CK935651

Overview
NameCK935651
Unique NameCK935651
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935651_ssr24 microsatellite CK935651_ssr24:24..35. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4990 contig Csv1_Contig4990:148..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935651 vs. ExPASy Swiss-Prot
Match: ASK5_ARATH (SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK5 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.146e-40
Identity = 88/161 (54.66%), Postives = 113/161 (70.19%), Query Frame = 3
Query:   48 SKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRAASGVDDDLKAWDTDFVKVDQAT-LFDLILAANYLNIKSLLDLTCQTV-----ADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 512
            S KI LKSSDG++FE+DE VA +S  I HM+ED CA + IPL NVTSKIL  VI+YC+KHV++ +         ++DLK WD DF+K  + T LFD+++AANYLNI+SLLDLTC+TV     AD++ GKTP+EIR  FNI+ND T          NQWAF+
Sbjct:    2 STKIMLKSSDGKSFEIDEDVARKSIAINHMVEDGCATDVIPLRNVTSKILKIVIDYCEKHVKSKE---------EEDLKEWDADFMKTIETTILFDVMMAANYLNIQSLLDLTCKTVSDLLQADLLSGKTPDEIRAHFNIENDLTAEEVAKIREENQWAFQ 153          
BLAST of CK935651 vs. ExPASy Swiss-Prot
Match: ASK16_ARATH (SKP1-like protein 16 OS=Arabidopsis thaliana GN=ASK16 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.355e-40
Identity = 89/171 (52.05%), Postives = 113/171 (66.08%), Query Frame = 3
Query:   45 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHV--EASKSDDRAASGVD-------DDLKAWDTDFVK-VDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE*KDLK 527
            +S KI L SSD E+FEV+EAVA + + I HMI+DDCAD  IPL NVT  IL+ VIEYCKKHV  +   SDD   +  +       ++L+ WD +F+K  D  T+  LILA NYLN++ LL LTCQTVAD +K  +PEE+R+ FNI+ND+TP         N WAFE  DLK
Sbjct:    2 SSNKIVLTSSDDESFEVEEAVARKLKVIAHMIDDDCADKAIPLENVTGNILALVIEYCKKHVLDDVDDSDDSTEATSENVNEEAKNELRTWDAEFMKEFDMETVMKLILAVNYLNVQDLLGLTCQTVADHMKDMSPEEVRELFNIENDYTPEEEDAIRKENAWAFE--DLK 170          
BLAST of CK935651 vs. ExPASy Swiss-Prot
Match: SKP1A_DICDI (SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium discoideum GN=fpaA PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.688e-40
Identity = 85/152 (55.92%), Postives = 111/152 (73.03%), Query Frame = 3
Query:   57 ITLKSSDGEAFEVDEAVALESQTIKHMIED-DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRAASGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQW 503
            + L+SSD + FE+++ +A  S TIK+MIED   +D+ IPLPNVTS IL KV++YC+ H +  + + DD+      DD+  +D DF KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDFTP         N+W
Sbjct:    4 VKLESSDEKVFEIEKEIACMSVTIKNMIEDIGESDSPIPLPNVTSTILEKVLDYCRHHHQHPSPQGDDKKDEKRLDDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
BLAST of CK935651 vs. ExPASy Swiss-Prot
Match: SKP1B_DICDI (SCF ubiquitin ligase complex protein SKP1b OS=Dictyostelium discoideum GN=fpaB-1 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.267e-39
Identity = 85/152 (55.92%), Postives = 110/152 (72.37%), Query Frame = 3
Query:   57 ITLKSSDGEAFEVDEAVALESQTIKHMIED-DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRAASGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQW 503
            + L+SSD + FE+++ +A  S TIK+MIED   +D  IPLPNVTS IL KV++YC+ H +  + + DD+      DD+  +D DF KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDFTP         N+W
Sbjct:    4 VKLESSDEKVFEIEKEIACMSVTIKNMIEDIGESDAPIPLPNVTSTILEKVLDYCRHHHQHPSPQGDDKKDEKRLDDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
BLAST of CK935651 vs. ExPASy Swiss-Prot
Match: ASK19_ARATH (SKP1-like protein 19 OS=Arabidopsis thaliana GN=ASK19 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.815e-39
Identity = 89/189 (47.09%), Postives = 112/189 (59.26%), Query Frame = 3
Query:   45 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVE-----------ASKSD---------------------DRAASGVDDDLKAWDTDFVK-VDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 512
            +SKKI L SSDGE+F+V+E VA + Q + H+IEDDCA N IP+PNVT +IL+KVIEYCKKHVE           ++K D                     D  A    + L  WD  F+K  D  T+FD+ILAANYLN++ L DL  +T+AD IK  TPEE+R+ FNI+NDFTP         N W FE
Sbjct:    2 SSKKIVLTSSDGESFKVEEVVARKLQIVGHIIEDDCATNKIPIPNVTGEILAKVIEYCKKHVEDDDDVVETHESSTKGDKTVEEAKKKPDDVAVPESTEGDDEAEDKKEKLNEWDAKFMKDFDIKTIFDIILAANYLNVQGLFDLCSKTIADYIKDMTPEEVRELFNIENDFTPEEEEAIRNENAWTFE 190          
BLAST of CK935651 vs. ExPASy Swiss-Prot
Match: ASK18_ARATH (SKP1-like protein 18 OS=Arabidopsis thaliana GN=ASK18 PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 2.023e-37
Identity = 82/156 (52.56%), Postives = 100/156 (64.10%), Query Frame = 3
Query:   45 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRAASGVDDDLKAWDTDFV-KVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAF 509
            +S KI L SSDGE+FE+DEAVA +   I HM+ED+CA   IPL NVT  ILSK+IEY K HV     +D        +L +WD  F+ K+D  T+F +ILAANYLN + LL    QTVAD IK KTPEE+R+ FNI+NDFTP         N W F
Sbjct:    2 SSNKILLTSSDGESFEIDEAVARKFLIIVHMMEDNCAGEAIPLENVTGDILSKIIEYAKMHVNEPSEEDEDEE-AKKNLDSWDAKFMEKLDLETIFKIILAANYLNFEGLLGFASQTVADYIKDKTPEEVREIFNIENDFTPEEEEEIRKENAWTF 156          
BLAST of CK935651 vs. ExPASy Swiss-Prot
Match: ASK8_ARATH (SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.642e-37
Identity = 81/156 (51.92%), Postives = 106/156 (67.95%), Query Frame = 3
Query:   45 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRAASGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 512
            ++KKI LKSS+G+ FE++E  A + QTI HMIE +C DN I +  +TS+IL  VIEYC KH       D A    DDDL+ WD +F++ D++T+F L  AAN+LN KSLL L  QTVADMIKG TP+++R+ FNI+ND TP         N+WAFE
Sbjct:    2 STKKIMLKSSEGKTFEIEEETARQCQTIAHMIEAECTDNVILVLKMTSEILEMVIEYCNKH-----HVDAANPCSDDDLEKWDKEFMEKDKSTIFALTNAANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE 152          
BLAST of CK935651 vs. ExPASy Swiss-Prot
Match: ASK17_ARATH (SKP1-like protein 17 OS=Arabidopsis thaliana GN=ASK17 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.091e-34
Identity = 79/156 (50.64%), Postives = 99/156 (63.46%), Query Frame = 3
Query:   45 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRAASGVDDDLKAWDTDFVK-VDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAF 509
            +SKKI L SSD E FE+DEAVA + Q + HMI+DDCAD  I L NVT KIL+ +IEYCKKHV     DD  A    ++   WD +FVK +D  TLF L+ AA+YL +  L +L  Q +AD    KT  EIR+ FNI+ND+TP         N+WAF
Sbjct:    2 SSKKIVLTSSDDECFEIDEAVARKMQMVAHMIDDDCADKAIRLQNVTGKILAIIIEYCKKHV-----DDVEAK---NEFVTWDAEFVKNIDMDTLFKLLDAADYLIVIGLKNLIAQAIADYTADKTVNEIRELFNIENDYTPEEEEELRKKNEWAF 149          
BLAST of CK935651 vs. ExPASy Swiss-Prot
Match: SKP1_SCHPO (Suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe GN=skp1 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.039e-33
Identity = 77/156 (49.36%), Postives = 100/156 (64.10%), Query Frame = 3
Query:   54 KITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADN-GIPLPNVTSKILSKVIEYCKKHVEASKSDDRAASGV----DDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWA 506
            KI L SSD E F VD+ +A  S  IK+M+ED    N  IPLPNV+S +L KV+E+C+ H     S     S +      D+  WD  F+ VDQ  LF+++LA+NYL+IK LLD  C+TVA+MI+GK+PE+IRKTFNI NDFTP         N+WA
Sbjct:    3 KIKLISSDNEEFVVDQLIAERSMLIKNMLEDVGEINVPIPLPNVSSNVLRKVLEWCEHHKNDLYSGTEEESDIRLKKSTDIDEWDRKFMAVDQEMLFEIVLASNYLDIKPLLDTGCKTVANMIRGKSPEDIRKTFNIPNDFTPEEEEQIRKENEWA 158          
BLAST of CK935651 vs. ExPASy Swiss-Prot
Match: ASK7_ARATH (SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK7 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.523e-28
Identity = 67/121 (55.37%), Postives = 84/121 (69.42%), Query Frame = 3
Query:   45 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRAASGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 407
            ++KKI LKSSDG+ FE++E  A + QTI HMIE +C DN IP+ NVTS+IL  VIEYC KH       D A    D+DLK WD +F++ DQ T+F L+ AA  L+IKSLL L  QTVADM+
Sbjct:    2 STKKIMLKSSDGKMFEIEEETARQCQTIAHMIEAECTDNVIPVSNVTSEILEMVIEYCNKH-----HVDAANPCSDEDLKKWDKEFMEKDQYTIFHLMNAAYDLHIKSLLALAYQTVADMV 117          
The following BLAST results are available for this feature:
BLAST of CK935651 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ASK5_ARATH1.146e-4054.66SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK... [more]
ASK16_ARATH4.355e-4052.05SKP1-like protein 16 OS=Arabidopsis thaliana GN=AS... [more]
SKP1A_DICDI5.688e-4055.92SCF ubiquitin ligase complex protein SKP1a OS=Dict... [more]
SKP1B_DICDI1.267e-3955.92SCF ubiquitin ligase complex protein SKP1b OS=Dict... [more]
ASK19_ARATH4.815e-3947.09SKP1-like protein 19 OS=Arabidopsis thaliana GN=AS... [more]
ASK18_ARATH2.023e-3752.56SKP1-like protein 18 OS=Arabidopsis thaliana GN=AS... [more]
ASK8_ARATH2.642e-3751.92SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK... [more]
ASK17_ARATH6.091e-3450.64SKP1-like protein 17 OS=Arabidopsis thaliana GN=AS... [more]
SKP1_SCHPO1.039e-3349.36Suppressor of kinetochore protein 1 OS=Schizosacch... [more]
ASK7_ARATH6.523e-2855.37SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004553_C11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935651 ID=CK935651; Name=CK935651; organism=Citrus sinensis; type=EST; length=750bp
GGGAGGGTTTCAAGAGTGTGTTGGATCGATCGATCAGAATGTCAACGAGT
AAGAAAATCACGCTGAAGAGCTCGGATGGAGAGGCGTTCGAGGTCGATGA
AGCAGTGGCGTTGGAATCGCAGACGATCAAGCATATGATTGAGGACGATT
GCGCCGACAACGGAATCCCTTTGCCTAACGTTACCAGTAAGATCCTCTCT
AAGGTCATCGAGTACTGCAAGAAGCACGTCGAGGCATCTAAGTCCGACGA
TCGGGCCGCTAGCGGCGTCGATGATGATCTCAAGGCTTGGGATACCGATT
TCGTCAAAGTCGATCAGGCCACTCTCTTTGATCTTATTCTTGCGGCAAAC
TACCTGAACATCAAGAGCTTGCTGGACTTAACTTGCCAGACTGTTGCAGA
CATGATTAAGGGAAAGACTCCAGAGGAGATCCGCAAGACATTCAATATCA
AGAACGACTTTACCCCAGAAGAGGAGGAAGAGGTTCGTCGGGAGAATCAG
TGGGCTTTTGAGTGAAAGGATCTCAAATGACCAATTTGTAATTGTGTCTT
TTCTTTTTTGTTTTGCCTTCTTTTTGTTGTTGCTGCTGACTCAAATGTCT
TTAGCTGGTAAAAGCATCAAACCATTATTGTTTTAATGTCATATCATCCC
AACCTTCTCTGTATCATTAATTGTGAAGTCCTTTTGGATCTTGTTAGTGA
TGTTAATATGGTATATGTTCTTCCGTACCCATTAGTTTGTTTTCTCATGC
back to top