CK935672

Overview
NameCK935672
Unique NameCK935672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3221 contig Csv1_Contig3221:33..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_IGNH4 (50S ribosomal protein L24P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 42/99 (42.42%), Postives = 60/99 (60.61%), Query Frame = 1
Query:   94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390
            S    K RK  + AP  +R   M+APLS +LR+KY V+ +PVRK D V++VRG ++G EG V +V  +K  I+++  T E   G      I+ SKV+IT
Sbjct:    6 SKKPSKQRKFLYNAPLHLRHKFMNAPLSKELREKYGVKRLPVRKGDTVKIVRGKFRGHEGTVAKVDLKKARIYVDGATIENSRGEQRFYPIHPSKVIIT 104          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_METST (50S ribosomal protein L24P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.008e-14
Identity = 41/100 (41.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:   91 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390
            +S   RK RKA +TAP   R   MS  LS DL++++N RS PVRK D V++VRG ++G EGKV  V  + + + ++  + +K +GS +   I+ S +V+T
Sbjct:    1 MSKQPRKQRKALYTAPLHKRHNSMSVHLSDDLKEEFNRRSFPVRKGDSVEIVRGDFRGTEGKVEGVDLKNYRVLVDGASSQKQDGSKLYQPIHPSNLVLT 100          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_META3 (50S ribosomal protein L24P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.008e-14
Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = 1
Query:   94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387
            S   RK RKA + AP   R  LMSA LS DL++KYN  ++PV+  D V+++RGT+KG EG+V +V  + + I++E     K +G+     I+ S V+I
Sbjct:    6 SKQPRKQRKALYNAPLHARNKLMSAMLSKDLKEKYNKNALPVKTGDTVKILRGTFKGIEGEVSKVDYKSYKIYVEGAVNRKQDGNESLYPIHPSNVMI 103          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_METJA (50S ribosomal protein L24P OS=Methanocaldococcus jannaschii GN=rpl24p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 40/98 (40.82%), Postives = 64/98 (65.31%), Query Frame = 1
Query:   94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387
            S   RK RKA F AP  +RR +MSA LS +L++K    ++PVRK D V+++RG +KG EG+V++V  +++ I++E    ++ +G  V   I+ S V+I
Sbjct:    6 SKQPRKQRKALFNAPLHLRRKVMSAMLSKELKEKLGKNAIPVRKGDVVRIMRGDFKGLEGEVIKVDLKRYRIYVEGANNKRQDGREVPYPIHPSNVMI 103          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_PYRAR (50S ribosomal protein L24P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13
Identity = 43/98 (43.88%), Postives = 60/98 (61.22%), Query Frame = 1
Query:   94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387
            S+  RK R A F AP  +R  L +A LS +L +K  V+ +PVR+ D V ++RG +KG  GKVV+V  +K  I++E  TR    G TV   I+ SKV+I
Sbjct:    6 SAQPRKQRLALFNAPLHLRHKLFNAKLSPELEKKLGVKRLPVRRGDTVMILRGDFKGVTGKVVRVDLKKVRIYVEGATRTNSRGQTVYYPIHPSKVMI 103          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_THEPD (50S ribosomal protein L24P OS=Thermofilum pendens (strain Hrk 5) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 44/100 (44.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:   94 SSSRRKNRKAH-FTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390
            SS   K RK   + AP  +R   + APLS +L+QK  ++ + VRK D V +VRG++KG EGKV  V  +K  IH+E  T  K +G+ V   I+ SKVV+T
Sbjct:    6 SSKPGKVRKREVYDAPLHIRSKKIVAPLSAELQQKLGIKRIRVRKGDRVLIVRGSFKGHEGKVTSVDVKKGRIHVEGATLRKADGTEVPFPIHPSKVVVT 105          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_PYRIL (50S ribosomal protein L24P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 1
Query:  106 RKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387
            R+ R + +TAP  +R  L +A LS DL++K  V+ +PVR+ D V ++RG +KG  GKVV+V  +K  I++E  TR    G TV   I+ SKV+I
Sbjct:   10 RRQRLSLYTAPLHLRHKLFNAKLSPDLQKKLGVKRLPVRRGDTVMIMRGDFKGVTGKVVKVDLKKVRIYVEGATRTNSKGQTVYYPIHPSKVMI 103          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_METM7 (50S ribosomal protein L24P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 40/99 (40.40%), Postives = 63/99 (63.64%), Query Frame = 1
Query:   94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390
            S   RK RKA + AP  +R  +M+A LS +L++K+N  S+PV+K D V+V+RG +KG EG+V +V    + I +E +  +K +G+     I+ S V+IT
Sbjct:    6 SKQPRKQRKALYNAPLHLRNSVMAAMLSKELKEKFNKNSLPVKKGDTVKVLRGNFKGIEGEVSKVDYAGYKIIVEGVVNKKQDGTETAYPIHPSNVMIT 104          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_METM5 (50S ribosomal protein L24P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 40/99 (40.40%), Postives = 63/99 (63.64%), Query Frame = 1
Query:   94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390
            S   RK RKA + AP  +R  +M+A LS +L++K+N  S+PV+K D V+V+RG +KG EG+V +V    + I +E +  +K +G+     I+ S V+IT
Sbjct:    6 SKQPRKQRKALYNAPLHLRNSVMAAMLSKELKEKFNKNSLPVKKGDTVKVLRGNFKGIEGEVSKVDYAGYKIIVEGVVNKKQDGTETAYPIHPSNVMIT 104          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_PYRAE (50S ribosomal protein L24P OS=Pyrobaculum aerophilum GN=rpl24p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.471e-13
Identity = 41/98 (41.84%), Postives = 62/98 (63.27%), Query Frame = 1
Query:   94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387
            S+  RK R++ + AP  +RR L +A LS +L +K  V+ +PVR+ D V ++RG +KG  GKVV+V  ++  I++E  TR    G TV   I+ SKV+I
Sbjct:    6 SAQPRKQRRSLYKAPLHLRRKLFNAKLSPELAKKLGVKRLPVRRGDTVLILRGDFKGVTGKVVKVDLKRVRIYVEGATRTNSRGQTVYYPIHPSKVMI 103          
The following BLAST results are available for this feature:
BLAST of CK935672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RL24_IGNH44.044e-1442.4250S ribosomal protein L24P OS=Ignicoccus hospitali... [more]
RL24_METST9.008e-1441.0050S ribosomal protein L24P OS=Methanosphaera stadt... [more]
RL24_META39.008e-1441.8450S ribosomal protein L24P OS=Methanococcus aeolic... [more]
RL24_METJA1.177e-1340.8250S ribosomal protein L24P OS=Methanocaldococcus j... [more]
RL24_PYRAR1.537e-1343.8850S ribosomal protein L24P OS=Pyrobaculum arsenati... [more]
RL24_THEPD2.007e-1344.0050S ribosomal protein L24P OS=Thermofilum pendens ... [more]
RL24_PYRIL2.621e-1343.6250S ribosomal protein L24P OS=Pyrobaculum islandic... [more]
RL24_METM72.621e-1340.4050S ribosomal protein L24P OS=Methanococcus maripa... [more]
RL24_METM52.621e-1340.4050S ribosomal protein L24P OS=Methanococcus maripa... [more]
RL24_PYRAE4.471e-1341.8450S ribosomal protein L24P OS=Pyrobaculum aerophil... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_A04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935672 ID=CK935672; Name=CK935672; organism=Citrus sinensis; type=EST; length=742bp
GGGGAGCCTCTCCCAGTTCTTCCTCTAGCTGCCGCTGTTGTAAAACCCTA
GGCCCAGTCCTCCACATCCACCATGAAGTACAACCCCAGGGTGTCATCCT
CTCGCCGTAAGAACCGGAAGGCGCACTTCACCGCCCCTTCCAGCGTGCGC
CGCATCTTGATGAGCGCGCCGCTGTCCACAGACCTCCGTCAGAAGTACAA
CGTAAGGTCGATGCCTGTGCGCAAGGACGACGAGGTTCAGGTTGTGCGTG
GGACCTACAAGGGGCGCGAGGGCAAGGTCGTTCAAGTGTATCGCCGGAAG
TGGGTCATTCACATCGAGCGCATCACTCGCGAGAAGGTTAATGGATCCAC
TGTGAATGTGGGAATCAACTCATCAAAGGTCGTGATCACCAAGCTCCGTC
TGGACAAGGACAGGAAGTCTTTGCTCGATCGCAAGGCCAAGGGACGTGCC
GCCGCCGACAAGGAGAAGGGTACCAAGTTCACCCCAGAGGATATTATGCA
GAGCGTTGACTAATTTTGATAAGAGGTTGTTTTTAAAGTTTTTGTTTAAT
CATAGAATTTATGGATTTAGGATGTTTTGTTTTGGCAATGTCACTAAGAT
ATTTCTATTGTTATTGTGTTATGTCATGAGGATCCGATTATGGGCTTATG
TTGGAGATTTAAGATACTTCTTTGGATTTTCTCCTCGTCGTTTCAATTTT
AATTCTATATTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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