CK935632

Overview
NameCK935632
Unique NameCK935632
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935632_ssr27 microsatellite CK935632_ssr27:27..36. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4526 contig Csv1_Contig4526:14..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935632 vs. ExPASy Swiss-Prot
Match: TPIS_CHLPD (Triosephosphate isomerase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=tpiA PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.801e-45
Identity = 114/253 (45.06%), Postives = 141/253 (55.73%), Query Frame = 2
Query:   56 RKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVA--AQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRGAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 793
            RK  V GNWK N T  E      ++ + L EG                 F  L +     G  +A  AQNC  +  GAFTGE+SA M+       VI GHSERR    E N  V  KV +ALS+GL+VI C GETLEQR  G T +VV AQ +     +   SNIV+AYEPVWAIGTGK AT  QA+EVH  +R  +      E A   RI YGGSV  +N KEL + P++DG L+GGASL   +F+ I+K+A
Sbjct:    2 RKKIVVGNWKMNKTVTESLVLAAEVTAALGEG------FTGCDVGIAPPFTALYEVGKLTGSRLALVAQNCHFEPDGAFTGEVSASMVREAGCSAVIAGHSERRHCFGETNAIVNRKVKHALSEGLQVIMCAGETLEQREGGVTGDVVTAQVREGLLGIDDISNIVIAYEPVWAIGTGKTATSEQAEEVHLLIRNTVSDLFGEEAAGRLRIQYGGSVKPSNAKELFSMPNIDGGLIGGASLNAADFVAIVKAA 248          
BLAST of CK935632 vs. ExPASy Swiss-Prot
Match: TPIS_PORGI (Triosephosphate isomerase OS=Porphyromonas gingivalis GN=tpiA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.844e-45
Identity = 106/249 (42.57%), Postives = 145/249 (58.23%), Query Frame = 2
Query:   56 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRGAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 790
            RK  V GNWK N T +E   +   L+                    L  + +++      VAA+NC  K+ GA+TGE+SA M+ +    +VI+GHSERR   +E +  + +KV  ALS GL  I CVGE LE+R AG   EVVA Q +     +  + ++ ++LAYEPVWAIGTGK AT  QAQE+H  +RK + A    E+A    I+YGGS N AN KEL ++ DVDG L+GGASL   +F+ II++
Sbjct:    2 RKNIVAGNWKMNKTLQEGLALAKELDAALKGRTINCDVIIGTPFIHLASIAAAIDTTRIGVAAENCADKESGAYTGEVSAAMVASTGARYVIIGHSERRAYYHETSPILMEKVKLALSNGLTPIFCVGEVLEEREAGKHFEVVARQVEEALFTLDQTDFAKLILAYEPVWAIGTGKTATADQAQEMHAHIRKSIAAKYGKEVANGCSILYGGSCNAANAKELFSRADVDGGLIGGASLSVDKFLPIIEA 250          
BLAST of CK935632 vs. ExPASy Swiss-Prot
Match: TPIS_PORG3 (Triosephosphate isomerase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=tpiA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.844e-45
Identity = 106/249 (42.57%), Postives = 145/249 (58.23%), Query Frame = 2
Query:   56 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRGAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 790
            RK  V GNWK N T +E   +   L+                    L  + +++      VAA+NC  K+ GA+TGE+SA M+ +    +VI+GHSERR   +E +  + +KV  ALS GL  I CVGE LE+R AG   EVVA Q +     +  + ++ ++LAYEPVWAIGTGK AT  QAQE+H  +RK + A    E+A    I+YGGS N AN KEL ++ DVDG L+GGASL   +F+ II++
Sbjct:    2 RKNIVAGNWKMNKTLQEGLALAKELDAALKGRTISCDVIIGTPFIHLASIAAAIDTTRIGVAAENCADKESGAYTGEVSAAMVASTGARYVIIGHSERRAYYHETSPILMEKVKLALSNGLTPIFCVGEVLEEREAGKHFEVVARQVEEALFTLDQTDFAKLILAYEPVWAIGTGKTATADQAQEMHAHIRKSIAAKYGKEVANGCSILYGGSCNAANAKELFSRADVDGGLIGGASLSVDKFLPIIEA 250          
BLAST of CK935632 vs. ExPASy Swiss-Prot
Match: TPIS_BACV8 (Triosephosphate isomerase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=tpiA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.844e-45
Identity = 106/238 (44.54%), Postives = 134/238 (56.30%), Query Frame = 2
Query:   56 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRGAGSTMEVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 763
            RK  V GNWK N   +E   +   LNE                   L  V   + +    V A+NC  K  GA+TGE+SAEM+ +    +VILGHSERR   +E  E + +KV  AL+  LK I C+GE LE+R A    EVVAAQ  ++       +S I+LAYEPVWAIGTGK AT  QAQE+H  +R  +      E+A  T I+YGGS   +N KEL A PDVDG L+GGA+LK
Sbjct:    2 RKNIVAGNWKMNKNLQEGIALAKELNEALAADKPNCDVVICTPFIHLASVTPIVDKAVIGVGAENCADKVSGAYTGEVSAEMVASTGAEYVILGHSERRAYYHETVEILEEKVKLALANNLKPIFCIGEVLEEREANKQNEVVAAQLASVFSLSAEDFSKIILAYEPVWAIGTGKTATAEQAQEIHAFIRSLIADKYGKEVADNTSILYGGSCKPSNAKELFANPDVDGGLIGGAALK 239          
BLAST of CK935632 vs. ExPASy Swiss-Prot
Match: TPIS_BACTN (Triosephosphate isomerase OS=Bacteroides thetaiotaomicron GN=tpiA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.844e-45
Identity = 106/238 (44.54%), Postives = 134/238 (56.30%), Query Frame = 2
Query:   56 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG-FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRGAGSTMEVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 763
            RK  V GNWK N T +E   +   LNE                   L  V   +      V A+NC  K  GA+TGE+SAEM+ +    +VILGHSERR    E    + +KV  AL+ GL  I C+GE LE+R A    EVVAAQ +++       +S I+LAYEPVWAIGTGK A+P QAQE+H  +R  +      EIA  T I+YGGS   +N KEL + PDVDG L+GGA+LK
Sbjct:    2 RKNIVAGNWKMNKTLQEGIALAKELNEALANEKPNCDVIICTPFIHLASVTPLVDAAKIGVGAENCADKASGAYTGEVSAEMVASTGAKYVILGHSERRAYYGETVAILEEKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQMESVFSLSAEDFSKIILAYEPVWAIGTGKTASPEQAQEIHAFIRSIVADKYGKEIADNTSILYGGSCKPSNAKELFSNPDVDGGLIGGAALK 239          
BLAST of CK935632 vs. ExPASy Swiss-Prot
Match: TPIS_HAHCH (Triosephosphate isomerase OS=Hahella chejuensis (strain KCTC 2396) GN=tpiA PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.167e-44
Identity = 106/248 (42.74%), Postives = 143/248 (57.66%), Query Frame = 2
Query:   56 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGF-HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRGAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSA 793
            RK  + GNWK NG+ E  K ++  +   +                +L  V+S++      + +QNC   + GA+TGE+SA+M  +++  WVILGHSERR +  E +E +  KV  A+  GL  I CVGETL  R +G   EV   Q  A+   V    + V+AYEPVWAIGTGK A+P  AQ +H  LR   +    P+IA   RI+YGGSV  +N KEL + PDVDG LVGGASL   EF+ II++A
Sbjct:    2 RKKLIAGNWKSNGSLERNKALLEGIVNAKALGSVDVVVCPPFP--YLQSVESAVSDSMIELGSQNCSATEDGAYTGEVSAKMCADMKCSWVILGHSERRALYAENDEVIACKVKRAVESGLAPILCVGETLADRESGRAEEVTLKQLDAVFMSVQPDDSWVVAYEPVWAIGTGKTASPEDAQSMHKALRN-NIRKHFPQIADKIRILYGGSVKSSNAKELFSMPDVDGALVGGASLVSEEFVSIIEAA 246          
BLAST of CK935632 vs. ExPASy Swiss-Prot
Match: TPIS_HERAR (Triosephosphate isomerase OS=Herminiimonas arsenicoxydans GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.991e-44
Identity = 110/251 (43.82%), Postives = 141/251 (56.18%), Query Frame = 2
Query:   56 RKFFVGGNWKCNGTTEEVKKIVSVLNE--GQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRGAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 793
            R+  V GNWK NG+      +++ +    G                  L L+  S      + AQ+      GA+TGE+S  ML+     +VI+GHSERR    E NE V  K   ALS GL  I CVGETLEQR AG T EVV  Q  A+   +  +  + IV+AYEPVWAIGTGK ATP  AQEVH  LR+ L A  + + A   RI+YGGS+   N KEL A PD+DG L+GGA+LK  +F+ II++A
Sbjct:    2 RRKLVAGNWKMNGSLAANALLLAEIKAEFGNPACDVAVCVPAPYLAQCLSLLSDST---IALGAQDVSSHDSGAYTGEVSTAMLLEFACRYVIVGHSERRAYFGETNELVAQKTVRALSAGLMPIVCVGETLEQREAGQTDEVVGRQIDAVLSSIAENDLAKIVVAYEPVWAIGTGKTATPEMAQEVHVMLRRRLHAKNA-QAATEVRILYGGSMKPDNAKELLAMPDIDGGLIGGAALKAADFLAIIRAA 248          
BLAST of CK935632 vs. ExPASy Swiss-Prot
Match: TPIS_PARD8 (Triosephosphate isomerase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=tpiA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.794e-44
Identity = 108/249 (43.37%), Postives = 142/249 (57.03%), Query Frame = 2
Query:   56 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG-FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRGAGSTMEVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 790
            RK  V GNWK N T  E   +   L+E                   L  V +++      VAA+NC  K+ GA+TGE+SA M+ +    +VILGHSERR   +E  E +  KV  AL+ GL  I C+GE LE+R AG   EVV AQ       +S+  +  I+LAYEPVWAIGTGK A+  QA+E+H  +R  L A    E+A    I+YGGS N  N KEL A+P+VDG L+GGASL   +F+ II++
Sbjct:    2 RKNIVAGNWKMNTTLAEGLALAKGLDEALKGKTPNCDVIIGTPFTHLASVAAAIDTNKIGVAAENCADKEKGAYTGEVSAAMVASTGAKYVILGHSERRAYYHETPEILKTKVELALANGLTPIFCIGEVLEEREAGKHFEVVDAQIAGSLFDLSAEDFGKIILAYEPVWAIGTGKTASAEQAEEIHAHIRATLAAKYGNEVADNCTILYGGSCNAGNAKELFAKPNVDGGLIGGASLAVDKFMPIIEA 250          
BLAST of CK935632 vs. ExPASy Swiss-Prot
Match: TPIS_ENT38 (Triosephosphate isomerase OS=Enterobacter sp. (strain 638) GN=tpiA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.794e-44
Identity = 110/248 (44.35%), Postives = 143/248 (57.66%), Query Frame = 2
Query:   68 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVA--AQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRGAGSTMEVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 796
            V GNWK NG+   V ++++ L + +                +L L K +   G H+   AQN  V   GAFTGE SAEML ++   ++I+GHSERR    E +E +  K A    QGL  + C+GET  +  AG T EV A Q  A+      S++  +V+AYEPVWAIGTGK ATPAQAQ VH  +R   +A    ++A    I YGGSVN AN  EL  QPD+DG LVGGASLK + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVNELIANLRK-ELAGVTGCAVAIAPPDIYLDLAKHAA-DGSHIVLGAQNVDVNLSGAFTGETSAEMLKDIGAKYIIIGHSERRTYHKESDELIAKKFAVLKEQGLIPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGASAFEGVVIAYEPVWAIGTGKSATPAQAQAVHKFIRDH-IAKADAKVAEQVIIQYGGSVNAANAAELFTQPDIDGALVGGASLKADAFAVIVKAAE 250          
BLAST of CK935632 vs. ExPASy Swiss-Prot
Match: TPIS_KLEPN (Triosephosphate isomerase OS=Klebsiella pneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.882e-44
Identity = 109/247 (44.13%), Postives = 139/247 (56.28%), Query Frame = 2
Query:   68 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG-FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRGAGSTMEVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 796
            V GNWK NG+   V ++V+ L   +                +L L K +      H+ AQN  V   GAFTGE SAEML ++   ++I+GHSERR    E +E +  K A    QGL  + C+GET  +  AG T EV A Q  A+      + +  +V+AYEPVWAIGTGK ATPAQAQ VH  +R   +A    +IA    I YGGSVN  N  EL  QPD+DG LVGGASLK + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRT-ELAGVSGCAVAIAPPEMYLDLAKRAAEGSHIHLGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAVFEGVVIAYEPVWAIGTGKSATPAQAQAVHKFIRDH-IAKADAKIAEQVIIQYGGSVNAGNAAELFTQPDIDGALVGGASLKADAFAVIVKAAE 250          
The following BLAST results are available for this feature:
BLAST of CK935632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CHLPD1.801e-4545.06Triosephosphate isomerase OS=Chlorobium phaeobacte... [more]
TPIS_PORGI6.844e-4542.57Triosephosphate isomerase OS=Porphyromonas gingiva... [more]
TPIS_PORG36.844e-4542.57Triosephosphate isomerase OS=Porphyromonas gingiva... [more]
TPIS_BACV86.844e-4544.54Triosephosphate isomerase OS=Bacteroides vulgatus ... [more]
TPIS_BACTN6.844e-4544.54Triosephosphate isomerase OS=Bacteroides thetaiota... [more]
TPIS_HAHCH1.167e-4442.74Triosephosphate isomerase OS=Hahella chejuensis (s... [more]
TPIS_HERAR1.991e-4443.82Triosephosphate isomerase OS=Herminiimonas arsenic... [more]
TPIS_PARD85.794e-4443.37Triosephosphate isomerase OS=Parabacteroides dista... [more]
TPIS_ENT385.794e-4444.35Triosephosphate isomerase OS=Enterobacter sp. (str... [more]
TPIS_KLEPN9.882e-4444.13Triosephosphate isomerase OS=Klebsiella pneumoniae... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_E08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935632 ID=CK935632; Name=CK935632; organism=Citrus sinensis; type=EST; length=820bp
GGGAAACAAATAGAAAATAAAACATAACACACACACGCACTCGTCGAAAA
TGGGCAGGAAGTTCTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACT
GAAGAAGTGAAAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATC
TTCTGATGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGAC
TGGTGAAGAGTTCGTTGAGGCCTGGCTTTCATGTTGCGGCACAGAATTGC
TGGGTCAAGAAGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCT
CGTCAATTTGGAAATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGAC
TCATTTTGAATGAATTAAATGAGTTTGTTGGGGATAAGGTTGCATATGCA
CTTTCTCAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCA
GCGTGGAGCAGGATCTACTATGGAAGTTGTTGCTGCACAAACTAAAGCAA
TCGCAGATCGAGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCT
GTGTGGGCTATTGGAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGA
AGTACATTTTGAACTGAGGAAATGGCTTCTTGCAAACACCAGTCCTGAAA
TTGCTGCAGCAACACGGATCATCTACGGAGGATCCGTAAATGGTGCAAAC
TGCAAGGAATTGGCTGCACAGCCTGATGTTGACGGATTTTTGGTTGGTGG
TGCTTCGTTGAAGCCGGAGTTCATTGACATCATCAAATCTGCTGAGCTGA
AGTAAAATTCTTGAGCTTTA
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