CK935611

Overview
NameCK935611
Unique NameCK935611
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9253 contig Csv1_Contig9253:1..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935611 vs. ExPASy Swiss-Prot
Match: THS2_ARAHY (Putative stilbene synthase 2 (Fragment) OS=Arachis hypogaea PE=5 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 7.607e-77
Identity = 142/200 (71.00%), Postives = 164/200 (82.00%), Query Frame = 2
Query:  284 LKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLIS 883
            LKENPNMCAY APSLDAR+D+++ EVP++GKEAATKAIKEWGQP SKITHLIFCTTSGV +PG DY+L  L+GL PSVKR+MMY QGCFAGGTVLRLAKDLAENNK ARVL+VCSE TAVTFRGP++T +DSLVGQALF            P   VE PL+++VST Q ++P+S GAI G LREVGLTF+L K VP +IS
Sbjct:    1 LKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQPMSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAENNKDARVLIVCSENTAVTFRGPSETDMDSLVGQALFADGAAAIIIGSDPVPEVENPLFEIVSTDQKLVPNSHGAIGGLLREVGLTFYLNKSVPDIIS 200          
BLAST of CK935611 vs. ExPASy Swiss-Prot
Match: CHS6_MEDSA (Chalcone synthase 6-4 (Fragment) OS=Medicago sativa GN=CHS6-4 PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.695e-76
Identity = 138/172 (80.23%), Postives = 152/172 (88.37%), Query Frame = 2
Query:  368 LGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLIS 883
            LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALF            P   +E+P++++V T+QTI PDS+GAIDGHLRE GLTFHLLKDVPG++S
Sbjct:    1 LGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPIPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVS 172          
BLAST of CK935611 vs. ExPASy Swiss-Prot
Match: CHS7_MEDSA (Chalcone synthase (Fragment) OS=Medicago sativa GN=CHSII PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.066e-62
Identity = 118/153 (77.12%), Postives = 132/153 (86.27%), Query Frame = 2
Query:  425 ITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLIS 883
            ITHLI CTTS VDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALF            P   +E+P++++V T+QTI PDS+GAIDGHLRE GLTFHLLKDVPG++S
Sbjct:    1 ITHLIVCTTS-VDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVS 152          
BLAST of CK935611 vs. ExPASy Swiss-Prot
Match: CHSY_MALDO (Chalcone synthase (Fragment) OS=Malus domestica GN=CHS PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.710e-49
Identity = 97/119 (81.51%), Postives = 103/119 (86.55%), Query Frame = 2
Query:  527 MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLIS 883
            MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGP+DTHLDSLVGQALF            P   VE+PL++LVS +QT+LPDSDGAIDGHLREVGLTFHLLKDVPGLIS
Sbjct:    1 MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAVIIGADPVPEVEKPLFELVSAAQTVLPDSDGAIDGHLREVGLTFHLLKDVPGLIS 119          
BLAST of CK935611 vs. ExPASy Swiss-Prot
Match: PKS1_DICDI (Probable polyketide synthase 1 OS=Dictyostelium discoideum GN=stlA PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.324e-23
Identity = 76/292 (26.03%), Postives = 141/292 (48.29%), Query Frame = 2
Query:    5 TLTKHEPQAYSLRVQLEMATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLI 880
            ++ +H+ Q   ++V ++       R + +++  + VL IG + P   ++Q    D        +   E  EK KR+ ++S IK R++ + +    EN     ++    D       V VP L ++A  +A+K+WG  K  ITH++  T++G+ +P  +++L  L+GL   V+R  +   GC AG + LR A  LA+ +   R+LVVC+E+ ++ F        D +V  ++F            P    E PLY+++ +     P+++ A+   L + G    L   +P +I
Sbjct: 2755 SVQQHQKQQQKVQV-IQQQQQPLSRLSYKSNNNSFVLGIGISVPGEPISQQSLKDSISNDFSDK--AETNEKVKRIFEQSQIKTRHL-VRDYTKPENSIKFRHLETITDVNNQFKKV-VPDLAQQACLRALKDWGGDKGDITHIVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLHFSNTDGG--DQMVASSIFADGSAAYIIGCNPRIE-ETPLYEVMCSINRSFPNTENAMVWDLEKEGWNLGLDASIPIVI 3038          
The following BLAST results are available for this feature:
BLAST of CK935611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
THS2_ARAHY7.607e-7771.00Putative stilbene synthase 2 (Fragment) OS=Arachis... [more]
CHS6_MEDSA1.695e-7680.23Chalcone synthase 6-4 (Fragment) OS=Medicago sativ... [more]
CHS7_MEDSA1.066e-6277.12Chalcone synthase (Fragment) OS=Medicago sativa GN... [more]
CHSY_MALDO6.710e-4981.51Chalcone synthase (Fragment) OS=Malus domestica GN... [more]
PKS1_DICDI6.324e-2326.03Probable polyketide synthase 1 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_G03 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935611 ID=CK935611; Name=CK935611; organism=Citrus sinensis; type=EST; length=883bp
GGGGACACTCACCAAGCACGAGCCACAAGCATATTCATTAAGGGTTCAAC
TTGAAATGGCAACCGTTCAAGAGATCAGAAACGCTCAGCGTGCCGACGGC
CCGGCCACCGTCCTCGCCATCGGTACGGCCACGCCTGCCCACAGTGTCAA
CCAGGCTGATTATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCATA
TGACGGAGCTTAAAGAGAAGTTCAAGCGCATGTGTGACAAGTCGATGATT
AAGAAGCGTTACATGTACTTAACGGAAGAGATTTTGAAGGAAAACCCCAA
CATGTGCGCTTACATGGCTCCATCACTCGACGCACGTCAAGACATTGTGG
TGGTCGAAGTGCCGAAGCTCGGGAAAGAAGCTGCTACAAAGGCCATCAAA
GAATGGGGCCAGCCCAAGTCTAAGATCACCCACCTCATCTTCTGCACCAC
CTCCGGCGTCGACATGCCCGGCGCCGACTACCAGCTCACCAAACTGATCG
GCCTGCGCCCCTCCGTCAAGCGCTTCATGATGTACCAACAAGGATGTTTC
GCCGGCGGCACTGTTCTTCGCCTCGCTAAAGACTTGGCTGAGAACAACAA
GGGCGCTCGCGTTCTTGTTGTCTGTTCGGAGATCACGGCAGTCACTTTCC
GCGGCCCTGCCGATACTCATCTTGATTCTCTTGTGGGCCAGGCTTTGTTC
GGTGATGGTGCTGCTGCTGTGATCGTGGGTGCCGATCCTGACACGTCGGT
CGAGCGTCCGTTGTATCAGCTCGTGTCGACTTCGCAGACGATCCTCCCTG
ACTCTGACGGTGCAATTGACGGACACTTGCGCGAAGTCGGTCTCACTTTC
CATTTGCTTAAAGACGTCCCCGGCTTGATCTCA
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