CK935672
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_PYRCJ (50S ribosomal protein L24P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl24p PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.626e-13 Identity = 41/98 (41.84%), Postives = 62/98 (63.27%), Query Frame = 1 Query: 94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387 S+ RK R + + AP +RR L++A LS +L++K V+ +PVR+ D V ++RG +KG GKVV+V ++ I +E TR G TV I+ SKV+I Sbjct: 6 SAQPRKQRLSLYAAPLHLRRKLLNAKLSPELQKKLGVKRLPVRRGDTVLIMRGDFKGVTGKVVKVDLKRVRIFVEGATRTNSRGQTVYYPIHPSKVMI 103
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_METMP (50S ribosomal protein L24P OS=Methanococcus maripaludis GN=rpl24p PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.626e-13 Identity = 40/99 (40.40%), Postives = 62/99 (62.63%), Query Frame = 1 Query: 94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390 S RK RKA + AP +R +MSA L+ +L++KY S+PV+K D V+V+RG +KG EG+V +V + I +E + +K +G+ I+ S V+IT Sbjct: 6 SKQPRKQRKALYNAPLHLRNSVMSAMLAKELKEKYAKNSLPVKKGDTVKVLRGNFKGIEGEVSKVDYAGYKIIVEGVVNKKQDGNETAYPIHPSNVMIT 104
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL26_BRUPA (60S ribosomal protein L26 (Fragment) OS=Brugia pahangi PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.960e-13 Identity = 38/60 (63.33%), Postives = 44/60 (73.33%), Query Frame = 1 Query: 73 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRG 252 MK N VSSS RK RKA F APS +RR LMSAP + DLR K+ +RS+P+R DDEV V RG Sbjct: 1 MKQNQFVSSSARKARKAPFNAPSHIRRKLMSAPSTKDLRNKHGIRSIPIRIDDEVTVTRG 60
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_METVS (50S ribosomal protein L24P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl24p PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.960e-13 Identity = 40/99 (40.40%), Postives = 61/99 (61.62%), Query Frame = 1 Query: 94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390 S RK RKA + AP +R +MSA LS L++KY ++PV+K D V+V+RG++KG EG+V +V + I +E + +K +G I+ S V+IT Sbjct: 6 SKQPRKQRKALYNAPLHLRNSVMSAMLSKALKEKYGKNALPVKKGDTVKVLRGSFKGIEGEVSKVNYSGYKIIVEGVVNKKQDGKETPYPIHPSNVMIT 104
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_METVA (50S ribosomal protein L24P OS=Methanococcus vannielii GN=rpl24p PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.960e-13 Identity = 40/99 (40.40%), Postives = 61/99 (61.62%), Query Frame = 1 Query: 94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390 S RK RKA + AP +R +MSA LS L++KY ++PV+K D V+V+RG++KG EG+V +V + I +E + +K +G I+ S V+IT Sbjct: 6 SKQPRKQRKALYNAPLHLRNSVMSAMLSKALKEKYGKNALPVKKGDTVKVLRGSFKGIEGEVSKVNYSGYKIIVEGVVNKKQDGKETPYPIHPSNVMIT 104
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_CALMQ (50S ribosomal protein L24P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl24p PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.960e-13 Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = 1 Query: 94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387 SS RK KA AP RR L++APLS DL+++ +R +PVR D V ++RG +KG GKV +V ++ I+++ + +K +G V I+ SKVVI Sbjct: 7 SSQPRKQHKALTKAPWHARRRLLTAPLSKDLQRQLGIRRIPVRVGDTVLILRGDFKGTRGKVTRVDYKRVRIYVDSASFKKPSGEAVYYPIHPSKVVI 104
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_METMA (50S ribosomal protein L24P OS=Methanosarcina mazei GN=rpl24p PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.699e-12 Identity = 42/100 (42.00%), Postives = 57/100 (57.00%), Query Frame = 1 Query: 91 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390 VS RK RKA +TAP +R+ M A LS L ++Y RS V D V+++RG +KG EGKV V I ++ + KV+G+ V IN S V+IT Sbjct: 8 VSKQPRKQRKARYTAPLHIRQKFMGARLSEALAKQYGTRSAAVITGDTVKIMRGDFKGTEGKVQSVSLMDGTIAVDGVISTKVDGTEVPRPINPSNVMIT 107
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_ARCFU (50S ribosomal protein L24P OS=Archaeoglobus fulgidus GN=rpl24p PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.699e-12 Identity = 39/102 (38.24%), Postives = 64/102 (62.75%), Query Frame = 1 Query: 85 PRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390 P+ R++ R + TA R L+ A LS DLR+KY R++ VRK D+V+++RG + G EG+V++V ++ I ++ +T K +G+ V V I+ S V+IT Sbjct: 4 PKSKQPRKQRRWLYKTAKLHERHKLLHATLSKDLRKKYGKRAIRVRKGDKVRIMRGQFAGHEGRVLEVDMKRCRITVDGVTVTKADGTEVAVPIHPSNVMIT 105
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_METTP (50S ribosomal protein L24P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl24p PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12 Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 1 Query: 91 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390 VS RK RKA F AP +R+ M A LS +LR++Y RS V+K D V+V+RG G EG+V+ V ++ VI + ++ + +G+ V I+ S V+IT Sbjct: 2 VSKQPRKQRKARFNAPLHMRQRFMHAMLSPELRKEYKKRSAQVKKGDTVKVMRGDNAGVEGEVLSVDLKRCVITVAGVSNFRADGTEVPRPIHPSNVMIT 101
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_METBF (50S ribosomal protein L24P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl24p PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.456e-12 Identity = 43/100 (43.00%), Postives = 56/100 (56.00%), Query Frame = 1 Query: 91 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390 VS RK RKA + AP VR+ M A LS L ++Y RS V D V+V+RG YKG EGKV V + I ++ + KV+G+ V I S V+IT Sbjct: 2 VSKQPRKQRKARYNAPLHVRQKFMGARLSEALSKEYGTRSAAVIAGDTVKVMRGDYKGTEGKVQAVSLQDGTISVDGVISTKVDGTEVPRPIYPSNVMIT 101 The following BLAST results are available for this feature:
BLAST of CK935672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 56
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK935672 ID=CK935672; Name=CK935672; organism=Citrus sinensis; type=EST; length=742bpback to top |