CK935672

Overview
NameCK935672
Unique NameCK935672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3221 contig Csv1_Contig3221:33..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL26_LITLI (60S ribosomal protein L26 OS=Littorina littorea GN=RPL26 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.182e-35
Identity = 74/106 (69.81%), Postives = 90/106 (84.91%), Query Frame = 1
Query:   73 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387
            MK+N  VSS R KNRK HF APS +RR +MS+P+S +LRQKYN RSMP+RKDDEVQVVRG +KG++ GKVVQVYR+K+V+HIERI REK NG+TV VGI+ SKV+I
Sbjct:    1 MKFNKMVSSDRGKNRKRHFNAPSHMRRKIMSSPMSKELRQKYNCRSMPIRKDDEVQVVRGHFKGQQVGKVVQVYRKKFVVHIERIQREKANGATVYVGIHPSKVLI 106          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL26_SCHPO (60S ribosomal protein L26 OS=Schizosaccharomyces pombe GN=rpl26 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.062e-34
Identity = 68/106 (64.15%), Postives = 92/106 (86.79%), Query Frame = 1
Query:   73 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390
            MK++  V+SSRRK RKAHF APSSVRR+LMSAPLS +LR++Y +RS+PVR+DD++ V+RG+ KGREGK+  VYR+K+++ IER+TREK NG++  VGI++SKVVIT
Sbjct:    1 MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRGSNKGREGKITSVYRKKFLLLIERVTREKANGASAPVGIDASKVVIT 106          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL26_CHICK (60S ribosomal protein L26 (Fragment) OS=Gallus gallus GN=RPL26 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.134e-31
Identity = 67/90 (74.44%), Postives = 81/90 (90.00%), Query Frame = 1
Query:  124 HFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390
            HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+ SKVVIT
Sbjct:    1 HFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 90          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL26_DICDI (60S ribosomal protein L26 OS=Dictyostelium discoideum GN=rpl26 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.755e-31
Identity = 67/106 (63.21%), Postives = 82/106 (77.36%), Query Frame = 1
Query:   73 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390
            MK N  VSSSRRK+RKAHFTA S  RRI MSA LS DLR KYNVRS+P+RKDDEV+VV G  K  EGKVV  YR+K+VIHI+++T  K NG+T  +G++ S V++T
Sbjct:    1 MKRNTNVSSSRRKSRKAHFTASSGERRIRMSAALSHDLRTKYNVRSLPIRKDDEVRVVCGDNKNHEGKVVACYRKKYVIHIDKLTVTKTNGNTAQIGVSPSNVILT 106          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL26_CAEEL (60S ribosomal protein L26 OS=Caenorhabditis elegans GN=rpl-26 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.110e-31
Identity = 64/106 (60.38%), Postives = 85/106 (80.19%), Query Frame = 1
Query:   73 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390
            MK NP VSS   K+RKAHF APS  RR +MSAPL+ +LR K+ +R++P+R DDEV V+RG +KG  G+V++ YR+K+VIHI++ITREK NGSTV++GI+ SKV IT
Sbjct:    1 MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRGRHKGNTGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSKVAIT 106          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL26B_YEAST (60S ribosomal protein L26-B OS=Saccharomyces cerevisiae GN=RPL26B PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.295e-28
Identity = 57/100 (57.00%), Postives = 84/100 (84.00%), Query Frame = 1
Query:   91 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390
            VSS RRK RKA+FTAPSS RR+L+SAPLS +LR +Y ++++P+R+DDEV VVRG+ KG+EGK+  VYR K+ + ++++T+EKVNG++V + ++ SK+VIT
Sbjct:    8 VSSDRRKARKAYFTAPSSERRVLLSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKVNGASVPINLHPSKLVIT 107          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL26A_YEAST (60S ribosomal protein L26-A OS=Saccharomyces cerevisiae GN=RPL26A PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.295e-28
Identity = 57/100 (57.00%), Postives = 84/100 (84.00%), Query Frame = 1
Query:   91 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390
            VSS RRK RKA+FTAPSS RR+L+SAPLS +LR +Y ++++P+R+DDEV VVRG+ KG+EGK+  VYR K+ + ++++T+EKVNG++V + ++ SK+VIT
Sbjct:    8 VSSDRRKARKAYFTAPSSQRRVLLSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKVNGASVPINLHPSKLVIT 107          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_PYRHO (50S ribosomal protein L24P OS=Pyrococcus horikoshii GN=rpl24p PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.175e-19
Identity = 51/105 (48.57%), Postives = 73/105 (69.52%), Query Frame = 1
Query:   73 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387
            MK N   S   RK RK  + AP  VR+ +MSAPLS +LR+KY VR++PVR  D+V+++RG +KG EGKVV+V  +++ I++E +T  KVNG+ V   I+ S V+I
Sbjct:    1 MKMN---SKQPRKQRKFLYNAPLHVRQKMMSAPLSKELREKYKVRNLPVRVGDKVRIMRGDFKGYEGKVVEVDLKRYRIYVEGVTLRKVNGTEVFYPIHPSNVMI 102          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_PYRFU (50S ribosomal protein L24P OS=Pyrococcus furiosus GN=rpl24p PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.453e-19
Identity = 49/98 (50.00%), Postives = 68/98 (69.39%), Query Frame = 1
Query:   94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387
            S   RK RK  + AP  VR+ LMSAPLS +LR+KY VR++PVR  D+V+++RG YKG EGKVV+V  +++ I++E  T  K NG+ V   I+ S V+I
Sbjct:    5 SKQPRKQRKFLYNAPLHVRQKLMSAPLSRELREKYKVRNLPVRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMI 102          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_PYRKO (50S ribosomal protein L24P OS=Pyrococcus kodakaraensis GN=rpl24p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.616e-18
Identity = 45/94 (47.87%), Postives = 68/94 (72.34%), Query Frame = 1
Query:  106 RKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387
            RK RK  + AP  +R  +MSAPLS +LR+KY VR++P+R  D+V+V+RG +KG EGKVV+V  R++ IH+E +T +K +G+ V   ++ S V+I
Sbjct:    9 RKQRKFLYNAPLHLRGKIMSAPLSKELREKYGVRNLPIRVGDKVKVMRGDFKGVEGKVVEVDLRRYRIHVEGVTHKKTDGTEVFYPLHPSNVMI 102          
The following BLAST results are available for this feature:
BLAST of CK935672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RL26_LITLI3.182e-3569.8160S ribosomal protein L26 OS=Littorina littorea GN... [more]
RL26_SCHPO2.062e-3464.1560S ribosomal protein L26 OS=Schizosaccharomyces p... [more]
RL26_CHICK2.134e-3174.4460S ribosomal protein L26 (Fragment) OS=Gallus gal... [more]
RL26_DICDI4.755e-3163.2160S ribosomal protein L26 OS=Dictyostelium discoid... [more]
RL26_CAEEL8.110e-3160.3860S ribosomal protein L26 OS=Caenorhabditis elegan... [more]
RL26B_YEAST1.295e-2857.0060S ribosomal protein L26-B OS=Saccharomyces cerev... [more]
RL26A_YEAST1.295e-2857.0060S ribosomal protein L26-A OS=Saccharomyces cerev... [more]
RL24_PYRHO4.175e-1948.5750S ribosomal protein L24P OS=Pyrococcus horikoshi... [more]
RL24_PYRFU5.453e-1950.0050S ribosomal protein L24P OS=Pyrococcus furiosus ... [more]
RL24_PYRKO4.616e-1847.8750S ribosomal protein L24P OS=Pyrococcus kodakarae... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_A04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935672 ID=CK935672; Name=CK935672; organism=Citrus sinensis; type=EST; length=742bp
GGGGAGCCTCTCCCAGTTCTTCCTCTAGCTGCCGCTGTTGTAAAACCCTA
GGCCCAGTCCTCCACATCCACCATGAAGTACAACCCCAGGGTGTCATCCT
CTCGCCGTAAGAACCGGAAGGCGCACTTCACCGCCCCTTCCAGCGTGCGC
CGCATCTTGATGAGCGCGCCGCTGTCCACAGACCTCCGTCAGAAGTACAA
CGTAAGGTCGATGCCTGTGCGCAAGGACGACGAGGTTCAGGTTGTGCGTG
GGACCTACAAGGGGCGCGAGGGCAAGGTCGTTCAAGTGTATCGCCGGAAG
TGGGTCATTCACATCGAGCGCATCACTCGCGAGAAGGTTAATGGATCCAC
TGTGAATGTGGGAATCAACTCATCAAAGGTCGTGATCACCAAGCTCCGTC
TGGACAAGGACAGGAAGTCTTTGCTCGATCGCAAGGCCAAGGGACGTGCC
GCCGCCGACAAGGAGAAGGGTACCAAGTTCACCCCAGAGGATATTATGCA
GAGCGTTGACTAATTTTGATAAGAGGTTGTTTTTAAAGTTTTTGTTTAAT
CATAGAATTTATGGATTTAGGATGTTTTGTTTTGGCAATGTCACTAAGAT
ATTTCTATTGTTATTGTGTTATGTCATGAGGATCCGATTATGGGCTTATG
TTGGAGATTTAAGATACTTCTTTGGATTTTCTCCTCGTCGTTTCAATTTT
AATTCTATATTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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