGTTCG
CTGTGTTTTTGGTTCACTTGGCTACCATCCCAATTACCGGAACTGGCATC
AACCCAGCGAGGAGTCTTGGAGCTGNCATCATCTACAACAAGGACCGCGG
TTGGGATNNNN
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