CK935672
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_IGNH4 (50S ribosomal protein L24P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl24p PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14 Identity = 42/99 (42.42%), Postives = 60/99 (60.61%), Query Frame = 1 Query: 94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390 S K RK + AP +R M+APLS +LR+KY V+ +PVRK D V++VRG ++G EG V +V +K I+++ T E G I+ SKV+IT Sbjct: 6 SKKPSKQRKFLYNAPLHLRHKFMNAPLSKELREKYGVKRLPVRKGDTVKIVRGKFRGHEGTVAKVDLKKARIYVDGATIENSRGEQRFYPIHPSKVIIT 104
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_METST (50S ribosomal protein L24P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl24p PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 9.008e-14 Identity = 41/100 (41.00%), Postives = 63/100 (63.00%), Query Frame = 1 Query: 91 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390 +S RK RKA +TAP R MS LS DL++++N RS PVRK D V++VRG ++G EGKV V + + + ++ + +K +GS + I+ S +V+T Sbjct: 1 MSKQPRKQRKALYTAPLHKRHNSMSVHLSDDLKEEFNRRSFPVRKGDSVEIVRGDFRGTEGKVEGVDLKNYRVLVDGASSQKQDGSKLYQPIHPSNLVLT 100
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_META3 (50S ribosomal protein L24P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl24p PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 9.008e-14 Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = 1 Query: 94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387 S RK RKA + AP R LMSA LS DL++KYN ++PV+ D V+++RGT+KG EG+V +V + + I++E K +G+ I+ S V+I Sbjct: 6 SKQPRKQRKALYNAPLHARNKLMSAMLSKDLKEKYNKNALPVKTGDTVKILRGTFKGIEGEVSKVDYKSYKIYVEGAVNRKQDGNESLYPIHPSNVMI 103
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_METJA (50S ribosomal protein L24P OS=Methanocaldococcus jannaschii GN=rpl24p PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13 Identity = 40/98 (40.82%), Postives = 64/98 (65.31%), Query Frame = 1 Query: 94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387 S RK RKA F AP +RR +MSA LS +L++K ++PVRK D V+++RG +KG EG+V++V +++ I++E ++ +G V I+ S V+I Sbjct: 6 SKQPRKQRKALFNAPLHLRRKVMSAMLSKELKEKLGKNAIPVRKGDVVRIMRGDFKGLEGEVIKVDLKRYRIYVEGANNKRQDGREVPYPIHPSNVMI 103
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_PYRAR (50S ribosomal protein L24P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl24p PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13 Identity = 43/98 (43.88%), Postives = 60/98 (61.22%), Query Frame = 1 Query: 94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387 S+ RK R A F AP +R L +A LS +L +K V+ +PVR+ D V ++RG +KG GKVV+V +K I++E TR G TV I+ SKV+I Sbjct: 6 SAQPRKQRLALFNAPLHLRHKLFNAKLSPELEKKLGVKRLPVRRGDTVMILRGDFKGVTGKVVRVDLKKVRIYVEGATRTNSRGQTVYYPIHPSKVMI 103
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_THEPD (50S ribosomal protein L24P OS=Thermofilum pendens (strain Hrk 5) GN=rpl24p PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13 Identity = 44/100 (44.00%), Postives = 61/100 (61.00%), Query Frame = 1 Query: 94 SSSRRKNRKAH-FTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390 SS K RK + AP +R + APLS +L+QK ++ + VRK D V +VRG++KG EGKV V +K IH+E T K +G+ V I+ SKVV+T Sbjct: 6 SSKPGKVRKREVYDAPLHIRSKKIVAPLSAELQQKLGIKRIRVRKGDRVLIVRGSFKGHEGKVTSVDVKKGRIHVEGATLRKADGTEVPFPIHPSKVVVT 105
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_PYRIL (50S ribosomal protein L24P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl24p PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13 Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 1 Query: 106 RKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387 R+ R + +TAP +R L +A LS DL++K V+ +PVR+ D V ++RG +KG GKVV+V +K I++E TR G TV I+ SKV+I Sbjct: 10 RRQRLSLYTAPLHLRHKLFNAKLSPDLQKKLGVKRLPVRRGDTVMIMRGDFKGVTGKVVKVDLKKVRIYVEGATRTNSKGQTVYYPIHPSKVMI 103
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_METM7 (50S ribosomal protein L24P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl24p PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13 Identity = 40/99 (40.40%), Postives = 63/99 (63.64%), Query Frame = 1 Query: 94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390 S RK RKA + AP +R +M+A LS +L++K+N S+PV+K D V+V+RG +KG EG+V +V + I +E + +K +G+ I+ S V+IT Sbjct: 6 SKQPRKQRKALYNAPLHLRNSVMAAMLSKELKEKFNKNSLPVKKGDTVKVLRGNFKGIEGEVSKVDYAGYKIIVEGVVNKKQDGTETAYPIHPSNVMIT 104
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_METM5 (50S ribosomal protein L24P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl24p PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13 Identity = 40/99 (40.40%), Postives = 63/99 (63.64%), Query Frame = 1 Query: 94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390 S RK RKA + AP +R +M+A LS +L++K+N S+PV+K D V+V+RG +KG EG+V +V + I +E + +K +G+ I+ S V+IT Sbjct: 6 SKQPRKQRKALYNAPLHLRNSVMAAMLSKELKEKFNKNSLPVKKGDTVKVLRGNFKGIEGEVSKVDYAGYKIIVEGVVNKKQDGTETAYPIHPSNVMIT 104
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_PYRAE (50S ribosomal protein L24P OS=Pyrobaculum aerophilum GN=rpl24p PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.471e-13 Identity = 41/98 (41.84%), Postives = 62/98 (63.27%), Query Frame = 1 Query: 94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387 S+ RK R++ + AP +RR L +A LS +L +K V+ +PVR+ D V ++RG +KG GKVV+V ++ I++E TR G TV I+ SKV+I Sbjct: 6 SAQPRKQRRSLYKAPLHLRRKLFNAKLSPELAKKLGVKRLPVRRGDTVLILRGDFKGVTGKVVKVDLKRVRIYVEGATRTNSRGQTVYYPIHPSKVMI 103 The following BLAST results are available for this feature:
BLAST of CK935672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 56
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Sequences
The
following sequences are available for this feature:
EST sequence >CK935672 ID=CK935672; Name=CK935672; organism=Citrus sinensis; type=EST; length=742bpback to top |