CK935632

Overview
NameCK935632
Unique NameCK935632
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935632_ssr27 microsatellite CK935632_ssr27:27..36. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4526 contig Csv1_Contig4526:14..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935632 vs. ExPASy Swiss-Prot
Match: TPIS_CULPI (Triosephosphate isomerase (Fragment) OS=Culex pipiens GN=Tpi PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.202e-57
Identity = 110/179 (61.45%), Postives = 131/179 (73.18%), Query Frame = 2
Query:  191 FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRGAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPD 727
            +L L +S L     VAAQNC+    GAFTGEIS  ML +L I WVILGHSERR I  E  E + DK+ +AL++GLKVIAC+GETL++R A  T  V   QTKAIAD+V  WSN+V+AYEPVWAIGTGK ATP QAQEVH  LRKW   N S ++++A RI YGGSV  ANC+ELAA+PD
Sbjct:   28 YLSLARSQLPDTVGVAAQNCYKVAKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESGELIADKIVHALAEGLKVIACIGETLQEREAAKTEAVCFRQTKAIADKVKDWSNVVIAYEPVWAIGTGKTATPEQAQEVHAALRKWFTENVSADVSSAIRIQYGGSVTAANCRELAAKPD 206          
BLAST of CK935632 vs. ExPASy Swiss-Prot
Match: TPIS_TRYCR (Triosephosphate isomerase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.679e-57
Identity = 118/243 (48.56%), Postives = 155/243 (63.79%), Query Frame = 2
Query:   77 NWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRGAGSTMEVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 796
            NWKCNG+   +  ++  LN                    + + K+ L  P F +AAQN  + + GAFTGE+S ++L +  I WV+LGHSERRL   E NE V +KVA A + G  VI CVGET E+R AG T  VV  Q  A+A ++S  +WS +V+AYEPVWAIGTGKVATP QAQEVH  LR+W+ +    +IAA  RI+YGGSV   N + L    D++GFLVGGASLKPEF++II++ +
Sbjct:   12 NWKCNGSESLLVPLIETLNAATFDHDVQCVVAPTFLH--IPMTKARLTNPKFQIAAQNA-ITRSGAFTGEVSLQILKDYGISWVVLGHSERRLYYGETNEIVAEKVAQACAAGFHVIVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEAWSRVVIAYEPVWAIGTGKVATPQQAQEVHELLRRWVRSKLGTDIAAQLRILYGGSVTAKNARTLYQMRDINGFLVGGASLKPEFVEIIEATK 251          
BLAST of CK935632 vs. ExPASy Swiss-Prot
Match: TPIS_CANGA (Triosephosphate isomerase OS=Candida glabrata GN=TPI1 PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 7.794e-57
Identity = 117/248 (47.18%), Postives = 151/248 (60.89%), Query Frame = 2
Query:   50 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRGAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 790
            M R FFVGGN+K NGT + +K+IV  LN                   +L    S + +    V  QN + K  GA+TGE S + L ++   WVILGHSERR   +E ++ V +K  +AL QGL VI C+GETLE++ AG T++VV  Q  A+   V  W+N+V+AYEPVWAIGTG  AT   AQ++H  +R +L      + A  TRI+YGGS NGAN      + DVDGFLVGGASLKPEF+DII S
Sbjct:    1 MARTFFVGGNFKLNGTKKSIKEIVDRLNTASLPENVEVVICPPAT--YLDYTVSLVSKKQVTVGGQNTYTKASGAYTGENSVDQLKDVGAKWVILGHSERRTYFHEDDKIVAEKTKFALDQGLGVILCIGETLEEKKAGVTLKVVERQLDAVIAEVKDWTNVVIAYEPVWAIGTGLAATAEDAQDIHHSIRSYLAEKLGKDTAEKTRILYGGSANGANAGTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of CK935632 vs. ExPASy Swiss-Prot
Match: TPIS_HELVI (Triosephosphate isomerase (Fragment) OS=Heliothis virescens GN=Tpi PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.962e-56
Identity = 115/216 (53.24%), Postives = 144/216 (66.67%), Query Frame = 2
Query:   89 NGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRGAGSTMEVVAAQTKAIADRV-SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVD 733
            NG  ++V  IV  L +G                 +L  V+S +     VAAQNCW    GAFTGEIS  M+ ++   WVILGHSERR I  E ++ V +KVA+AL  GLKVIAC+GETLE+R AG T EVV  QTKA+   + ++W+N+VLAYEPVWAIGTGK A+P QAQ+VH  LR WL +N SP++AA+ RI YGGSV  AN KEL+A PD+D
Sbjct:    2 NGDKKQVTDIVETLKKGPLDPNVEVVIGVPAI--YLAYVQSIVPGTISVAAQNCWKVAKGAFTGEISPAMIKDIGANWVILGHSERRTIFGEKDDLVAEKVAHALENGLKVIACIGETLEEREAGKTEEVVFRQTKALLPAIGNNWANVVLAYEPVWAIGTGKTASPQQAQDVHASLRNWLSSNASPDVAASVRIQYGGSVTAANAKELSAFPDID 215          
BLAST of CK935632 vs. ExPASy Swiss-Prot
Match: TPIS_ANOME (Triosephosphate isomerase (Fragment) OS=Anopheles merus GN=Tpi PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.868e-56
Identity = 109/179 (60.89%), Postives = 130/179 (72.63%), Query Frame = 2
Query:  191 FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRGAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPD 727
            +L L +S L     VAAQNC+    GAFTGEIS  ML +L + WVILGHSERR I  E +E + +KVA+AL +GLKVIAC+GETL++R AG T  V   QTKAIA +V  WSN+V+AYEPVWAIGTGK ATP QAQEVH  LRKW   N S +++ A RI YGGSV  ANC+ELA +PD
Sbjct:   28 YLSLARSLLPETIGVAAQNCYKVAKGAFTGEISPAMLKDLGLGWVILGHSERRAIFGETDELIAEKVAHALGEGLKVIACIGETLQEREAGQTEAVCFRQTKAIAAQVKDWSNVVIAYEPVWAIGTGKTATPEQAQEVHAALRKWFTENVSADVSNAIRIQYGGSVTAANCRELAGKPD 206          
BLAST of CK935632 vs. ExPASy Swiss-Prot
Match: TPISL_HUMAN (Putative triosephosphate isomerase-like protein LOC286016 OS=Homo sapiens PE=1 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 4.277e-55
Identity = 117/247 (47.37%), Postives = 148/247 (59.92%), Query Frame = 2
Query:   56 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRGAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 796
            RKFFVG NWK NG  + + +++   N                   +  L +  L P   VA QNC+    GAFTGEIS  M+ +L + WV+                   KVA+AL++ L VIAC+GE L++R AG T +VV  QTK IAD V  WS ++LAY+PVWA GTGK ATP QAQEVH +LR WL +N S  +A +T IIYGGSV  A CKELA+QPDV  FL+ G SLKPEF+DII + +
Sbjct:    5 RKFFVGRNWKMNGRKKCLGELIGTQNAATVPADTKVICALATA--YNELARQKLAPKIAVAPQNCYKVTNGAFTGEISPGMVKDLGVTWVV-------------------KVAHALAERLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVILAYDPVWATGTGKTATPQQAQEVHKKLRGWLKSNISDAVAQSTGIIYGGSVTKATCKELASQPDVAAFLMSGVSLKPEFVDIINAKQ 230          
BLAST of CK935632 vs. ExPASy Swiss-Prot
Match: TPIS_DICDI (Triosephosphate isomerase OS=Dictyostelium discoideum GN=tpiA PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.625e-54
Identity = 117/248 (47.18%), Postives = 149/248 (60.08%), Query Frame = 2
Query:   56 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRGAGSTMEVVAAQTKAIADRV-SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSA 793
            R FFVGGN K NG+   ++ +   +NE                     L        F V +QNC+    GAFTGEISA MLV+L IP+VI+GHSERR + +E +E +  K  YA+S GL VI C+GE L  R + +T  +++ Q K  A      WS IV+AYEPVWAIGTG VATP +AQ+ H  +RKW+    S ++A  T I+YGGSVN  NC  L+ Q D+DGFLVGGASL   +FI IIKSA
Sbjct:    5 RTFFVGGNHKMNGSKSMLESLSKGMNESVENKENVDIFIAPSYPYLEFLSNKLDNKKFKVCSQNCYSVAKGAFTGEISANMLVDLGIPYVIIGHSERRNVFSESSELITKKTKYAISLGLTVILCLGELLADRKSNNTEHILSEQLKDFASFTPEEWSKIVIAYEPVWAIGTGAVATPQEAQDTHVFIRKWISEKVSEDVAKKTSIMYGGSVNADNCHNLSKQSDIDGFLVGGASLVASDFIAIIKSA 252          
BLAST of CK935632 vs. ExPASy Swiss-Prot
Match: TPIS_PLAFA (Triosephosphate isomerase OS=Plasmodium falciparum GN=TPI PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.620e-54
Identity = 111/248 (44.76%), Postives = 146/248 (58.87%), Query Frame = 2
Query:   50 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRGAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 793
            M RK+FV  NWKCNGT E +K + +  N                   +    +  L+  F    QN      G++TGE+SAE+  +L I +VI+GH ERR   +E +E V +K+  +L   LK + C GE+LEQR    T+EV+  Q KA  D + ++ N++LAYEP+WAIGTGK ATP QAQ VH E+RK +      + A   RI+YGGSVN  NC  L  Q D+DGFLVG ASLK  F+DIIKSA
Sbjct:    1 MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHY-DHTRKLLQSKFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILAYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLKESFVDIIKSA 247          
BLAST of CK935632 vs. ExPASy Swiss-Prot
Match: TPIS_PLAF7 (Triosephosphate isomerase OS=Plasmodium falciparum (isolate 3D7) GN=TPI PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.620e-54
Identity = 111/248 (44.76%), Postives = 146/248 (58.87%), Query Frame = 2
Query:   50 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRGAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 793
            M RK+FV  NWKCNGT E +K + +  N                   +    +  L+  F    QN      G++TGE+SAE+  +L I +VI+GH ERR   +E +E V +K+  +L   LK + C GE+LEQR    T+EV+  Q KA  D + ++ N++LAYEP+WAIGTGK ATP QAQ VH E+RK +      + A   RI+YGGSVN  NC  L  Q D+DGFLVG ASLK  F+DIIKSA
Sbjct:    1 MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHY-DHTRKLLQSKFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILAYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLKESFVDIIKSA 247          
BLAST of CK935632 vs. ExPASy Swiss-Prot
Match: TPI2_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.620e-54
Identity = 112/247 (45.34%), Postives = 154/247 (62.35%), Query Frame = 2
Query:   56 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRGAGSTMEVVAAQTKAIADRVSS----WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 784
            R+ F+GGN+KCNG+ + +K  V+ +   +                   +  ++ +    +AAQN +++  GA+TGE S EML+++ +  VI+GHSERR I+ E NE    K   AL +G+ VI C GETL++R A +TMEV  AQ +A+   +      W N+V+AYEPVW+IGTG VATP QA+EVH  LRKW       E A   RIIYGGS NG+NC++L   P++DGFLVGGASLKPEF  +I
Sbjct:    4 RRPFIGGNFKCNGSLDFIKSHVASIASYKIPESVDVVVAPSFVHLSTAIAANTSKC-LKIAAQNVYLEGNGAWTGETSVEMLLDMGLSHVIIGHSERRRIMGETNEQSAKKAKRALDKGMTVIFCTGETLDERKANNTMEVNIAQLEALKKEIGESKKLWENVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKWFAEKVCAEGAQHIRIIYGGSANGSNCEKLGQCPNIDGFLVGGASLKPEFTTMI 249          
The following BLAST results are available for this feature:
BLAST of CK935632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CULPI1.202e-5761.45Triosephosphate isomerase (Fragment) OS=Culex pipi... [more]
TPIS_TRYCR2.679e-5748.56Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]
TPIS_CANGA7.794e-5747.18Triosephosphate isomerase OS=Candida glabrata GN=T... [more]
TPIS_HELVI2.962e-5653.24Triosephosphate isomerase (Fragment) OS=Heliothis ... [more]
TPIS_ANOME3.868e-5660.89Triosephosphate isomerase (Fragment) OS=Anopheles ... [more]
TPISL_HUMAN4.277e-5547.37Putative triosephosphate isomerase-like protein LO... [more]
TPIS_DICDI1.625e-5447.18Triosephosphate isomerase OS=Dictyostelium discoid... [more]
TPIS_PLAFA3.620e-5444.76Triosephosphate isomerase OS=Plasmodium falciparum... [more]
TPIS_PLAF73.620e-5444.76Triosephosphate isomerase OS=Plasmodium falciparum... [more]
TPI2_GIALA3.620e-5445.34Triosephosphate isomerase OS=Giardia lamblia PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_E08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935632 ID=CK935632; Name=CK935632; organism=Citrus sinensis; type=EST; length=820bp
GGGAAACAAATAGAAAATAAAACATAACACACACACGCACTCGTCGAAAA
TGGGCAGGAAGTTCTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACT
GAAGAAGTGAAAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATC
TTCTGATGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGAC
TGGTGAAGAGTTCGTTGAGGCCTGGCTTTCATGTTGCGGCACAGAATTGC
TGGGTCAAGAAGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCT
CGTCAATTTGGAAATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGAC
TCATTTTGAATGAATTAAATGAGTTTGTTGGGGATAAGGTTGCATATGCA
CTTTCTCAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCA
GCGTGGAGCAGGATCTACTATGGAAGTTGTTGCTGCACAAACTAAAGCAA
TCGCAGATCGAGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCT
GTGTGGGCTATTGGAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGA
AGTACATTTTGAACTGAGGAAATGGCTTCTTGCAAACACCAGTCCTGAAA
TTGCTGCAGCAACACGGATCATCTACGGAGGATCCGTAAATGGTGCAAAC
TGCAAGGAATTGGCTGCACAGCCTGATGTTGACGGATTTTTGGTTGGTGG
TGCTTCGTTGAAGCCGGAGTTCATTGACATCATCAAATCTGCTGAGCTGA
AGTAAAATTCTTGAGCTTTA
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