CK935603

Overview
NameCK935603
Unique NameCK935603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10242 contig Csv1_Contig10242:1..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 4.775e-28
Identity = 77/198 (38.89%), Postives = 112/198 (56.57%), Query Frame = 3
Query:  240 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAXII 833
            +F++A  AEF+AT +F+ + V + +    S      V +  I+   G  I  +V C   ISGGHINPAVT+ +   RK+S+ +++FY++ QCLGAI GAG++         G L  G   V    T G GL  E+I TF LV+T+F++ D+KR+     +     L IGF+V + HL  I  TG  +NPARS G  +I
Sbjct:   33 AFWKAVSAEFLATLIFVLLGVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIIAQCLGAIIGAGILYLVTPPSVVGGL--GVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSI----ALAIGFSVAIGHLFAINYTGASMNPARSFGPAVI 223          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.236e-28
Identity = 81/206 (39.32%), Postives = 115/206 (55.83%), Query Frame = 3
Query:  240 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLG-AXIIYNKDRGW 854
            +F++A  AEF+A  +F+ +SV + +    S      V +  I+   G  I  +V C   ISGGHINPAVT+ +   RK+S+ +++FY+  QCLGAI GAG++         G L  G   V    T G GL  E+I TF LV+T+F++ D+KR+     V     L IGF+V + HL  I  TG  +NPARS G A I+ N +  W
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGL--GVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSV----ALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHW 231          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.145e-28
Identity = 80/206 (38.83%), Postives = 115/206 (55.83%), Query Frame = 3
Query:  240 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLG-AXIIYNKDRGW 854
            +F++A  AEF+A  +F+ +SV + +    S      V +  I+   G  I  +V C   ISGGHINPAVT+ +   RK+S+ +++FY+  QCLGAI GAG++         G L  G   V    T G GL  E+I TF LV+T+F++ D+KR+     +     L IGF+V + HL  I  TG  +NPARS G A I+ N +  W
Sbjct:   36 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPNVVGGL--GVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSI----ALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHW 234          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.389e-27
Identity = 79/206 (38.35%), Postives = 116/206 (56.31%), Query Frame = 3
Query:  240 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLG-AXIIYNKDRGW 854
            +F++A  AEF+A  +F+ +S+ + +       K   V +  I+   G  I  +V C   ISGGHINPAVT+ +   RK+S+ +++FY+  QCLGAI GAG++         G L  G  +V    T G GL  E+I TF LV+T+F++ D+KR+     +     L IGF+V + HL  I  TG  +NPARS G A I+ N +  W
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSLGSTINW-GGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGL--GVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSI----ALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHW 231          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.370e-27
Identity = 81/207 (39.13%), Postives = 116/207 (56.04%), Query Frame = 3
Query:  240 SFYRAGIAEFIATFLFLYISV-LTVMGVVKSNTKCSTVGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLG-AXIIYNKDRGW 854
            +F++A  AEF+A  +F+ +S+  T+    K N     V +  I+   G  I  +V C   ISGGHINPAVT+ +   RK+S+ +++FY+  QCLGAI GAG++         G L  G   V    T G GL  E+I TF LV+T+F++ D+KR+     +     L IGF+V + HL  I  TG  +NPARS G A I+ N +  W
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSLGSTINWGGKENPL--PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGL--GVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSI----ALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHW 231          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: AQP5_HUMAN (Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.042e-27
Identity = 76/207 (36.71%), Postives = 115/207 (55.56%), Query Frame = 3
Query:  225 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAP-LPIGFAVFLVHLATIPITGTGINPARSLGAXIIYNK 842
            E+ S +F +A  AEF+AT +F++  + + +         +   I  IA A G  I  L      +SGGHINPA+TL L +  ++SL RA FY+  Q +GAI GAG++ G       G LA   N + +  T+G  +  E+I TF L   +F++TD++R++     P+ +P L IG +V L HL  I  TG  +NPARS G  ++ N+
Sbjct:    4 EVCSVAFLKAVFAEFLATLIFVFFGLGSAL-----KWPSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARGNLA--VNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNR 198          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: AQP5_MOUSE (Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.279e-27
Identity = 75/207 (36.23%), Postives = 116/207 (56.04%), Query Frame = 3
Query:  225 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAP-LPIGFAVFLVHLATIPITGTGINPARSLGAXIIYNK 842
            E+ S +F++A  AEF+AT +F++  + + +         +   I  I+ A G  I  L      +SGGHINPA+TL L +  ++SL RA+FY+  Q +GAI GAG++         G LA   N +++  T G  +  E+I TF L   +FS+TD++R++     P+ +P L IG +V L HL  I  TG  +NPARS G  ++ N+
Sbjct:    4 EVCSVAFFKAVFAEFLATLIFVFFGLGSAL-----KWPSALPTILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAIFYVAAQLVGAIAGAGILYWLAPGNARGNLA--VNALSNNTTPGKAVVVELILTFQLALCIFSSTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNR 198          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 6.895e-27
Identity = 81/204 (39.71%), Postives = 111/204 (54.41%), Query Frame = 3
Query:  225 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKS-NTKCSTVGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAXII 833
            EL+S SF+RA +AEF+ + L+      T++G+  S        G+ G A A G     LV     +SGGHINPA+TL   LA +LSL RAL Y++ Q LGA+ GAGV+ G   A   G L  G + +      G G   E++ T   +  VF++ D +   R    P  A LP+GF++ L HL  IP TG G+NPARS    +I
Sbjct:    3 ELRSSSFWRAILAEFLGSLLY------TLLGLGASLRWAPGPHGVLGSALAFGLAQATLVQALGHVSGGHINPAITLAFLLASQLSLPRALGYLLAQLLGALAGAGVLYGVTPAAVRGTL--GLSALHPSVGPGQGTVVELLLTAQFILCVFASFDDRHDGR----PGSAALPVGFSLALGHLFGIPFTGAGMNPARSFAPAVI 194          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: AQP5_RAT (Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.176e-26
Identity = 75/207 (36.23%), Postives = 115/207 (55.56%), Query Frame = 3
Query:  225 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAP-LPIGFAVFLVHLATIPITGTGINPARSLGAXIIYNK 842
            E+ S +F++A  AEF+AT +F++  + + +         +   I  I+ A G  I  L      +SGGHINPA+TL L +  ++SL RA+FY+  Q +GAI GAG++         G LA   N + +  T G  +  E+I TF L   +FS+TD++R++     P+ +P L IG +V L HL  I  TG  +NPARS G  ++ N+
Sbjct:    4 EVCSLAFFKAVFAEFLATLIFVFFGLGSAL-----KWPSALPTILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAVFYVAAQLVGAIAGAGILYWLAPLNARGNLA--VNALNNNTTPGKAMVVELILTFQLALCIFSSTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNR 198          
BLAST of CK935603 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 7.623e-26
Identity = 76/206 (36.89%), Postives = 115/206 (55.83%), Query Frame = 3
Query:  240 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWALGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLG-AXIIYNKDRGW 854
            +F++A  AEF+A  +F+ +S+ + +    +  K   V +  I+   G  I  +V C   ISGGHINPAVT+ +   R++S+ +++FY+  QCLGAI GAG++         G L  G   V    + G GL  E+I TF LV+T+F++ D+KR+     +     L IG +V + HL  I  TG  +NPARS G A I+ N +  W
Sbjct:   33 TFWKAVTAEFLAMLIFVLLSLGSTINWGGAE-KPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRRISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGL--GVTTVHGNLSAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSI----ALAIGISVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHW 231          
The following BLAST results are available for this feature:
BLAST of CK935603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
AQP4_MOUSE4.775e-2838.89Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]
AQP4_RAT6.236e-2839.32Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
AQP4_NOTAL8.145e-2838.83Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
AQP4_HUMAN1.389e-2738.35Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
AQP4_DIPME2.370e-2739.13Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
AQP5_HUMAN4.042e-2736.71Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1[more]
AQP5_MOUSE5.279e-2736.23Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1[more]
MIP_CHICK6.895e-2739.71Lens fiber major intrinsic protein OS=Gallus gallu... [more]
AQP5_RAT1.176e-2636.23Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1[more]
AQP4_BOVIN7.623e-2636.89Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_G12 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935603 ID=CK935603; Name=CK935603; organism=Citrus sinensis; type=EST; length=861bp
GGGGATTCTCATCACAACATCAAACGGCCACAAACAAAAAAGCAAGTGCT
TCTTATTGACTGTTTTGTGTTTTTGAGGGACTAGCAGAAATGGAAGGTAA
AGAAGAGGATGTTAGACTGGGAGCCAACAAGTTCGCCGAGAGGCAGCCGA
TTGGGACGGCGGCTCAGACCCAAGATGGGAAGGACTACGTTGAGCCCCCA
CCGGCGCCGCTCTTTGAGCCCGGCGAGCTCAAGTCTTGGTCGTTTTACAG
GGCCGGTATAGCCGAGTTCATAGCCACTTTTCTTTTCTTGTACATCTCCG
TACTGACAGTGATGGGCGTCGTCAAGTCCAATACCAAGTGCTCAACCGTC
GGCATTCAAGGGATTGCATGGGCCCTCGGTGGCATGATCTTCGTGCTCGT
TTACTGCACAGCTGGCATCTCGGGTGGTCATATCAACCCGGCGGTGACAC
TCGGCCTGTTCTTGGCGAGGAAGCTGTCGCTGACACGTGCACTTTTCTAC
ATGGTGATGCAGTGTCTGGGAGCCATCTGCGGTGCTGGCGTTGTAAAGGG
TTTCATGGGTGCCGGCCAATACGGGCGGCTCGCCGGCGGTGCCAACGTCG
TAGCTCATGGCTACACCAAGGGTGATGGTCTTGGTGCCGAGATTATTGGT
ACTTTTGTTCTTGTCTACACAGTTTTCTCTGCCACTGATGCCAAACGGAG
CGCCAGGGACTCTCATGTTCCTATTTTGGCTCCTCTGCCGATTGGGTTCG
CTGTGTTTTTGGTTCACTTGGCTACCATCCCAATTACCGGAACTGGCATC
AACCCAGCGAGGAGTCTTGGAGCTGNCATCATCTACAACAAGGACCGCGG
TTGGGATNNNN
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