CK935645 | Citrus Genome Database

Overview


Name	CK935645
Unique Name	CK935645
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	677

Libraries


Library Name	Type
Developing fruit 24 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1498	contig	Csv1_Contig1498:56..735.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK935645 vs. ExPASy Swiss-Prot
Match: NDK_SYNJA (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=ndk PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.102e-40
Identity = 64/110 (58.18%), Postives = 80/110 (72.73%), Query Frame = 2

Query:   77 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 406
            ME+TFI IKPDGVQRGLVG II R E +G+ L GLKL+ V +  AE HY +   +PFF  L+++ITSGPVVAM+W+G+GV+   R +IG TNP  + PGTIRGD  I  G
Sbjct:    1 MERTFIAIKPDGVQRGLVGSIIQRLESRGYQLVGLKLVQVSQELAEAHYAEHRERPFFPGLVKFITSGPVVAMVWQGKGVIAAARKLIGKTNPLDAEPGTIRGDFGIDIG 110

HSP 2 Score: 49.2914 bits (116), Expect = 7.102e-40
Identity = 20/38 (52.63%), Postives = 27/38 (71.05%), Query Frame = 1

Query:  406 NIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 516
            N++HGSD  E+AQ+EIALWF +   +NW  +   WIYE
Sbjct:  112 NLVHGSDGPETAQREIALWFQESELVNWTPATQSWIYE 149

[Close]

BLAST of CK935645 vs. ExPASy Swiss-Prot
Match: NDK_SYNSC (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9605) GN=ndk PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.206e-39
Identity = 68/109 (62.39%), Postives = 85/109 (77.98%), Query Frame = 2

Query:   80 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 406
            E+TFI IKPDGVQRGLVGEI+ RFE+KGF L GLK +T  R  AE+HY     +PFF  L+++ITSGPVVAM+WEG+GV+ + R +IGAT P ++ PGTIRGDLA+  G
Sbjct:    3 ERTFIAIKPDGVQRGLVGEILGRFERKGFKLVGLKQITPSRALAEQHYGVHKERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEAEPGTIRGDLAVNIG 111

HSP 2 Score: 40.0466 bits (92), Expect = 1.206e-39
Identity = 19/38 (50.00%), Postives = 23/38 (60.53%), Query Frame = 1

Query:  406 NIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 516
            N+IHGSD+ E+AQ EI LWF    +N W  S   W  E
Sbjct:  113 NVIHGSDAAETAQFEIGLWFQASELNDWSPSDQGWRVE 150

[Close]

BLAST of CK935645 vs. ExPASy Swiss-Prot
Match: NDK_BACC1 (Nucleoside diphosphate kinase OS=Bacillus cereus (strain ATCC 10987) GN=ndk PE=3 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.207e-39
Identity = 64/107 (59.81%), Postives = 82/107 (76.64%), Query Frame = 2

Query:   77 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAI 397
            ME+TF+M+KPDGVQR  +GEI+ RFEKKGF L G KLM V    A +HY + + KPFFG L+++ITSGPV AM+W+GEGVV T R ++G T P ++APGTIRGD  +
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGV 107

HSP 2 Score: 41.5874 bits (96), Expect = 1.207e-39
Identity = 18/37 (48.65%), Postives = 29/37 (78.38%), Query Frame = 1

Query:  406 NIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 513
            NIIHGSDS+ESA++EIA++F +   +++   ++ WIY
Sbjct:  112 NIIHGSDSLESAEREIAIFFKEEELVDYSKLMNEWIY 148

[Close]

BLAST of CK935645 vs. ExPASy Swiss-Prot
Match: NDK_BACCR (Nucleoside diphosphate kinase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=ndk PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.572e-39
Identity = 64/107 (59.81%), Postives = 81/107 (75.70%), Query Frame = 2

Query:   77 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAI 397
            ME+TF+M+KPDGVQR  +GEI+ RFEKKGF L G KLM V    A +HY +   KPFFG L+++ITSGPV AM+W+GEGVV T R ++G T P ++APGTIRGD  +
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHKEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGV 107

HSP 2 Score: 41.5874 bits (96), Expect = 1.572e-39
Identity = 18/37 (48.65%), Postives = 29/37 (78.38%), Query Frame = 1

Query:  406 NIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 513
            NIIHGSDS+ESA++EIA++F +   +++   ++ WIY
Sbjct:  112 NIIHGSDSLESAEREIAIFFKEEELVDYSKLMNEWIY 148

[Close]

BLAST of CK935645 vs. ExPASy Swiss-Prot
Match: NDK_BACSU (Nucleoside diphosphate kinase OS=Bacillus subtilis GN=ndk PE=1 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 2.047e-39
Identity = 66/110 (60.00%), Postives = 82/110 (74.55%), Query Frame = 2

Query:   77 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 406
            ME+TFIM+KPDGVQR L+G+I+ RFE+KG  L G KLM V    AEKHY +   KPFFG L+E+ITSGPV AM+WEGE V++  R +IG TNP ++ PGTIRGD  +  G
Sbjct:    2 MEKTFIMVKPDGVQRQLIGDILSRFERKGLQLAGAKLMRVTEQMAEKHYAEHQGKPFFGELVEFITSGPVFAMVWEGENVIEVTRQLIGKTNPKEALPGTIRGDYGMFVG 111

HSP 2 Score: 39.2762 bits (90), Expect = 2.047e-39
Identity = 18/37 (48.65%), Postives = 28/37 (75.68%), Query Frame = 1

Query:  406 NIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 513
            NIIHGSDS+ESA++EI ++F +   +++Q  +  WIY
Sbjct:  113 NIIHGSDSLESAEREINIFFKNEELVSYQQLMAGWIY 149

[Close]

BLAST of CK935645 vs. ExPASy Swiss-Prot
Match: NDK_BACHD (Nucleoside diphosphate kinase OS=Bacillus halodurans GN=ndk PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.669e-39
Identity = 67/107 (62.62%), Postives = 85/107 (79.44%), Query Frame = 2

Query:   77 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAI 397
            ME+T++MIKPDGVQR L+GEI+ RFEKKGF+L G KLMTV +  AE HY +   +PFFG L+++ITSGPV AM+WEGE V+ T R ++GATNPA + PGTIRGD  +
Sbjct:    1 MERTYLMIKPDGVQRNLIGEIVSRFEKKGFTLIGAKLMTVTKEQAETHYAEHKERPFFGELVDFITSGPVFAMVWEGENVIATARKMMGATNPADAEPGTIRGDFGV 107

HSP 2 Score: 35.039 bits (79), Expect = 2.669e-39
Identity = 15/36 (41.67%), Postives = 25/36 (69.44%), Query Frame = 1

Query:  406 NIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWI 510
            N+IHGSDS ESA++EI ++F    +N +   ++ W+
Sbjct:  112 NVIHGSDSPESAKREIDIFFDSSELNEYDKVVNRWV 147

[Close]

BLAST of CK935645 vs. ExPASy Swiss-Prot
Match: NDK_BACHK (Nucleoside diphosphate kinase OS=Bacillus thuringiensis subsp. konkukian GN=ndk PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.478e-39
Identity = 64/107 (59.81%), Postives = 82/107 (76.64%), Query Frame = 2

Query:   77 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAI 397
            ME+TF+M+KPDGVQR  +GEI+ RFEKKGF L G KLM V    A +HY + + KPFFG L+++ITSGPV AM+W+GEGVV T R ++G T P ++APGTIRGD  +
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGV 107

HSP 2 Score: 40.0466 bits (92), Expect = 3.478e-39
Identity = 17/37 (45.95%), Postives = 28/37 (75.68%), Query Frame = 1

Query:  406 NIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 513
            NIIHGSDS+ESA++EI ++F +   +++   ++ WIY
Sbjct:  112 NIIHGSDSLESAEREIGIFFKEEELVDYSKLMNEWIY 148

[Close]

BLAST of CK935645 vs. ExPASy Swiss-Prot
Match: NDK_BACCZ (Nucleoside diphosphate kinase OS=Bacillus cereus (strain ZK / E33L) GN=ndk PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.478e-39
Identity = 64/107 (59.81%), Postives = 82/107 (76.64%), Query Frame = 2

Query:   77 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAI 397
            ME+TF+M+KPDGVQR  +GEI+ RFEKKGF L G KLM V    A +HY + + KPFFG L+++ITSGPV AM+W+GEGVV T R ++G T P ++APGTIRGD  +
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGV 107

HSP 2 Score: 40.0466 bits (92), Expect = 3.478e-39
Identity = 17/37 (45.95%), Postives = 28/37 (75.68%), Query Frame = 1

Query:  406 NIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 513
            NIIHGSDS+ESA++EI ++F +   +++   ++ WIY
Sbjct:  112 NIIHGSDSLESAEREIGIFFKEEELVDYSKLMNEWIY 148

[Close]

BLAST of CK935645 vs. ExPASy Swiss-Prot
Match: NDK_BACAN (Nucleoside diphosphate kinase OS=Bacillus anthracis GN=ndk PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.478e-39
Identity = 64/107 (59.81%), Postives = 82/107 (76.64%), Query Frame = 2

Query:   77 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAI 397
            ME+TF+M+KPDGVQR  +GEI+ RFEKKGF L G KLM V    A +HY + + KPFFG L+++ITSGPV AM+W+GEGVV T R ++G T P ++APGTIRGD  +
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGV 107

HSP 2 Score: 40.0466 bits (92), Expect = 3.478e-39
Identity = 17/37 (45.95%), Postives = 28/37 (75.68%), Query Frame = 1

Query:  406 NIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 513
            NIIHGSDS+ESA++EI ++F +   +++   ++ WIY
Sbjct:  112 NIIHGSDSLESAEREIGIFFKEEELVDYSKLMNEWIY 148

[Close]

BLAST of CK935645 vs. ExPASy Swiss-Prot
Match: NDKC_DICDI (Nucleoside diphosphate kinase, cytosolic OS=Dictyostelium discoideum GN=ndkC-1 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 4.520e-39
Identity = 66/117 (56.41%), Postives = 84/117 (71.79%), Query Frame = 2

Query:   56 VSLNLKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 406
            +S N    E+TF+ +KPDGV RGLVGEII R+EKKGF L GLK +   +  AE HY +   +PFFG L+ +ITSGPVVAM++EG+GVV + R +IG TNP  SAPG+IRGD  +  G
Sbjct:    1 MSTNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVG 117

HSP 2 Score: 43.8986 bits (102), Expect = 4.520e-39
Identity = 21/37 (56.76%), Postives = 26/37 (70.27%), Query Frame = 1

Query:  406 NIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 516
            NIIHGSDSVESA +EIALWF    +  +   +P +YE
Sbjct:  119 NIIHGSDSVESANREIALWFKPEELLTEVKPNPNLYE 155

The following BLAST results are available for this feature:

BLAST of CK935645 vs. ExPASy Swiss-Prot

BLAST of CK935645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
NDK_SYNJA	7.102e-40	58.18	Nucleoside diphosphate kinase OS=Synechococcus sp....	[more]
NDK_SYNSC	1.206e-39	62.39	Nucleoside diphosphate kinase OS=Synechococcus sp....	[more]
NDK_BACC1	1.207e-39	59.81	Nucleoside diphosphate kinase OS=Bacillus cereus (...	[more]
NDK_BACCR	1.572e-39	59.81	Nucleoside diphosphate kinase OS=Bacillus cereus (...	[more]
NDK_BACSU	2.047e-39	60.00	Nucleoside diphosphate kinase OS=Bacillus subtilis...	[more]
NDK_BACHD	2.669e-39	62.62	Nucleoside diphosphate kinase OS=Bacillus halodura...	[more]
NDK_BACHK	3.478e-39	59.81	Nucleoside diphosphate kinase OS=Bacillus thuringi...	[more]
NDK_BACCZ	3.478e-39	59.81	Nucleoside diphosphate kinase OS=Bacillus cereus (...	[more]
NDK_BACAN	3.478e-39	59.81	Nucleoside diphosphate kinase OS=Bacillus anthraci...	[more]
NDKC_DICDI	4.520e-39	56.41	Nucleoside diphosphate kinase, cytosolic OS=Dictyo...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004553_C05 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_C05 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK935645 ID=CK935645; Name=CK935645; organism=Citrus sinensis; type=EST; length=677bp
GGGGATTCTCTCGCATGTGTGCTGTGCTATTTCACTCAATTCTCAAAACA
AGTTGGTTTCTCTGAATCTCAAAGAAATGGAACAAACTTTCATCATGATC
AAGCCCGATGGGGTCCAAAGAGGCCTTGTTGGTGAAATCATCATCAGATT
TGAGAAGAAGGGTTTCTCTTTGAAGGGTTTGAAGCTTATGACTGTGGACC
GCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCATCGAAGCCTTTCTTT
GGTTCTCTGATTGAGTACATTACCTCTGGTCCTGTTGTTGCTATGATTTG
GGAGGGTGAAGGCGTTGTTAAGACTGGCCGCACTATTATTGGAGCCACCA
ACCCTGCGCAGTCTGCTCCTGGAACCATCCGTGGTGATTTGGCTATCGTG
ACGGGAATATTATCCATGGAAGTGACTCAGTTGAGAGTGCCCAGAAAGAA
ATCGCCTTGTGGTTCCCTGATGGCCCTATTAACTGGCAGAGCAGCCTTCA
CCCTTGGATCTATGAGTAAACTAATGTTTGGTTGAGGAGCCTAATTGTTC
CTGCAGTTAGACTTATCCCTATCCCTATCCCTATTTCCTTATTTATGGTT
ACTCCTTGTTGGTGAACTGTTATGAAGTATTGAGTTAAATTGAGACCGAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA