CK935672

Overview
NameCK935672
Unique NameCK935672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3221 contig Csv1_Contig3221:33..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_PYRAB (50S ribosomal protein L24P OS=Pyrococcus abyssi GN=rpl24p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.754e-17
Identity = 44/98 (44.90%), Postives = 68/98 (69.39%), Query Frame = 1
Query:   94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387
            S   RK RK  + AP  +R+ +M+APLS +LR+KY +R++PVR  D+V+++RG +KG EGKVV+V  +++ I++E  T  K NG+ V   I+ S V+I
Sbjct:    5 SKQPRKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHEGKVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMI 102          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_KORCO (50S ribosomal protein L24P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.754e-17
Identity = 45/94 (47.87%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  109 KNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390
            K RK  + AP   R  +MSAPLS +L+ KY + S+P+RK D V+V+RG Y+G EG+V+ V R+++ I ++ I R K +G+ V V I+ SKVVIT
Sbjct:   10 KQRKYLYNAPIHHRGKIMSAPLSEELKSKYGINSIPIRKGDRVKVMRGDYRGTEGEVISVDRKRYRIAVKGIVRRKADGTEVPVPIHPSKVVIT 103          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_METKA (50S ribosomal protein L24P OS=Methanopyrus kandleri GN=rpl24p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.103e-17
Identity = 47/98 (47.96%), Postives = 66/98 (67.35%), Query Frame = 1
Query:   94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387
            SS  RK RKA F AP   R+ LMSA L  +LR+K+N RS+PVR+ D V+++RG +KG EG+VV+V  ++  I++E  T E+ NG  V   I+ S V+I
Sbjct:    6 SSQPRKQRKAFFNAPLHKRQKLMSATLHPELRKKFNRRSLPVRRGDMVRIMRGDFKGHEGEVVEVDLKRLRIYVEGATIERANGEKVYYPIHPSNVMI 103          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_AERPE (50S ribosomal protein L24P OS=Aeropyrum pernix GN=rpl24p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.103e-17
Identity = 48/98 (48.98%), Postives = 68/98 (69.39%), Query Frame = 1
Query:   94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387
            S   RK R+A + AP   R+ L+SA LS +LR+KY VRS+PVRK D+V+V+RG +KG EGKVV+V  R+  I+I+ +T  K +G+ V   I+ S V+I
Sbjct:    7 SRQPRKQRRALYRAPLHARQKLVSATLSPELREKYGVRSLPVRKGDKVRVMRGDFKGHEGKVVKVDLRRLRIYIDGVTVTKADGTPVFRPIHPSNVMI 104          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_STAMF (50S ribosomal protein L24P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.939e-16
Identity = 44/98 (44.90%), Postives = 66/98 (67.35%), Query Frame = 1
Query:   94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387
            SS   K RKA F  P  +R  L +APLS +LR+KY V+ +PVRK D V+++RG +KG EGKVV++  R+  +++E + R+K + + V   I+ SKV+I
Sbjct:    6 SSKPSKQRKALFNMPLHLRHKLFNAPLSKELREKYGVKKLPVRKGDVVRIMRGDWKGHEGKVVRIDLRRVRLYVEGVQRKKADQTPVYYPIHPSKVMI 103          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_HYPBU (50S ribosomal protein L24P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.642e-15
Identity = 45/98 (45.92%), Postives = 62/98 (63.27%), Query Frame = 1
Query:   94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387
            SS  RK R+A F AP   R+ LM+APLS +LR++Y +RS+PVR  DEV ++RG +KG  GKVV+V  R+  I +E +T     G      I+ S V+I
Sbjct:    6 SSQPRKQRRALFNAPLHKRQKLMAAPLSPELRKQYGIRSLPVRVGDEVVIMRGDFKGHRGKVVRVDLRRMRIFVEGVTITNARGEPRYYPIHPSNVMI 103          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_METTH (50S ribosomal protein L24P OS=Methanobacterium thermoautotrophicum GN=rpl24p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.144e-15
Identity = 41/99 (41.41%), Postives = 68/99 (68.69%), Query Frame = 1
Query:   91 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387
            +S   RK RK  + AP   RR +MSA LS +LR++Y  RS+P+RK D+V+++RG ++G EGKV +V  +++ +++E  T +KV+G+TV   ++ S + I
Sbjct:    1 MSKQPRKQRKYIYEAPLHARRKMMSANLSRELREEYGRRSLPLRKGDKVEILRGDFRGHEGKVEKVDLKRYRVYVEGATIQKVDGTTVYFPLHPSNLRI 99          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_SULAC (50S ribosomal protein L24P OS=Sulfolobus acidocaldarius GN=rpl24p PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.657e-15
Identity = 40/100 (40.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:   91 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390
            +SS   K RK  +  P+ +R  L++A LS DL ++Y ++ + +RK D V+++RG+  G EGKVV+V R++  + IE +T++K +G+ V V +++SKV+IT
Sbjct:    2 ISSKPSKQRKLVYNLPNHLRYKLLTARLSEDLEKQYGIKRISIRKGDSVKLMRGSQVGYEGKVVEVDRKRGRVAIEGLTKKKADGTPVYVWVHASKVIIT 101          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_SULSO (50S ribosomal protein L24P OS=Sulfolobus solfataricus GN=rpl24p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.096e-14
Identity = 44/100 (44.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:   91 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390
            VS    K RK  +T P   R+ L+ A +S D+  +Y ++ + VRK D V+V+RG   G+EGKVV+V  +   + IE ITR+KV+G+ V V I++SKV+IT
Sbjct:    2 VSLKPSKQRKLLYTLPLHQRKKLLVAKVSDDIASQYGIKRIRVRKGDTVRVMRGGNSGKEGKVVEVNTKTGRLAIEGITRKKVDGTPVYVWIHASKVMIT 101          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_METS3 (50S ribosomal protein L24P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.096e-14
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = 1
Query:   91 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387
            +S   RK RKA + AP+  R   MSA LS DLR     RS+P+RK D+VQV+RG +KG EG V+ V    + I IE +T  K +G+ V + ++ S V+I
Sbjct:    1 MSKQPRKQRKALYNAPAHARGKHMSATLSKDLRADIGKRSLPIRKGDKVQVLRGDFKGHEGAVLGVDYGSYKITIEEVTLSKPDGTAVFLPVDPSNVMI 99          
The following BLAST results are available for this feature:
BLAST of CK935672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RL24_PYRAB1.754e-1744.9050S ribosomal protein L24P OS=Pyrococcus abyssi GN... [more]
RL24_KORCO1.754e-1747.8750S ribosomal protein L24P OS=Korarchaeum cryptofi... [more]
RL24_METKA5.103e-1747.9650S ribosomal protein L24P OS=Methanopyrus kandler... [more]
RL24_AERPE5.103e-1748.9850S ribosomal protein L24P OS=Aeropyrum pernix GN=... [more]
RL24_STAMF1.939e-1644.9050S ribosomal protein L24P OS=Staphylothermus mari... [more]
RL24_HYPBU1.642e-1545.9250S ribosomal protein L24P OS=Hyperthermus butylic... [more]
RL24_METTH2.144e-1541.4150S ribosomal protein L24P OS=Methanobacterium the... [more]
RL24_SULAC3.657e-1540.0050S ribosomal protein L24P OS=Sulfolobus acidocald... [more]
RL24_SULSO3.096e-1444.0050S ribosomal protein L24P OS=Sulfolobus solfatari... [more]
RL24_METS33.096e-1444.4450S ribosomal protein L24P OS=Methanobrevibacter s... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_A04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935672 ID=CK935672; Name=CK935672; organism=Citrus sinensis; type=EST; length=742bp
GGGGAGCCTCTCCCAGTTCTTCCTCTAGCTGCCGCTGTTGTAAAACCCTA
GGCCCAGTCCTCCACATCCACCATGAAGTACAACCCCAGGGTGTCATCCT
CTCGCCGTAAGAACCGGAAGGCGCACTTCACCGCCCCTTCCAGCGTGCGC
CGCATCTTGATGAGCGCGCCGCTGTCCACAGACCTCCGTCAGAAGTACAA
CGTAAGGTCGATGCCTGTGCGCAAGGACGACGAGGTTCAGGTTGTGCGTG
GGACCTACAAGGGGCGCGAGGGCAAGGTCGTTCAAGTGTATCGCCGGAAG
TGGGTCATTCACATCGAGCGCATCACTCGCGAGAAGGTTAATGGATCCAC
TGTGAATGTGGGAATCAACTCATCAAAGGTCGTGATCACCAAGCTCCGTC
TGGACAAGGACAGGAAGTCTTTGCTCGATCGCAAGGCCAAGGGACGTGCC
GCCGCCGACAAGGAGAAGGGTACCAAGTTCACCCCAGAGGATATTATGCA
GAGCGTTGACTAATTTTGATAAGAGGTTGTTTTTAAAGTTTTTGTTTAAT
CATAGAATTTATGGATTTAGGATGTTTTGTTTTGGCAATGTCACTAAGAT
ATTTCTATTGTTATTGTGTTATGTCATGAGGATCCGATTATGGGCTTATG
TTGGAGATTTAAGATACTTCTTTGGATTTTCTCCTCGTCGTTTCAATTTT
AATTCTATATTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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