CK935632

Overview
NameCK935632
Unique NameCK935632
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935632_ssr27 microsatellite CK935632_ssr27:27..36. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4526 contig Csv1_Contig4526:14..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935632 vs. ExPASy Swiss-Prot
Match: TPIC_SECCE (Triosephosphate isomerase, chloroplastic OS=Secale cereale PE=1 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 8.856e-77
Identity = 145/249 (58.23%), Postives = 174/249 (69.88%), Query Frame = 2
Query:   59 KFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRGAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAELK 802
            KFFVGGNWKCNGT E + K+VS LN                   ++  VKSSL     V+AQN W+ KGGAFTGEISAE LV++   WVILGHSERR ++ E +EF+G K AYALSQ LKV+AC+GE LE+R AG T +V   Q KA AD ++ W+N+V+AYEPVWAIGTGKVA+P QAQEVH  +R WL  N S ++A+  RIIYGGSVN ANC ELA + D+DGFLVGGASLK P+F  I  S   K
Sbjct:   48 KFFVGGNWKCNGTKESISKLVSDLNAATLESDVDVVVAPPFI--YIDQVKSSLTDRIEVSAQNTWIGKGGAFTGEISAEQLVDIGCQWVILGHSERRHVIGEDDEFIGKKAAYALSQNLKVMACIGELLEEREAGKTFDVCFKQMKAFADNITDWTNVVIAYEPVWAIGTGKVASPEQAQEVHAAVRDWLKTNVSADVASTVRIIYGGSVNAANCAELAKKEDIDGFLVGGASLKGPDFATICNSVTSK 294          
BLAST of CK935632 vs. ExPASy Swiss-Prot
Match: TPIC_ARATH (Triosephosphate isomerase, chloroplastic OS=Arabidopsis thaliana GN=TIM PE=1 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 2.577e-76
Identity = 147/249 (59.04%), Postives = 172/249 (69.08%), Query Frame = 2
Query:   59 KFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRGAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAELK 802
            KFFVGGNWKCNGT + + K++S LN                   ++  VKSSL     ++ QN WV KGGAFTGEIS E L +L   WVILGHSERR ++ E +EF+G K AYALS+GL VIAC+GE LE+R AG T +V  AQ KA AD V SW NIV+AYEPVWAIGTGKVA+P QAQEVH  +R WL  N S E+A+ TRIIYGGSVNG N  ELA + D+DGFLVGGASLK PEF  I+ S   K
Sbjct:   65 KFFVGGNWKCNGTKDSIAKLISDLNSATLEADVDVVVSPPFV--YIDQVKSSLTDRIDISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNSVTSK 311          
BLAST of CK935632 vs. ExPASy Swiss-Prot
Match: TPIS_CULTA (Triosephosphate isomerase OS=Culex tarsalis GN=Tpi PE=1 SV=2)

HSP 1 Score: 283.878 bits (725), Expect = 7.497e-76
Identity = 145/249 (58.23%), Postives = 172/249 (69.08%), Query Frame = 2
Query:   50 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRGAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 796
            MGRKF VGGNWK NG    +  +  VL  G                 +L L +S L     VAAQNC+    GAFTGEIS  ML +L I WVILGHSERR I  E +E + DKVA+AL++GLKVIAC+GETL++R AG T  V   QTKAIAD+V  WSN+V+AYEPVWAIGTGK A+P QAQEVH  LRKW   N S +++AA RI YGGSV  ANC+ELAA+PD+DGFLVGGASLKPEFI I+ + +
Sbjct:    1 MGRKFCVGGNWKMNGDKASIADLCKVLTTGPLNADTEVVVGCPAP--YLTLARSQLPDSVCVAAQNCYKVPKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESDELIADKVAHALAEGLKVIACIGETLQEREAGQTEAVCFRQTKAIADKVKDWSNVVIAYEPVWAIGTGKTASPEQAQEVHAALRKWFTENVSADVSAAIRIQYGGSVTAANCRELAAKPDIDGFLVGGASLKPEFIQIVNARQ 247          
BLAST of CK935632 vs. ExPASy Swiss-Prot
Match: TPIC_FRAAN (Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa GN=TPI PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 6.346e-75
Identity = 144/249 (57.83%), Postives = 173/249 (69.48%), Query Frame = 2
Query:   59 KFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRGAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAELK 802
            KFFVGGNWKCNGT + + K+VS LN  +                +L  VKSSL     ++ QN WV KGGAFTGEIS E L ++   WVILGHSERR ++ E ++F+G K AYAL++GL VIAC+GE LE+R AG T +V   Q KA AD V SW NIV+AYEPVWAIGTGKVA+P QAQEVH  +R+WL  N S E+A+ TRIIYGGSVNG N  ELA + D+DGFLVGGASLK PEF  I+ +   K
Sbjct:   64 KFFVGGNWKCNGTKDLISKLVSDLNSAKLEPDVDVVVAPPFL--YLDQVKSSLTDRIEISGQNSWVAKGGAFTGEISVEQLKDIGRKWVILGHSERRHVIGEDDQFIGKKAAYALNEGLGVIACIGEKLEEREAGKTFDVCYEQLKAFADAVPSWENIVVAYEPVWAIGTGKVASPQQAQEVHVAVREWLKKNVSAEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNAVTSK 310          
BLAST of CK935632 vs. ExPASy Swiss-Prot
Match: TPIS_RABIT (Triosephosphate isomerase OS=Oryctolagus cuniculus GN=TPI1 PE=1 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.847e-74
Identity = 140/247 (56.68%), Postives = 172/247 (69.64%), Query Frame = 2
Query:   56 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRGAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 796
            RKFFVGGNWK NG  + + ++++ LN  +                ++   +  L P   VAAQNC+    GAFTGEIS  M+ +    WV+LGHSERR +  E +E +G KVA+ALS+GL VIAC+GE L++R AG T +VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N S  +A +TRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII + +
Sbjct:    4 RKFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTA--YIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ 248          
BLAST of CK935632 vs. ExPASy Swiss-Prot
Match: TPIS_PONAB (Triosephosphate isomerase OS=Pongo abelii GN=TPI1 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 4.114e-74
Identity = 139/247 (56.28%), Postives = 171/247 (69.23%), Query Frame = 2
Query:   56 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRGAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 796
            RKFFVGGNWK NG  + + +++  LN  +                ++   +  L P   VAAQNC+    GAFTGEIS  M+ +    WV+LGHSERR +  E +E +G KVA+AL++GL VIAC+GE L++R AG T +VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N S  +A +TRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII + +
Sbjct:    5 RKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTA--YIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDYGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ 249          
BLAST of CK935632 vs. ExPASy Swiss-Prot
Match: TPIS_PANTR (Triosephosphate isomerase OS=Pan troglodytes GN=TPI1 PE=2 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 4.114e-74
Identity = 139/247 (56.28%), Postives = 171/247 (69.23%), Query Frame = 2
Query:   56 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRGAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 796
            RKFFVGGNWK NG  + + +++  LN  +                ++   +  L P   VAAQNC+    GAFTGEIS  M+ +    WV+LGHSERR +  E +E +G KVA+AL++GL VIAC+GE L++R AG T +VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N S  +A +TRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII + +
Sbjct:    5 RKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTA--YIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ 249          
BLAST of CK935632 vs. ExPASy Swiss-Prot
Match: TPIS_MACMU (Triosephosphate isomerase OS=Macaca mulatta GN=TPI1 PE=3 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 4.114e-74
Identity = 139/247 (56.28%), Postives = 171/247 (69.23%), Query Frame = 2
Query:   56 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRGAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 796
            RKFFVGGNWK NG  + + +++  LN  +                ++   +  L P   VAAQNC+    GAFTGEIS  M+ +    WV+LGHSERR +  E +E +G KVA+AL++GL VIAC+GE L++R AG T +VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N S  +A +TRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII + +
Sbjct:    5 RKFFVGGNWKMNGRKQNLGELIGTLNAAKVPADTEVVCAPPTA--YIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ 249          
BLAST of CK935632 vs. ExPASy Swiss-Prot
Match: TPIS_MACFA (Triosephosphate isomerase OS=Macaca fascicularis GN=TPI1 PE=2 SV=3)

HSP 1 Score: 278.1 bits (710), Expect = 4.114e-74
Identity = 139/247 (56.28%), Postives = 171/247 (69.23%), Query Frame = 2
Query:   56 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRGAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 796
            RKFFVGGNWK NG  + + +++  LN  +                ++   +  L P   VAAQNC+    GAFTGEIS  M+ +    WV+LGHSERR +  E +E +G KVA+AL++GL VIAC+GE L++R AG T +VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N S  +A +TRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII + +
Sbjct:    5 RKFFVGGNWKMNGRKQNLGELIGTLNAAKVPADTEVVCAPPTA--YIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ 249          
BLAST of CK935632 vs. ExPASy Swiss-Prot
Match: TPIS_HUMAN (Triosephosphate isomerase OS=Homo sapiens GN=TPI1 PE=1 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 4.114e-74
Identity = 139/247 (56.28%), Postives = 171/247 (69.23%), Query Frame = 2
Query:   56 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRGAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 796
            RKFFVGGNWK NG  + + +++  LN  +                ++   +  L P   VAAQNC+    GAFTGEIS  M+ +    WV+LGHSERR +  E +E +G KVA+AL++GL VIAC+GE L++R AG T +VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N S  +A +TRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII + +
Sbjct:    5 RKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTA--YIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ 249          
The following BLAST results are available for this feature:
BLAST of CK935632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIC_SECCE8.856e-7758.23Triosephosphate isomerase, chloroplastic OS=Secale... [more]
TPIC_ARATH2.577e-7659.04Triosephosphate isomerase, chloroplastic OS=Arabid... [more]
TPIS_CULTA7.497e-7658.23Triosephosphate isomerase OS=Culex tarsalis GN=Tpi... [more]
TPIC_FRAAN6.346e-7557.83Triosephosphate isomerase, chloroplastic OS=Fragar... [more]
TPIS_RABIT1.847e-7456.68Triosephosphate isomerase OS=Oryctolagus cuniculus... [more]
TPIS_PONAB4.114e-7456.28Triosephosphate isomerase OS=Pongo abelii GN=TPI1 ... [more]
TPIS_PANTR4.114e-7456.28Triosephosphate isomerase OS=Pan troglodytes GN=TP... [more]
TPIS_MACMU4.114e-7456.28Triosephosphate isomerase OS=Macaca mulatta GN=TPI... [more]
TPIS_MACFA4.114e-7456.28Triosephosphate isomerase OS=Macaca fascicularis G... [more]
TPIS_HUMAN4.114e-7456.28Triosephosphate isomerase OS=Homo sapiens GN=TPI1 ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_E08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935632 ID=CK935632; Name=CK935632; organism=Citrus sinensis; type=EST; length=820bp
GGGAAACAAATAGAAAATAAAACATAACACACACACGCACTCGTCGAAAA
TGGGCAGGAAGTTCTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACT
GAAGAAGTGAAAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATC
TTCTGATGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGAC
TGGTGAAGAGTTCGTTGAGGCCTGGCTTTCATGTTGCGGCACAGAATTGC
TGGGTCAAGAAGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCT
CGTCAATTTGGAAATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGAC
TCATTTTGAATGAATTAAATGAGTTTGTTGGGGATAAGGTTGCATATGCA
CTTTCTCAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCA
GCGTGGAGCAGGATCTACTATGGAAGTTGTTGCTGCACAAACTAAAGCAA
TCGCAGATCGAGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCT
GTGTGGGCTATTGGAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGA
AGTACATTTTGAACTGAGGAAATGGCTTCTTGCAAACACCAGTCCTGAAA
TTGCTGCAGCAACACGGATCATCTACGGAGGATCCGTAAATGGTGCAAAC
TGCAAGGAATTGGCTGCACAGCCTGATGTTGACGGATTTTTGGTTGGTGG
TGCTTCGTTGAAGCCGGAGTTCATTGACATCATCAAATCTGCTGAGCTGA
AGTAAAATTCTTGAGCTTTA
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