CK935645

Overview
NameCK935645
Unique NameCK935645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:56..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935645 vs. ExPASy Swiss-Prot
Match: NDK_STACT (Nucleoside diphosphate kinase OS=Staphylococcus carnosus (strain TM300) GN=ndk PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 8.312e-38
Identity = 66/110 (60.00%), Postives = 80/110 (72.73%), Query Frame = 2
Query:   77 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 406
            ME+TF+MIKPDGVQR LVGEII R EKKG  L G K MTV +  AE HY + + KPF+  L+ +ITS PV AM+ EGE VV+  R +IG TNP ++APGTIRGDL +  G
Sbjct:    1 MERTFLMIKPDGVQRKLVGEIITRLEKKGLKLVGGKFMTVSKEKAETHYGEHADKPFYEGLVSFITSAPVFAMVVEGENVVEVTRNMIGKTNPTEAAPGTIRGDLGLTVG 110          

HSP 2 Score: 44.2838 bits (103), Expect = 8.312e-38
Identity = 19/38 (50.00%), Postives = 29/38 (76.32%), Query Frame = 1
Query:  406 NIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 516
            N+IHGSDSVESA++EI+LWF    ++ + ++   W+YE
Sbjct:  112 NVIHGSDSVESAKREISLWFEPNELSVYTANDEEWLYE 149          
BLAST of CK935645 vs. ExPASy Swiss-Prot
Match: NDK_PROMM (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9313) GN=ndk PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.082e-37
Identity = 66/110 (60.00%), Postives = 84/110 (76.36%), Query Frame = 2
Query:   77 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 406
            ME+TF+ IKPDGVQRGLVGEI+ RFE+KGF L GLK +T  R  A +HY     +PFF  L+++ITSGPV+AM+WEG+GV+ + R +IGAT P  + PGTIRGDLA+  G
Sbjct:    3 MERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQVTPSRDLAGEHYGVHRERPFFAGLVDFITSGPVIAMVWEGDGVIASARKLIGATKPLDAEPGTIRGDLAVNIG 112          

HSP 2 Score: 36.1946 bits (82), Expect = 1.082e-37
Identity = 18/38 (47.37%), Postives = 22/38 (57.89%), Query Frame = 1
Query:  406 NIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 516
            N+IHGSD  ++AQ EI LWF    +N W  S   W  E
Sbjct:  114 NVIHGSDGPDTAQFEINLWFSAEELNAWTPSDQSWRIE 151          
BLAST of CK935645 vs. ExPASy Swiss-Prot
Match: NDK_BRUMA (Nucleoside diphosphate kinase OS=Brugia malayi GN=NDK PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.410e-37
Identity = 60/109 (55.05%), Postives = 80/109 (73.39%), Query Frame = 2
Query:   80 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 406
            E+TFI IKPD VQRGL+G+I  RFE++G+ L  +K++   +   E HY++L  KPFF  L+ Y++SGPV+AM+WEG  VVK  R ++GATNP  S PGTIRGD +I TG
Sbjct:    6 ERTFICIKPDAVQRGLIGKIFERFEQRGYKLVAMKMLKATKSHLEIHYQELQGKPFFNDLVGYMSSGPVIAMVWEGLDVVKQARQMLGATNPLNSMPGTIRGDFSIQTG 114          

HSP 2 Score: 45.0542 bits (105), Expect = 1.410e-37
Identity = 19/38 (50.00%), Postives = 26/38 (68.42%), Query Frame = 1
Query:  406 NIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 516
            NI+HGSDS+ SA++EI  WF P+    W S+   W+YE
Sbjct:  116 NIVHGSDSLPSAEREITHWFKPEELCEWSSATATWVYE 153          
BLAST of CK935645 vs. ExPASy Swiss-Prot
Match: NDK_PROM1 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain NATL1A) GN=ndk PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.411e-37
Identity = 66/110 (60.00%), Postives = 84/110 (76.36%), Query Frame = 2
Query:   77 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 406
            +E+TF+ IKPDGVQRGL+ EI+ RFE KGF L GLK +T  +  AEKHY     +PFF  L+++ITSGPVVAM+WEGEGV+ + R +IGAT P ++ PGTIRGDLA+  G
Sbjct:    3 LERTFVAIKPDGVQRGLIAEILGRFETKGFKLVGLKQLTPSKELAEKHYGVHKDRPFFSGLVDFITSGPVVAMVWEGEGVIASARKLIGATKPLEAEPGTIRGDLAVNIG 112          

HSP 2 Score: 34.6538 bits (78), Expect = 1.411e-37
Identity = 16/38 (42.11%), Postives = 22/38 (57.89%), Query Frame = 1
Query:  406 NIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 516
            N+IHGSD  ++A  EI LWF +   ++W  S   W  E
Sbjct:  114 NVIHGSDGSDTAVFEINLWFQENELVDWNPSDQAWRVE 151          
BLAST of CK935645 vs. ExPASy Swiss-Prot
Match: NDK_SCHPO (Nucleoside diphosphate kinase OS=Schizosaccharomyces pombe GN=ndk1 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.411e-37
Identity = 61/109 (55.96%), Postives = 77/109 (70.64%), Query Frame = 2
Query:   80 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 406
            EQTFI +KPD VQRGL+G II +FE KG+ L+ LK +   R   E+HY +   KPF+  L+ ++ SGPV AMIWEG+  VKTGR ++GA+NP  SAPGTIRGD  I  G
Sbjct:    4 EQTFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKLVGFMASGPVCAMIWEGKQAVKTGRLMLGASNPLDSAPGTIRGDYGIDLG 112          

HSP 2 Score: 46.9802 bits (110), Expect = 1.411e-37
Identity = 20/38 (52.63%), Postives = 26/38 (68.42%), Query Frame = 1
Query:  406 NIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 516
            N+ HGSDS+ESA +EI LWF    I  +  ++ PWIYE
Sbjct:  114 NVCHGSDSIESANREIKLWFQPSEIQVYDRTIEPWIYE 151          
BLAST of CK935645 vs. ExPASy Swiss-Prot
Match: NDK3_MOUSE (Nucleoside diphosphate kinase 3 OS=Mus musculus GN=Nme3 PE=2 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 1.830e-37
Identity = 58/109 (53.21%), Postives = 77/109 (70.64%), Query Frame = 2
Query:   80 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 406
            E+TF+ +KPDGVQR LVGEI+ RFE+KGF L  LKL+        +HY +L  KPF+  L++Y++SGPVVAM+W+G  VV   R +IGAT+P  + PGTIRGD  +  G
Sbjct:   22 ERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYVELREKPFYSRLVKYMSSGPVVAMVWQGLDVVHASRALIGATDPGDAMPGTIRGDFCMEVG 130          

HSP 2 Score: 49.6766 bits (117), Expect = 1.830e-37
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 1
Query:  406 NIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 516
            N+IHGSDSVESA +EIALWF +   + W+ S   W+YE
Sbjct:  132 NVIHGSDSVESAHREIALWFREAELLCWEDSAGHWLYE 169          
BLAST of CK935645 vs. ExPASy Swiss-Prot
Match: NDK_PROMT (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=ndk PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.838e-37
Identity = 65/110 (59.09%), Postives = 84/110 (76.36%), Query Frame = 2
Query:   77 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 406
            +E+TF+ IKPDGVQRGL+ EI+ RFE KGF L GLK +T  +  AEKHY     +PFF  L+++ITSGPV+AM+WEGEGV+ + R +IGAT P ++ PGTIRGDLA+  G
Sbjct:    3 LERTFVAIKPDGVQRGLIAEILGRFETKGFKLVGLKQLTPSKELAEKHYGVHKDRPFFSGLVDFITSGPVIAMVWEGEGVIASARKLIGATKPLEAEPGTIRGDLAVNIG 112          

HSP 2 Score: 34.6538 bits (78), Expect = 1.838e-37
Identity = 16/38 (42.11%), Postives = 22/38 (57.89%), Query Frame = 1
Query:  406 NIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 516
            N+IHGSD  ++A  EI LWF +   ++W  S   W  E
Sbjct:  114 NVIHGSDGSDTAVFEINLWFQENELVDWNPSDQAWRVE 151          
BLAST of CK935645 vs. ExPASy Swiss-Prot
Match: NDK_SYMTH (Nucleoside diphosphate kinase OS=Symbiobacterium thermophilum GN=ndk PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.838e-37
Identity = 63/106 (59.43%), Postives = 78/106 (73.58%), Query Frame = 2
Query:   77 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLA 394
            ME++F+M+KPDGVQRGL+GE+I R E++G  L   KLM V R  AE+HY  L  KPFF SLIE+ITSGPV+AM+WEG   +   R  +GATNPA + PGTIR D A
Sbjct:    1 MERSFVMVKPDGVQRGLIGEVISRLERRGLKLVAAKLMRVSRELAEEHYAQLKDKPFFPSLIEFITSGPVMAMVWEGPNAISIIRKTMGATNPANAEPGTIRADFA 106          

HSP 2 Score: 41.2022 bits (95), Expect = 1.838e-37
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 1
Query:  406 NIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIY 513
            N++HGSD  ESA++EI LWF +   ++  S+  WI+
Sbjct:  112 NVVHGSDGPESAEREIRLWFGEVEPSYSRSVDRWIF 147          
BLAST of CK935645 vs. ExPASy Swiss-Prot
Match: NDK_PROM3 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9303) GN=ndk PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.117e-37
Identity = 65/110 (59.09%), Postives = 84/110 (76.36%), Query Frame = 2
Query:   77 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 406
            +E+TF+ IKPDGVQRGLVGEI+ RFE+KGF L GLK +   R  A +HY     +PFF  L+++ITSGPVVAM+WEG+GV+ + R +IGAT P ++ PGTIRGDLA+  G
Sbjct:    3 VERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLAPSRELAGEHYGVHRERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEAEPGTIRGDLAVNIG 112          

HSP 2 Score: 36.5798 bits (83), Expect = 3.117e-37
Identity = 18/38 (47.37%), Postives = 22/38 (57.89%), Query Frame = 1
Query:  406 NIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 516
            N+IHGSD  ++AQ EI LWF    +N W  S   W  E
Sbjct:  114 NVIHGSDGPDTAQFEINLWFSPEELNAWTPSDQSWRVE 151          
BLAST of CK935645 vs. ExPASy Swiss-Prot
Match: NDK_BACLD (Nucleoside diphosphate kinase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=ndk PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.122e-37
Identity = 62/110 (56.36%), Postives = 82/110 (74.55%), Query Frame = 2
Query:   77 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 406
            ME+TF+M+KPDGVQR L+GEI++RFE+KG  L G KLM V    A +HY++ + KPFFG L+++ITSGPV AM+WEGE  +   R +IG TNP ++ PGTIRGD  +  G
Sbjct:    1 MEKTFVMVKPDGVQRQLIGEILLRFERKGLQLIGAKLMKVSEETAGEHYKEHNGKPFFGELVDFITSGPVFAMVWEGEDAIAVARQLIGKTNPKEALPGTIRGDFGMFVG 110          

HSP 2 Score: 36.5798 bits (83), Expect = 3.122e-37
Identity = 19/37 (51.35%), Postives = 25/37 (67.57%), Query Frame = 1
Query:  406 NIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIY 513
            NIIHGSDS ESA +EI L+F  D  +  +  ++ WIY
Sbjct:  112 NIIHGSDSPESAAREINLFFKEDELVEDEKLMNQWIY 148          
The following BLAST results are available for this feature:
BLAST of CK935645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_STACT8.312e-3860.00Nucleoside diphosphate kinase OS=Staphylococcus ca... [more]
NDK_PROMM1.082e-3760.00Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_BRUMA1.410e-3755.05Nucleoside diphosphate kinase OS=Brugia malayi GN=... [more]
NDK_PROM11.411e-3760.00Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_SCHPO1.411e-3755.96Nucleoside diphosphate kinase OS=Schizosaccharomyc... [more]
NDK3_MOUSE1.830e-3753.21Nucleoside diphosphate kinase 3 OS=Mus musculus GN... [more]
NDK_PROMT1.838e-3759.09Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_SYMTH1.838e-3759.43Nucleoside diphosphate kinase OS=Symbiobacterium t... [more]
NDK_PROM33.117e-3759.09Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_BACLD3.122e-3756.36Nucleoside diphosphate kinase OS=Bacillus lichenif... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004553_C05 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935645 ID=CK935645; Name=CK935645; organism=Citrus sinensis; type=EST; length=677bp
GGGGATTCTCTCGCATGTGTGCTGTGCTATTTCACTCAATTCTCAAAACA
AGTTGGTTTCTCTGAATCTCAAAGAAATGGAACAAACTTTCATCATGATC
AAGCCCGATGGGGTCCAAAGAGGCCTTGTTGGTGAAATCATCATCAGATT
TGAGAAGAAGGGTTTCTCTTTGAAGGGTTTGAAGCTTATGACTGTGGACC
GCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCATCGAAGCCTTTCTTT
GGTTCTCTGATTGAGTACATTACCTCTGGTCCTGTTGTTGCTATGATTTG
GGAGGGTGAAGGCGTTGTTAAGACTGGCCGCACTATTATTGGAGCCACCA
ACCCTGCGCAGTCTGCTCCTGGAACCATCCGTGGTGATTTGGCTATCGTG
ACGGGAATATTATCCATGGAAGTGACTCAGTTGAGAGTGCCCAGAAAGAA
ATCGCCTTGTGGTTCCCTGATGGCCCTATTAACTGGCAGAGCAGCCTTCA
CCCTTGGATCTATGAGTAAACTAATGTTTGGTTGAGGAGCCTAATTGTTC
CTGCAGTTAGACTTATCCCTATCCCTATCCCTATTTCCTTATTTATGGTT
ACTCCTTGTTGGTGAACTGTTATGAAGTATTGAGTTAAATTGAGACCGAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top