CK935645

Overview
NameCK935645
Unique NameCK935645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:56..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935645 vs. ExPASy Swiss-Prot
Match: NDK_MACCJ (Nucleoside diphosphate kinase OS=Macrococcus caseolyticus (strain JCSC5402) GN=ndk PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 6.566e-41
Identity = 68/110 (61.82%), Postives = 84/110 (76.36%), Query Frame = 2
Query:   77 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 406
            ME+TF+MIKPDGV RGL+GEI+ R E KG  + G KLMTV    A+ HY + S KPFFG L+E+ITSGPV AM+ EG+ VV+ GRT++G TNPA+SAPGTIRGD  +  G
Sbjct:    1 MEKTFLMIKPDGVGRGLIGEIVKRIENKGIKVVGAKLMTVSEDLAKTHYGEHSEKPFFGELVEFITSGPVFAMVLEGDNVVEIGRTLVGKTNPAESAPGTIRGDFGMTVG 110          

HSP 2 Score: 43.1282 bits (100), Expect = 6.566e-41
Identity = 24/44 (54.55%), Postives = 28/44 (63.64%), Query Frame = 1
Query:  388 FGYRDG-NIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIY 513
            FG   G NIIHGSDSV SA KEIALWF +  I ++      W+Y
Sbjct:  105 FGMTVGKNIIHGSDSVASADKEIALWFKEEEILSYDLVTSAWVY 148          
BLAST of CK935645 vs. ExPASy Swiss-Prot
Match: NDKB_CANFA (Nucleoside diphosphate kinase B OS=Canis familiaris GN=NME2 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 8.542e-41
Identity = 64/113 (56.64%), Postives = 81/113 (71.68%), Query Frame = 2
Query:   68 LKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 406
            +   E+TFI IKPDGVQRGLVG+I+ RFE+KGF L  +K +       ++HY DL  +PF+  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  G
Sbjct:    1 MAHQERTFIAIKPDGVQRGLVGDIVKRFEQKGFRLVAMKFLRASEDLLKEHYIDLKDRPFYPGLVKYMHSGPVVAMVWEGLNVVKTGRMMLGETNPADSKPGTIRGDFCIQVG 113          

HSP 2 Score: 50.447 bits (119), Expect = 8.542e-41
Identity = 23/38 (60.53%), Postives = 31/38 (81.58%), Query Frame = 1
Query:  406 NIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 516
            NIIHGSDSV+SA+KEI+LWF P+  ++++S    WIYE
Sbjct:  115 NIIHGSDSVKSAEKEISLWFKPEELVDYKSCAFDWIYE 152          
BLAST of CK935645 vs. ExPASy Swiss-Prot
Match: NDKA1_XENLA (Nucleoside diphosphate kinase A1 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.450e-40
Identity = 64/109 (58.72%), Postives = 80/109 (73.39%), Query Frame = 2
Query:   80 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 406
            E+TFI IKPDGVQRGL+G+II RFE+KGF L  +K     +    +HY DL  +PF+  L+EY++SGPV+AM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  G
Sbjct:    6 ERTFIAIKPDGVQRGLMGDIIKRFEQKGFRLVAMKFQQASQDLLRQHYIDLKDRPFYPGLVEYMSSGPVLAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVG 114          

HSP 2 Score: 49.6766 bits (117), Expect = 1.450e-40
Identity = 24/38 (63.16%), Postives = 28/38 (73.68%), Query Frame = 1
Query:  406 NIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 516
            NIIHGSDSVESA KEIALWF D   +  +S  + W+YE
Sbjct:  116 NIIHGSDSVESANKEIALWFKDEELVENKSCAYEWVYE 153          
BLAST of CK935645 vs. ExPASy Swiss-Prot
Match: NDK_DESAP (Nucleoside diphosphate kinase OS=Desulforudis audaxviator (strain MP104C) GN=ndk PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.451e-40
Identity = 66/110 (60.00%), Postives = 83/110 (75.45%), Query Frame = 2
Query:   77 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 406
            M++TF+M+KPDGVQRGLVGE+I RFE++GF L  LKL+ +DR  AE+HYE+   KPFF  L+ YITSGPV AM+ EG  VV T R ++GAT PA++ PGTIRG   I  G
Sbjct:    1 MDRTFVMVKPDGVQRGLVGEVITRFERRGFKLVALKLLWIDRGLAERHYEEHRGKPFFDELVRYITSGPVAAMVLEGREVVTTVREMMGATQPAKALPGTIRGTYGIDVG 110          

HSP 2 Score: 47.7506 bits (112), Expect = 1.451e-40
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 1
Query:  406 NIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 516
            NI+HGSDS  SA +EI L+F DG  I ++ +L PWIYE
Sbjct:  112 NIVHGSDSAASAAREIGLFFADGELIEYERALDPWIYE 149          
BLAST of CK935645 vs. ExPASy Swiss-Prot
Match: NDK_SYNJB (Nucleoside diphosphate kinase OS=Synechococcus sp. GN=ndk PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.891e-40
Identity = 65/110 (59.09%), Postives = 82/110 (74.55%), Query Frame = 2
Query:   77 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 406
            ME+TFI IKPDGVQRGLVG II R E +G+ L GLKL+ V +  AE HY +   +PFF SL+++ITSGPVVAM+W+G+GV+   R +IG TNP ++ PGTIRGD  I  G
Sbjct:    1 MERTFIAIKPDGVQRGLVGTIIQRLESRGYQLVGLKLVQVSQELAEAHYAEHKERPFFHSLVKFITSGPVVAMVWQGKGVIAAARKLIGKTNPLEAEPGTIRGDFGIDIG 110          

HSP 2 Score: 48.9062 bits (115), Expect = 1.891e-40
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 1
Query:  406 NIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 516
            N+IHGSD VE+AQ+EIALWF +   ++W      WIYE
Sbjct:  112 NLIHGSDGVETAQREIALWFDESELVSWTPVAQSWIYE 149          
BLAST of CK935645 vs. ExPASy Swiss-Prot
Match: NDK_GEOKA (Nucleoside diphosphate kinase OS=Geobacillus kaustophilus GN=ndk PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.464e-40
Identity = 66/109 (60.55%), Postives = 83/109 (76.15%), Query Frame = 2
Query:   80 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 406
            E+TFIM+KPDGVQR L+GEI+ RFEKKGF L G KLM V R  AE+HY +   +PFFG L+++ITSGPV AM+WEGE V+   R ++G TNP ++APGTIRGD  +  G
Sbjct:    3 ERTFIMVKPDGVQRNLIGEIVARFEKKGFQLVGAKLMQVSRELAEQHYAEHKERPFFGELVDFITSGPVFAMVWEGENVIAAARQMMGKTNPQEAAPGTIRGDFGLTVG 111          

HSP 2 Score: 38.5058 bits (88), Expect = 2.464e-40
Identity = 18/44 (40.91%), Postives = 31/44 (70.45%), Query Frame = 1
Query:  388 FGYRDG-NIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 513
            FG   G N+IHGSDS +SA++EI+L+F +   +++   ++ W+Y
Sbjct:  106 FGLTVGKNVIHGSDSPQSAKREISLFFKEEELVSYSKQINAWLY 149          
BLAST of CK935645 vs. ExPASy Swiss-Prot
Match: NDK_HELMI (Nucleoside diphosphate kinase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=ndk PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.464e-40
Identity = 69/110 (62.73%), Postives = 85/110 (77.27%), Query Frame = 2
Query:   77 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 406
            ME+T++MIKPDGVQRGLVGEII RFEKKGF L G+K + + R  AEKHY +   KPFF  L++YI SGPVVAM WEG+ +V   R ++GATNPA++APGTIRG  A+  G
Sbjct:    1 MERTYLMIKPDGVQRGLVGEIISRFEKKGFKLVGMKFLRLTREMAEKHYAEHVGKPFFAGLVDYIISGPVVAMCWEGKDIVSVSREMMGATNPAKAAPGTIRGTYAVDIG 110          

HSP 2 Score: 40.0466 bits (92), Expect = 2.464e-40
Identity = 18/38 (47.37%), Postives = 26/38 (68.42%), Query Frame = 1
Query:  406 NIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 516
            NIIHGSDS  SA++E+A++F  D  + W  +L  W+ E
Sbjct:  112 NIIHGSDSPASAERELAIYFQSDELVEWDRTLQGWLTE 149          
BLAST of CK935645 vs. ExPASy Swiss-Prot
Match: NDK_BREBN (Nucleoside diphosphate kinase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=ndk PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 2.466e-40
Identity = 65/111 (58.56%), Postives = 84/111 (75.68%), Query Frame = 2
Query:   77 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGI 409
            ME+TF+M+KPDGVQR L+GEI+ RFEKKG+ L G KLMTV R  AE+HY +   +PFFG L+++ITSGPV AM+W+G  V+ T R ++G TNP  +A GTIRGD A   G+
Sbjct:    1 MEKTFLMVKPDGVQRNLIGEIVSRFEKKGYQLVGAKLMTVSRELAEEHYAEHKERPFFGELVDFITSGPVFAMVWQGNNVITTARAMMGKTNPVDAASGTIRGDFATSVGM 111          

HSP 2 Score: 40.817 bits (94), Expect = 2.466e-40
Identity = 18/36 (50.00%), Postives = 27/36 (75.00%), Query Frame = 1
Query:  406 NIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI 510
            NIIHGSDS ESA++EI LWF  +  ++++ ++  WI
Sbjct:  112 NIIHGSDSPESAEREIGLWFSAEEVLSFEKTIQRWI 147          
BLAST of CK935645 vs. ExPASy Swiss-Prot
Match: NDK3_HUMAN (Nucleoside diphosphate kinase 3 OS=Homo sapiens GN=NME3 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 3.198e-40
Identity = 62/109 (56.88%), Postives = 80/109 (73.39%), Query Frame = 2
Query:   80 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 406
            E+TF+ +KPDGVQR LVGEI+ RFE+KGF L  LKL+        +HY +L  +PF+G L++Y+ SGPVVAM+W+G  VV+T R +IGATNPA + PGTIRGD  I  G
Sbjct:   22 ERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVG 130          

HSP 2 Score: 50.0618 bits (118), Expect = 3.198e-40
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 1
Query:  406 NIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 516
            N+IHGSDSVESA++EIALWF  D  + W+ S   W+YE
Sbjct:  132 NLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE 169          
BLAST of CK935645 vs. ExPASy Swiss-Prot
Match: NDK_ARCFU (Nucleoside diphosphate kinase OS=Archaeoglobus fulgidus GN=ndk PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.451e-40
Identity = 63/110 (57.27%), Postives = 85/110 (77.27%), Query Frame = 2
Query:   77 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 406
            ME+TF+M+KPDGVQRGLVGE+I R E+KG  +  +K++ + R  AE HY +   KPFF +L++YITSGPVVAM+ EG+  +K  RT++GATNPA++APGTIRGD  +  G
Sbjct:    1 MERTFVMVKPDGVQRGLVGEVIGRLERKGLKIVAMKMLWIAREMAENHYAEHREKPFFSALVDYITSGPVVAMVVEGKNAIKVVRTLVGATNPAEAAPGTIRGDFGLDVG 110          

HSP 2 Score: 44.669 bits (104), Expect = 5.451e-40
Identity = 19/38 (50.00%), Postives = 28/38 (73.68%), Query Frame = 1
Query:  406 NIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 516
            N++H SDS +SA++EI+L+F D  I NW+ +   WIYE
Sbjct:  112 NVVHASDSPQSAEREISLFFSDDEIVNWEKADEDWIYE 149          
The following BLAST results are available for this feature:
BLAST of CK935645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_MACCJ6.566e-4161.82Nucleoside diphosphate kinase OS=Macrococcus caseo... [more]
NDKB_CANFA8.542e-4156.64Nucleoside diphosphate kinase B OS=Canis familiari... [more]
NDKA1_XENLA1.450e-4058.72Nucleoside diphosphate kinase A1 OS=Xenopus laevis... [more]
NDK_DESAP1.451e-4060.00Nucleoside diphosphate kinase OS=Desulforudis auda... [more]
NDK_SYNJB1.891e-4059.09Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_GEOKA2.464e-4060.55Nucleoside diphosphate kinase OS=Geobacillus kaust... [more]
NDK_HELMI2.464e-4062.73Nucleoside diphosphate kinase OS=Heliobacterium mo... [more]
NDK_BREBN2.466e-4058.56Nucleoside diphosphate kinase OS=Brevibacillus bre... [more]
NDK3_HUMAN3.198e-4056.88Nucleoside diphosphate kinase 3 OS=Homo sapiens GN... [more]
NDK_ARCFU5.451e-4057.27Nucleoside diphosphate kinase OS=Archaeoglobus ful... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_C05 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935645 ID=CK935645; Name=CK935645; organism=Citrus sinensis; type=EST; length=677bp
GGGGATTCTCTCGCATGTGTGCTGTGCTATTTCACTCAATTCTCAAAACA
AGTTGGTTTCTCTGAATCTCAAAGAAATGGAACAAACTTTCATCATGATC
AAGCCCGATGGGGTCCAAAGAGGCCTTGTTGGTGAAATCATCATCAGATT
TGAGAAGAAGGGTTTCTCTTTGAAGGGTTTGAAGCTTATGACTGTGGACC
GCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCATCGAAGCCTTTCTTT
GGTTCTCTGATTGAGTACATTACCTCTGGTCCTGTTGTTGCTATGATTTG
GGAGGGTGAAGGCGTTGTTAAGACTGGCCGCACTATTATTGGAGCCACCA
ACCCTGCGCAGTCTGCTCCTGGAACCATCCGTGGTGATTTGGCTATCGTG
ACGGGAATATTATCCATGGAAGTGACTCAGTTGAGAGTGCCCAGAAAGAA
ATCGCCTTGTGGTTCCCTGATGGCCCTATTAACTGGCAGAGCAGCCTTCA
CCCTTGGATCTATGAGTAAACTAATGTTTGGTTGAGGAGCCTAATTGTTC
CTGCAGTTAGACTTATCCCTATCCCTATCCCTATTTCCTTATTTATGGTT
ACTCCTTGTTGGTGAACTGTTATGAAGTATTGAGTTAAATTGAGACCGAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
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