CK935643

Overview
NameCK935643
Unique NameCK935643
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK935643 vs. ExPASy Swiss-Prot
Match: LOX4_ORYSJ (Probable lipoxygenase 4 OS=Oryza sativa subsp. japonica GN=Os03g0700700 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.467e-11
Identity = 43/114 (37.72%), Postives = 62/114 (54.39%), Query Frame = 2 
Query:   44 FLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSS-------GPGVTGRGIPNSISI 364
            F+ ++ +Q Q    +++ + LS HS DE YLGQ +     W +D + L+ F +F + L +IE  I   N +  LK R G    PY LL P++       G G+T  GIPNSISI
Sbjct:  766 FIHTITSQFQTILGISLIEILSKHSSDEVYLGQRDT--PEWTSDAKALDAFKRFGSRLVDIENRIKDMNGNSALKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
The following BLAST results are available for this feature:
BLAST of CK935643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX4_ORYSJ1.467e-1137.72Probable lipoxygenase 4 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_C03 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935643 ID=CK935643; Name=CK935643; organism=Citrus sinensis; type=EST; length=647bp
GAGTCCTGGTTATGAGAAATTCCTTTTAAACCCTCAGCATACTTTTTTGT
CTTCACTGCCCACTCAGCTTCAAGCAACTAAAGTGATGGCTGTCCAAGAC
ACTCTGTCCACTCACTCTCCTGATGAAGAGTATCTAGGTCAGGTGAACCA
GTTACACAGCCACTGGATCAATGACCCTGAAGTTTTGAATATGTTTGATA
AGTTCTCTGCTAATCTGGAGGAGATTGAAAAGATAATAAATACAAGAAAT
AAAGATTTCCGTCTTAAAGGCAGATGTGGTGCTGGCATTCCACCATATGA
ACTGCTTCTTCCTTCCTCTGGTCCGGGAGTAACTGGTCGAGGAATCCCCA
ATAGTATTTCTATCTGATGGACTTAGCTAAATTGAGACACTGGTAGATGC
CTTTTTGTCACTATCGGTTAGTGCATACCATTTTATTTCTGTGCTGTGCG
GTTGTATGGACCTTCAATAGATCTTTTGGGGTTCGGTATTTGATATTAAA
GCTCTGTAATTTGTGGGTAAAAGATATGATAGGACACAGAAAACTTGGAA
TATCATGATATTGGATCTGATCTGATCTTTGTAAAGCAACATATAAGATG
CTGCAACTTATATTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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