CK935656

Overview
NameCK935656
Unique NameCK935656
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935656 vs. ExPASy Swiss-Prot
Match: PR1A_HORVU (Pathogenesis-related protein 1A/1B OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.485e-18
Identity = 58/133 (43.61%), Postives = 76/133 (57.14%), Query Frame = 2
Query:   77 SATILLLLSSYAKASFILT--LVNNCPFPVWPAIQPNAGHPVLERGGFYLHSLTHRSFPAPAQHWSGRIWARTGCTYAHGKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSCGVSLVDGFNVPM 469
            SA + LLL+ +A  +   T  + NNC   +WPA     G PV   GGF L S    S   PA   +GRIWARTGC++  G  SC TGDCG +L C+ L G  PATLA+F++  G        +S++DGFN+ M
Sbjct:    4 SAVLFLLLAVFAAGASAATFNIKNNCGSTIWPA-----GIPV--GGGFELGSGQTSSINVPAGTQAGRIWARTGCSFNGGSGSCQTGDCGGQLSCS-LSGQPPATLAEFTIGGGSTQ-DFYDISVIDGFNLAM 127          
BLAST of CK935656 vs. ExPASy Swiss-Prot
Match: RST3_AVESA (Thaumatin-like pathogenesis-related protein 3 OS=Avena sativa GN=RASTL-3 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.371e-18
Identity = 59/150 (39.33%), Postives = 82/150 (54.67%), Query Frame = 2
Query:   77 SATILLLLSSYAKASFILT--LVNNCPFPVWPAIQPNAGHPVLERGGFYLHSLTHRSFPAPAQHWSGRIWARTGCTYAHGKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSCGVSLVDGFNVPMTVTPHEGKGV-CPVVGC 517
            SA + LLL+ +A  +   T  + NNC F VWPA     G PV   GGF L+S    +   PA   +GRIW RTGC++ +G+ SC TGDC   L C   G   PATLA++++  G  D     +S++DG+N+ M  +   G  + C   GC
Sbjct:    5 SAVLFLLLAVFAAGASAATFRITNNCGFTVWPA-----GIPV--GGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFNNGRGSCATGDCAGALSCTLSG--QPATLAEYTI-GGSQDFYD--ISVIDGYNLAMDFSCSTGVALKCRDSGC 142          
BLAST of CK935656 vs. ExPASy Swiss-Prot
Match: RST1_AVESA (Thaumatin-like pathogenesis-related protein 1 OS=Avena sativa GN=RASTL-1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.627e-18
Identity = 56/133 (42.11%), Postives = 76/133 (57.14%), Query Frame = 2
Query:   77 SATILLLLSSYAKASFILT--LVNNCPFPVWPAIQPNAGHPVLERGGFYLHSLTHRSFPAPAQHWSGRIWARTGCTYAHGKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSCGVSLVDGFNVPM 469
            SA + LLL+ +A  +   T  + NNC F VWPA     G PV   GGF L+S    +   PA   +GRIW RTGC++ +G+ SC TGDC   L C   G   PATLA++++  G  D     +S++DGFN+ M
Sbjct:    5 SAVLFLLLAVFAAGASAATFRITNNCGFTVWPA-----GIPV--GGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFNNGRGSCATGDCAGALSCTLSG--QPATLAEYTI-GGSQDFYD--ISVIDGFNLAM 125          
BLAST of CK935656 vs. ExPASy Swiss-Prot
Match: RST2_AVESA (Thaumatin-like pathogenesis-related protein 2 OS=Avena sativa GN=RASTL-2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.240e-17
Identity = 54/133 (40.60%), Postives = 75/133 (56.39%), Query Frame = 2
Query:   77 SATILLLLSSYAKASFILT--LVNNCPFPVWPAIQPNAGHPVLERGGFYLHSLTHRSFPAPAQHWSGRIWARTGCTYAHGKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSCGVSLVDGFNVPM 469
            SA +  LL+ +A  +   T  + NNC F VWPA     G PV   GGF L+S    +   PA   +GRIW RTGC++ +G+ SC TGDC   L C   G   PATLA++++  G  D     +S++DG+N+ M
Sbjct:    5 SAVLFFLLAVFAAGASAATFRITNNCGFTVWPA-----GIPV--GGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFNNGRGSCATGDCAGALSCTLSG--QPATLAEYTI-GGSQDFYD--ISVIDGYNLAM 125          
BLAST of CK935656 vs. ExPASy Swiss-Prot
Match: TLP_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os12g0628600 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.622e-15
Identity = 52/147 (35.37%), Postives = 75/147 (51.02%), Query Frame = 2
Query:   53 ASTSPIFISATILLLLSSYAKASFILTLVNNCPFPVWPAIQPNAGHPVLERGGFYLHSLTHRSFPAPAQHWSGRIWARTGCTY-AHGKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSCGVSLVDGFNVPMTVTPHEG 490
            A++S + +   +  L +  A A+   T+ N C F VWPA  P  G   L  G  +       +   PA   SGR+W RTGC++   G+ SC TGDC   L C  L G  P TLA+F++  G  D     +S++DG+NV M+ +   G
Sbjct:    5 ATSSAVLVVVLVATLAAGGANAA-TFTITNRCSFTVWPAATPVGGGVQLSPGQTW-------TINVPAGTSSGRVWGRTGCSFDGSGRGSCATGDCAGALSCT-LSGQKPLTLAEFTI-GGSQDFYD--LSVIDGYNVAMSFSCSSG 139          
BLAST of CK935656 vs. ExPASy Swiss-Prot
Match: RST4_AVESA (Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa GN=RASTL-4 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.622e-15
Identity = 52/134 (38.81%), Postives = 71/134 (52.99%), Query Frame = 2
Query:   77 SATILLLLSSYAKASF---ILTLVNNCPFPVWPAIQPNAGHPVLERGGFYLHSLTHRSFPAPAQHWSGRIWARTGCTYAHGKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSCGVSLVDGFNVPM 469
            S+T+L LL +   AS      T+ NNC + VWPA  P  G   L++G  +       +   PA   SGRIW RTGC++  G  SC TGDC   L C   G   PATLA+FS+   H+      +S++D +N+ M
Sbjct:    4 SSTVLFLLLAVFAASASAATFTITNNCGYTVWPAAIPVGGGQQLDQGQTW-------TLNVPAGTNSGRIWGRTGCSFNGGSGSCQTGDCAGALSCTLSG--QPATLAEFSIGGEHDYYD---ISVIDVYNLAM 125          
The following BLAST results are available for this feature:
BLAST of CK935656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
PR1A_HORVU1.485e-1843.61Pathogenesis-related protein 1A/1B OS=Hordeum vulg... [more]
RST3_AVESA7.371e-1839.33Thaumatin-like pathogenesis-related protein 3 OS=A... [more]
RST1_AVESA9.627e-1842.11Thaumatin-like pathogenesis-related protein 1 OS=A... [more]
RST2_AVESA6.240e-1740.60Thaumatin-like pathogenesis-related protein 2 OS=A... [more]
TLP_ORYSJ2.622e-1535.37Thaumatin-like protein OS=Oryza sativa subsp. japo... [more]
RST4_AVESA2.622e-1538.81Thaumatin-like pathogenesis-related protein 4 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_B10 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935656 ID=CK935656; Name=CK935656; organism=Citrus sinensis; type=EST; length=843bp
GGGGACACAACACCTGNNNTTGTTGTTTTTAGTTTTTCTTAAAACGAAAA
TGGCCTCAACTTCGCCCATTTTCATTTCAGCAACTATCCTTCTTCTCCTC
AGCTCCTACGCCAAAGCAAGCTTCATACTGACCCTAGTCAACAACTGCCC
CTTCCCCGTCTGGCCGGCCATCCAGCCCAACGCCGGCCACCCAGTCCTCG
AACGTGGCGGCTTCTATCTCCATAGCCTCACCCACCGCTCCTTCCCCGCT
CCGGCCCAGCACTGGTCGGGCCGGATCTGGGCCAGAACCGGCTGCACCTA
CGCCCACGGCAAATTCTCCTGCGTCACGGGCGACTGCGGCCACCGCTTGG
AATGCAACGGACTCGGCGGGGCGACTCCAGCCACCCTGGCCCAGTTCAGC
CTCCACCACGGCCACAACGACCTCTCCTCCTGCGGCGTCTCTCTAGTCGA
CGGCTTCAACGTCCCCATGACTGTCACCCCGCACGAGGGCAAGGGCGTCT
GTCCGGTAGTGGGTTGTCGCGCTGACCTGCTAGCCACGTGTCCTCAGAAC
CTGCAGGTGAGGTCACCGCCGGGTCACGGCCGCGTGGTGGCATGTAAGAG
TGGGTGTGAGGCGTTTGGTACGGACGAGCTGTGTTGTAGGAACCATTACA
ACAGTCCGCAGACATGCCGGGCTTCGAGCTTTTCGGAGTTCTTCAAGCAC
GCTTGTCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCA
TGACTGCTCCTCGCCACGTGAGCTAAAAGTTATTTTCTGTCACTAGAGAA
GCATGAGAATAATAATAAGCTGGAGCATNCAGCTTCACAGTGC
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