CK935643

Overview
NameCK935643
Unique NameCK935643
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935643_ssr564 microsatellite CK935643_ssr564:564..578. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9024 contig Csv1_Contig9024:658..1304. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935643 vs. ExPASy Swiss-Prot
Match: LOXX_SOYBN (Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.187e-15
Identity = 47/121 (38.84%), Postives = 68/121 (56.20%), Query Frame = 2
Query:    2 SPGYEKFLLNPQHTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 364
            +P Y++ + NPQ  +L ++  + +    ++V + LS H+ DE YLG+      +W  D + L  F +F + L  IE  IN RN D  L+ R G    PY LL  SS  G+T +GIPNSISI
Sbjct:  746 TPEYDEMVKNPQKAYLRTITPKFETLIDLSVIEILSRHASDEIYLGERET--PNWTTDKKALEAFKRFGSKLTGIEGKINARNSDPSLRNRTGPVQLPYTLLHRSSEEGLTFKGIPNSISI 864          
BLAST of CK935643 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.363e-15
Identity = 48/120 (40.00%), Postives = 64/120 (53.33%), Query Frame = 2
Query:   20 FLLNPQHTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGR-----GIPNSISI 364
            F   P+  +L +LP+QLQ   VMA  D LS+H+ DEEY+G        W  D EV   F  F   + +I + +   NKD   + R GAG+ PY LL P +G  +  +     GIPNSISI
Sbjct:  815 FKAAPEKVWLDTLPSQLQTVMVMATLDLLSSHASDEEYMG--THQEPAWQRDGEVDKAFQVFQKKMRDIAEQVEEWNKDDSRRNRHGAGVVPYVLLRPLNGNPMDAKTVMEMGIPNSISI 932          
BLAST of CK935643 vs. ExPASy Swiss-Prot
Match: LOX2_ORYSJ (Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=LOX1.1 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.085e-14
Identity = 47/124 (37.90%), Postives = 68/124 (54.84%), Query Frame = 2
Query:   11 YEKFLLNPQHTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSS------GPGVTGRGIPNSISI 364
            Y++   +P+  F+ ++  Q+QA   +++ + LS HS DE YLGQ +     W +D + L  F +F A L EIE  +   NKD   K R G    PY LL P++        G++ RGIPNSISI
Sbjct:  749 YDELARDPEKVFVRTITKQMQAIVGISLLEILSKHSSDEVYLGQRDT--PEWTSDAKALEAFKRFGARLTEIESRVVAMNKDPHRKNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870          
BLAST of CK935643 vs. ExPASy Swiss-Prot
Match: LOX1_HORVU (Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.085e-14
Identity = 49/129 (37.98%), Postives = 72/129 (55.81%), Query Frame = 2
Query:    5 PGYEKFL---LNPQHTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPS------SGPGVTGRGIPNSISI 364
            PG E++     +P+  F+ ++ +Q+Q    +++ + LS HS DE YLGQ +     W +DP+ L +F +FS  L EIE  +   N D  LK R G    PY LL P+      +  G+T +GIPNSISI
Sbjct:  736 PGTEEYAELERDPERAFIHTITSQIQTIIGVSLLEVLSKHSSDELYLGQRDT--PEWTSDPKALEVFKRFSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862          
BLAST of CK935643 vs. ExPASy Swiss-Prot
Match: LOXA_PHAVU (Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.418e-14
Identity = 48/119 (40.34%), Postives = 71/119 (59.66%), Query Frame = 2
Query:   11 YEKFLLNPQHTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPS-SGPGVTGRGIPNSISI 364
            Y +   N Q  +L ++  +++A   ++V + LS H+ DE YLGQ +  + +W N+ + L  F +F   L+EIE+ I  RNKD  L+ R G    PY +LLP+    G+T RGIPNSISI
Sbjct:  746 YGELTSNYQKAYLRTITGKVEAIVDLSVIEILSRHASDEVYLGQRD--NPNWTNNIKALQAFKRFGQKLKEIEEKIMGRNKDSSLRNRNGPVKMPYTVLLPTCEDEGLTFRGIPNSISI 862          
BLAST of CK935643 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.158e-14
Identity = 48/112 (42.86%), Postives = 62/112 (55.36%), Query Frame = 2
Query:   44 FLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGP-----GVTGRGIPNSISI 364
            FL ++  QLQ    +++ + LS HS DE YLGQ +    +W  D E L  F +F   LE IE  I  RN D R K R G    PY LL P++       G+TG+GIPNS+SI
Sbjct:  777 FLKTITPQLQTLLGISIIEILSMHSTDEIYLGQRDS--PNWTADDEPLEAFKRFGKELELIENNIIRRNNDKRFKNRTGPVNIPYTLLYPNTTDYTREGGITGKGIPNSVSI 886          
BLAST of CK935643 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.035e-14
Identity = 47/125 (37.60%), Postives = 65/125 (52.00%), Query Frame = 2
Query:   20 FLLNPQHTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTG----------RGIPNSISI 364
            F+  P+   L + P+Q Q+  V+A+ D LSTHS DEEY+G   +    W  D  +   F++F  +  +I + ++  N D   K R GAG+ PY LL PS G    G           GIPNSISI
Sbjct:  814 FVEAPEKVLLDTFPSQYQSAIVLAILDLLSTHSSDEEYMGTHEE--PAWTKDGVINQAFEEFKESTRKIVEQVDEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936          
BLAST of CK935643 vs. ExPASy Swiss-Prot
Match: LOX1_LENCU (Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.200e-13
Identity = 44/121 (36.36%), Postives = 63/121 (52.07%), Query Frame = 2
Query:    2 SPGYEKFLLNPQHTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 364
            +P Y+    N +  +L ++  +      + + + LS H+ DE+YLG+  +    W  D      F +F   L EIE+ +  RN D  L+ R G    PY LL PSS  G+T RGIPNSISI
Sbjct:  747 TPEYDDLAKNYEKAYLRTITPKNDTLTDLTIIEVLSRHASDEQYLGERIE-GDDWTTDSVPKEAFKRFGKKLAEIEEKLTQRNNDESLRNRYGPVKMPYTLLYPSSEEGLTCRGIPNSISI 866          
BLAST of CK935643 vs. ExPASy Swiss-Prot
Match: LOX3_ORYSJ (Putative lipoxygenase 3 OS=Oryza sativa subsp. japonica GN=Os03g0700400 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.778e-13
Identity = 46/118 (38.98%), Postives = 64/118 (54.24%), Query Frame = 2
Query:   29 NPQHTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPS------SGPGVTGRGIPNSISI 364
            +P+  F+ ++ +QLQ    +++ + LS HS DE YLGQ +     W +D   L  F +FS  L EIE  +   N D  LK R G    PY LL P+      +  G+T +GIPNSISI
Sbjct:  751 DPERAFIRTITSQLQTIIGISLIEVLSKHSSDEVYLGQRDT--PAWTSDARALEAFRRFSDRLVEIEGKVVGMNGDAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866          
BLAST of CK935643 vs. ExPASy Swiss-Prot
Match: LOXB_PHAVU (Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.263e-12
Identity = 43/115 (37.39%), Postives = 59/115 (51.30%), Query Frame = 2
Query:    2 SPGYEKFLLNPQHTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGI 346
            S  Y     NP+  FL ++  + +    + V + LS H+ DE YLG+ +    HW +D   L  F +F   L EIEK +  +N D  L+ R G    PY LL PSS  G+T RGI
Sbjct:  628 SAEYAALAKNPEKEFLKTITGKKETLIDLTVIEILSRHASDEIYLGERDG-GDHWTSDAGPLEAFKRFGKKLAEIEKKLVQKNNDETLRNRTGPAKMPYTLLYPSSEEGLTFRGI 741          
The following BLAST results are available for this feature:
BLAST of CK935643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOXX_SOYBN2.187e-1538.84Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV... [more]
LOX22_HORVU6.363e-1540.00Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]
LOX2_ORYSJ1.085e-1437.90Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=... [more]
LOX1_HORVU1.085e-1437.98Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 S... [more]
LOXA_PHAVU1.418e-1440.34Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 ... [more]
LOX5_ARATH3.158e-1442.86Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]
LOX21_HORVU7.035e-1437.60Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX1_LENCU1.200e-1336.36Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1[more]
LOX3_ORYSJ7.778e-1338.98Putative lipoxygenase 3 OS=Oryza sativa subsp. jap... [more]
LOXB_PHAVU2.263e-1237.39Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_C03 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935643 ID=CK935643; Name=CK935643; organism=Citrus sinensis; type=EST; length=647bp
GAGTCCTGGTTATGAGAAATTCCTTTTAAACCCTCAGCATACTTTTTTGT
CTTCACTGCCCACTCAGCTTCAAGCAACTAAAGTGATGGCTGTCCAAGAC
ACTCTGTCCACTCACTCTCCTGATGAAGAGTATCTAGGTCAGGTGAACCA
GTTACACAGCCACTGGATCAATGACCCTGAAGTTTTGAATATGTTTGATA
AGTTCTCTGCTAATCTGGAGGAGATTGAAAAGATAATAAATACAAGAAAT
AAAGATTTCCGTCTTAAAGGCAGATGTGGTGCTGGCATTCCACCATATGA
ACTGCTTCTTCCTTCCTCTGGTCCGGGAGTAACTGGTCGAGGAATCCCCA
ATAGTATTTCTATCTGATGGACTTAGCTAAATTGAGACACTGGTAGATGC
CTTTTTGTCACTATCGGTTAGTGCATACCATTTTATTTCTGTGCTGTGCG
GTTGTATGGACCTTCAATAGATCTTTTGGGGTTCGGTATTTGATATTAAA
GCTCTGTAATTTGTGGGTAAAAGATATGATAGGACACAGAAAACTTGGAA
TATCATGATATTGGATCTGATCTGATCTTTGTAAAGCAACATATAAGATG
CTGCAACTTATATTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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