CK935672
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_PYRAB (50S ribosomal protein L24P OS=Pyrococcus abyssi GN=rpl24p PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.754e-17 Identity = 44/98 (44.90%), Postives = 68/98 (69.39%), Query Frame = 1 Query: 94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387 S RK RK + AP +R+ +M+APLS +LR+KY +R++PVR D+V+++RG +KG EGKVV+V +++ I++E T K NG+ V I+ S V+I Sbjct: 5 SKQPRKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHEGKVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMI 102
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_KORCO (50S ribosomal protein L24P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl24p PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.754e-17 Identity = 45/94 (47.87%), Postives = 65/94 (69.15%), Query Frame = 1 Query: 109 KNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390 K RK + AP R +MSAPLS +L+ KY + S+P+RK D V+V+RG Y+G EG+V+ V R+++ I ++ I R K +G+ V V I+ SKVVIT Sbjct: 10 KQRKYLYNAPIHHRGKIMSAPLSEELKSKYGINSIPIRKGDRVKVMRGDYRGTEGEVISVDRKRYRIAVKGIVRRKADGTEVPVPIHPSKVVIT 103
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_METKA (50S ribosomal protein L24P OS=Methanopyrus kandleri GN=rpl24p PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.103e-17 Identity = 47/98 (47.96%), Postives = 66/98 (67.35%), Query Frame = 1 Query: 94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387 SS RK RKA F AP R+ LMSA L +LR+K+N RS+PVR+ D V+++RG +KG EG+VV+V ++ I++E T E+ NG V I+ S V+I Sbjct: 6 SSQPRKQRKAFFNAPLHKRQKLMSATLHPELRKKFNRRSLPVRRGDMVRIMRGDFKGHEGEVVEVDLKRLRIYVEGATIERANGEKVYYPIHPSNVMI 103
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_AERPE (50S ribosomal protein L24P OS=Aeropyrum pernix GN=rpl24p PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.103e-17 Identity = 48/98 (48.98%), Postives = 68/98 (69.39%), Query Frame = 1 Query: 94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387 S RK R+A + AP R+ L+SA LS +LR+KY VRS+PVRK D+V+V+RG +KG EGKVV+V R+ I+I+ +T K +G+ V I+ S V+I Sbjct: 7 SRQPRKQRRALYRAPLHARQKLVSATLSPELREKYGVRSLPVRKGDKVRVMRGDFKGHEGKVVKVDLRRLRIYIDGVTVTKADGTPVFRPIHPSNVMI 104
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_STAMF (50S ribosomal protein L24P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl24p PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.939e-16 Identity = 44/98 (44.90%), Postives = 66/98 (67.35%), Query Frame = 1 Query: 94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387 SS K RKA F P +R L +APLS +LR+KY V+ +PVRK D V+++RG +KG EGKVV++ R+ +++E + R+K + + V I+ SKV+I Sbjct: 6 SSKPSKQRKALFNMPLHLRHKLFNAPLSKELREKYGVKKLPVRKGDVVRIMRGDWKGHEGKVVRIDLRRVRLYVEGVQRKKADQTPVYYPIHPSKVMI 103
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_HYPBU (50S ribosomal protein L24P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl24p PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.642e-15 Identity = 45/98 (45.92%), Postives = 62/98 (63.27%), Query Frame = 1 Query: 94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387 SS RK R+A F AP R+ LM+APLS +LR++Y +RS+PVR DEV ++RG +KG GKVV+V R+ I +E +T G I+ S V+I Sbjct: 6 SSQPRKQRRALFNAPLHKRQKLMAAPLSPELRKQYGIRSLPVRVGDEVVIMRGDFKGHRGKVVRVDLRRMRIFVEGVTITNARGEPRYYPIHPSNVMI 103
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_METTH (50S ribosomal protein L24P OS=Methanobacterium thermoautotrophicum GN=rpl24p PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.144e-15 Identity = 41/99 (41.41%), Postives = 68/99 (68.69%), Query Frame = 1 Query: 91 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387 +S RK RK + AP RR +MSA LS +LR++Y RS+P+RK D+V+++RG ++G EGKV +V +++ +++E T +KV+G+TV ++ S + I Sbjct: 1 MSKQPRKQRKYIYEAPLHARRKMMSANLSRELREEYGRRSLPLRKGDKVEILRGDFRGHEGKVEKVDLKRYRVYVEGATIQKVDGTTVYFPLHPSNLRI 99
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_SULAC (50S ribosomal protein L24P OS=Sulfolobus acidocaldarius GN=rpl24p PE=3 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 3.657e-15 Identity = 40/100 (40.00%), Postives = 69/100 (69.00%), Query Frame = 1 Query: 91 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390 +SS K RK + P+ +R L++A LS DL ++Y ++ + +RK D V+++RG+ G EGKVV+V R++ + IE +T++K +G+ V V +++SKV+IT Sbjct: 2 ISSKPSKQRKLVYNLPNHLRYKLLTARLSEDLEKQYGIKRISIRKGDSVKLMRGSQVGYEGKVVEVDRKRGRVAIEGLTKKKADGTPVYVWVHASKVIIT 101
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_SULSO (50S ribosomal protein L24P OS=Sulfolobus solfataricus GN=rpl24p PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.096e-14 Identity = 44/100 (44.00%), Postives = 65/100 (65.00%), Query Frame = 1 Query: 91 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390 VS K RK +T P R+ L+ A +S D+ +Y ++ + VRK D V+V+RG G+EGKVV+V + + IE ITR+KV+G+ V V I++SKV+IT Sbjct: 2 VSLKPSKQRKLLYTLPLHQRKKLLVAKVSDDIASQYGIKRIRVRKGDTVRVMRGGNSGKEGKVVEVNTKTGRLAIEGITRKKVDGTPVYVWIHASKVMIT 101
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_METS3 (50S ribosomal protein L24P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl24p PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.096e-14 Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = 1 Query: 91 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387 +S RK RKA + AP+ R MSA LS DLR RS+P+RK D+VQV+RG +KG EG V+ V + I IE +T K +G+ V + ++ S V+I Sbjct: 1 MSKQPRKQRKALYNAPAHARGKHMSATLSKDLRADIGKRSLPIRKGDKVQVLRGDFKGHEGAVLGVDYGSYKITIEEVTLSKPDGTAVFLPVDPSNVMI 99 The following BLAST results are available for this feature:
BLAST of CK935672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 56
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Sequences
The
following sequences are available for this feature:
EST sequence >CK935672 ID=CK935672; Name=CK935672; organism=Citrus sinensis; type=EST; length=742bpback to top |