CK935672

Overview
NameCK935672
Unique NameCK935672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3221 contig Csv1_Contig3221:33..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_PYRCJ (50S ribosomal protein L24P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.626e-13
Identity = 41/98 (41.84%), Postives = 62/98 (63.27%), Query Frame = 1
Query:   94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387
            S+  RK R + + AP  +RR L++A LS +L++K  V+ +PVR+ D V ++RG +KG  GKVV+V  ++  I +E  TR    G TV   I+ SKV+I
Sbjct:    6 SAQPRKQRLSLYAAPLHLRRKLLNAKLSPELQKKLGVKRLPVRRGDTVLIMRGDFKGVTGKVVKVDLKRVRIFVEGATRTNSRGQTVYYPIHPSKVMI 103          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_METMP (50S ribosomal protein L24P OS=Methanococcus maripaludis GN=rpl24p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.626e-13
Identity = 40/99 (40.40%), Postives = 62/99 (62.63%), Query Frame = 1
Query:   94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390
            S   RK RKA + AP  +R  +MSA L+ +L++KY   S+PV+K D V+V+RG +KG EG+V +V    + I +E +  +K +G+     I+ S V+IT
Sbjct:    6 SKQPRKQRKALYNAPLHLRNSVMSAMLAKELKEKYAKNSLPVKKGDTVKVLRGNFKGIEGEVSKVDYAGYKIIVEGVVNKKQDGNETAYPIHPSNVMIT 104          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL26_BRUPA (60S ribosomal protein L26 (Fragment) OS=Brugia pahangi PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.960e-13
Identity = 38/60 (63.33%), Postives = 44/60 (73.33%), Query Frame = 1
Query:   73 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRG 252
            MK N  VSSS RK RKA F APS +RR LMSAP + DLR K+ +RS+P+R DDEV V RG
Sbjct:    1 MKQNQFVSSSARKARKAPFNAPSHIRRKLMSAPSTKDLRNKHGIRSIPIRIDDEVTVTRG 60          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_METVS (50S ribosomal protein L24P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.960e-13
Identity = 40/99 (40.40%), Postives = 61/99 (61.62%), Query Frame = 1
Query:   94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390
            S   RK RKA + AP  +R  +MSA LS  L++KY   ++PV+K D V+V+RG++KG EG+V +V    + I +E +  +K +G      I+ S V+IT
Sbjct:    6 SKQPRKQRKALYNAPLHLRNSVMSAMLSKALKEKYGKNALPVKKGDTVKVLRGSFKGIEGEVSKVNYSGYKIIVEGVVNKKQDGKETPYPIHPSNVMIT 104          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_METVA (50S ribosomal protein L24P OS=Methanococcus vannielii GN=rpl24p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.960e-13
Identity = 40/99 (40.40%), Postives = 61/99 (61.62%), Query Frame = 1
Query:   94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390
            S   RK RKA + AP  +R  +MSA LS  L++KY   ++PV+K D V+V+RG++KG EG+V +V    + I +E +  +K +G      I+ S V+IT
Sbjct:    6 SKQPRKQRKALYNAPLHLRNSVMSAMLSKALKEKYGKNALPVKKGDTVKVLRGSFKGIEGEVSKVNYSGYKIIVEGVVNKKQDGKETPYPIHPSNVMIT 104          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_CALMQ (50S ribosomal protein L24P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.960e-13
Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = 1
Query:   94 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVI 387
            SS  RK  KA   AP   RR L++APLS DL+++  +R +PVR  D V ++RG +KG  GKV +V  ++  I+++  + +K +G  V   I+ SKVVI
Sbjct:    7 SSQPRKQHKALTKAPWHARRRLLTAPLSKDLQRQLGIRRIPVRVGDTVLILRGDFKGTRGKVTRVDYKRVRIYVDSASFKKPSGEAVYYPIHPSKVVI 104          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_METMA (50S ribosomal protein L24P OS=Methanosarcina mazei GN=rpl24p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.699e-12
Identity = 42/100 (42.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:   91 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390
            VS   RK RKA +TAP  +R+  M A LS  L ++Y  RS  V   D V+++RG +KG EGKV  V      I ++ +   KV+G+ V   IN S V+IT
Sbjct:    8 VSKQPRKQRKARYTAPLHIRQKFMGARLSEALAKQYGTRSAAVITGDTVKIMRGDFKGTEGKVQSVSLMDGTIAVDGVISTKVDGTEVPRPINPSNVMIT 107          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_ARCFU (50S ribosomal protein L24P OS=Archaeoglobus fulgidus GN=rpl24p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.699e-12
Identity = 39/102 (38.24%), Postives = 64/102 (62.75%), Query Frame = 1
Query:   85 PRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390
            P+    R++ R  + TA    R  L+ A LS DLR+KY  R++ VRK D+V+++RG + G EG+V++V  ++  I ++ +T  K +G+ V V I+ S V+IT
Sbjct:    4 PKSKQPRKQRRWLYKTAKLHERHKLLHATLSKDLRKKYGKRAIRVRKGDKVRIMRGQFAGHEGRVLEVDMKRCRITVDGVTVTKADGTEVAVPIHPSNVMIT 105          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_METTP (50S ribosomal protein L24P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12
Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:   91 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390
            VS   RK RKA F AP  +R+  M A LS +LR++Y  RS  V+K D V+V+RG   G EG+V+ V  ++ VI +  ++  + +G+ V   I+ S V+IT
Sbjct:    2 VSKQPRKQRKARFNAPLHMRQRFMHAMLSPELRKEYKKRSAQVKKGDTVKVMRGDNAGVEGEVLSVDLKRCVITVAGVSNFRADGTEVPRPIHPSNVMIT 101          
BLAST of CK935672 vs. ExPASy Swiss-Prot
Match: RL24_METBF (50S ribosomal protein L24P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.456e-12
Identity = 43/100 (43.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:   91 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINSSKVVIT 390
            VS   RK RKA + AP  VR+  M A LS  L ++Y  RS  V   D V+V+RG YKG EGKV  V  +   I ++ +   KV+G+ V   I  S V+IT
Sbjct:    2 VSKQPRKQRKARYNAPLHVRQKFMGARLSEALSKEYGTRSAAVIAGDTVKVMRGDYKGTEGKVQAVSLQDGTISVDGVISTKVDGTEVPRPIYPSNVMIT 101          
The following BLAST results are available for this feature:
BLAST of CK935672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RL24_PYRCJ7.626e-1341.8450S ribosomal protein L24P OS=Pyrobaculum calidifo... [more]
RL24_METMP7.626e-1340.4050S ribosomal protein L24P OS=Methanococcus maripa... [more]
RL26_BRUPA9.960e-1363.3360S ribosomal protein L26 (Fragment) OS=Brugia pah... [more]
RL24_METVS9.960e-1340.4050S ribosomal protein L24P OS=Methanococcus vannie... [more]
RL24_METVA9.960e-1340.4050S ribosomal protein L24P OS=Methanococcus vannie... [more]
RL24_CALMQ9.960e-1341.8450S ribosomal protein L24P OS=Caldivirga maquiling... [more]
RL24_METMA1.699e-1242.0050S ribosomal protein L24P OS=Methanosarcina mazei... [more]
RL24_ARCFU1.699e-1238.2450S ribosomal protein L24P OS=Archaeoglobus fulgid... [more]
RL24_METTP4.943e-1241.0050S ribosomal protein L24P OS=Methanosaeta thermop... [more]
RL24_METBF6.456e-1243.0050S ribosomal protein L24P OS=Methanosarcina barke... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_A04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935672 ID=CK935672; Name=CK935672; organism=Citrus sinensis; type=EST; length=742bp
GGGGAGCCTCTCCCAGTTCTTCCTCTAGCTGCCGCTGTTGTAAAACCCTA
GGCCCAGTCCTCCACATCCACCATGAAGTACAACCCCAGGGTGTCATCCT
CTCGCCGTAAGAACCGGAAGGCGCACTTCACCGCCCCTTCCAGCGTGCGC
CGCATCTTGATGAGCGCGCCGCTGTCCACAGACCTCCGTCAGAAGTACAA
CGTAAGGTCGATGCCTGTGCGCAAGGACGACGAGGTTCAGGTTGTGCGTG
GGACCTACAAGGGGCGCGAGGGCAAGGTCGTTCAAGTGTATCGCCGGAAG
TGGGTCATTCACATCGAGCGCATCACTCGCGAGAAGGTTAATGGATCCAC
TGTGAATGTGGGAATCAACTCATCAAAGGTCGTGATCACCAAGCTCCGTC
TGGACAAGGACAGGAAGTCTTTGCTCGATCGCAAGGCCAAGGGACGTGCC
GCCGCCGACAAGGAGAAGGGTACCAAGTTCACCCCAGAGGATATTATGCA
GAGCGTTGACTAATTTTGATAAGAGGTTGTTTTTAAAGTTTTTGTTTAAT
CATAGAATTTATGGATTTAGGATGTTTTGTTTTGGCAATGTCACTAAGAT
ATTTCTATTGTTATTGTGTTATGTCATGAGGATCCGATTATGGGCTTATG
TTGGAGATTTAAGATACTTCTTTGGATTTTCTCCTCGTCGTTTCAATTTT
AATTCTATATTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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