CK935676

Overview
NameCK935676
Unique NameCK935676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: Y325_THEMA (Uncharacterized oxidoreductase TM_0325 OS=Thermotoga maritima GN=TM_0325 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.236e-13
Identity = 60/188 (31.91%), Postives = 96/188 (51.06%), Query Frame = 3
Query:   78 RTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHL-FLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEVPD-GMAIVALNPGVINTDML 635
            + VLITG   G+G+  A   A+RG  V     +++K       + +      F+  D+  ++  E++ +  VE  G  DI+VNNAG +   N I + S E+FD  +  NVKG   + ++ +  M     G+IVN+SS  G  G      Y  SK A+ GL+RS+A +  D G+ + A+ PG   ++ L
Sbjct:    6 KVVLITGAGSGIGKKAAVMFAERGAKVAINDISEEKGKETVELIKSMGGEAAFIFGDVAKDA--EQIVKKTVETFGRLDILVNNAGIVPYGN-IEETSEEDFDKTMAVNVKGPFLLSKYAVEQMKKQGGGVIVNVSSEAGLIGIPRRCVYSVSKAALLGLTRSLAVDYVDYGIRVNAVCPGTTQSEGL 190          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: PGDH_MACFA (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Macaca fascicularis GN=HPGD PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.236e-13
Identity = 60/195 (30.77%), Postives = 93/195 (47.69%), Query Frame = 3
Query:   78 RTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPN---PDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPE-EFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRS---VAKEVPDGMAIVALNPGVINTDMLTS 641
            +  L+TG ++G+GRA A+ L  +G  V       +     ++ L     P   LF+  D+     + +  R VV+  G  DI+VNNAG  N+ N  W+ + +    +VI     G+  M +         + GII+NMSS  G    A    YCASK  + G +RS    A  +  G+ + A+ PG +NT +L S
Sbjct:    6 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALDEKFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVNNEKN--WEKTLQINLVSVISGTYLGLDYMSK-----QNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILES 193          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: PGDH_HUMAN (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Homo sapiens GN=HPGD PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.236e-13
Identity = 60/195 (30.77%), Postives = 93/195 (47.69%), Query Frame = 3
Query:   78 RTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPN---PDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPE-EFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRS---VAKEVPDGMAIVALNPGVINTDMLTS 641
            +  L+TG ++G+GRA A+ L  +G  V       +     ++ L     P   LF+  D+     + +  R VV+  G  DI+VNNAG  N+ N  W+ + +    +VI     G+  M +         + GII+NMSS  G    A    YCASK  + G +RS    A  +  G+ + A+ PG +NT +L S
Sbjct:    6 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALDEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVNNEKN--WEKTLQINLVSVISGTYLGLDYMSK-----QNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILES 193          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: PGDH_CAVPO (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Cavia porcellus GN=HPGD PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.236e-13
Identity = 60/195 (30.77%), Postives = 93/195 (47.69%), Query Frame = 3
Query:   78 RTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQD---KLTSLQSELPNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPE-EFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVA---KEVPDGMAIVALNPGVINTDMLTS 641
            +  L+TG ++G+GRA A+ L  +G  V       +   K  +   E   P   LF+  D+     + +    VV+  G  DI+VNNAG  N+ N  W+ + +    +VI     G+  M +         + G+I+NMSS  G    A    YCASK  + G +RS A   K +  G+ + A+ PG +NT +L S
Sbjct:    6 KVALVTGAAQGIGRAFAEGLLHKGAKVALVDWNLEAGVKCKAALDEEFEPQKTLFIQCDVADQEQLRDTFTKVVDYFGRLDILVNNAGVNNEKN--WEKTLQINLVSVISGTYLGLDYMSKQH-----GGEGGVIINMSSLAGLMPVAQQPVYCASKHGIIGFTRSAAMARKLMNSGVRMNAICPGFVNTSILQS 193          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: EPHD_MYCTU (Probable oxidoreductase ephD OS=Mycobacterium tuberculosis GN=ephD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.236e-13
Identity = 56/189 (29.63%), Postives = 92/189 (48.68%), Query Frame = 3
Query:   84 VLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHLFLNV-DIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPI-KQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEV-PDGMAIVALNPGVINTDMLTS 641
            V +TG   G+GR  A   A+ G  ++     +  +    +E+       +  V D+    +VE  A  V  + GVPDI+VNNAG I +  +  D   E+FD V+  N+ G+ N  R F   ++     G IVN+SS    +    ++ YC SK A    S  +  E+   G+ +  + PGVI+T+++ +
Sbjct:  327 VSVTGAGSGIGRETALAFAREGAEIVISDIDEATVKDTAAEIAARGGIAYPYVLDVSDAEAVEAFAERVSAEHGVPDIVVNNAG-IGQAGRFLDTPAEQFDRVLAVNLGGVVNGCRAFGQRLVERGTGGHIVNVSSMAAYAPLQSLSAYCTSKAATYMFSDCLRAELDAAGVGLTTICPGVIDTNIVAT 514          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: EPHD_MYCBO (Probable oxidoreductase ephD OS=Mycobacterium bovis GN=ephD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.236e-13
Identity = 56/189 (29.63%), Postives = 92/189 (48.68%), Query Frame = 3
Query:   84 VLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHLFLNV-DIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPI-KQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEV-PDGMAIVALNPGVINTDMLTS 641
            V +TG   G+GR  A   A+ G  ++     +  +    +E+       +  V D+    +VE  A  V  + GVPDI+VNNAG I +  +  D   E+FD V+  N+ G+ N  R F   ++     G IVN+SS    +    ++ YC SK A    S  +  E+   G+ +  + PGVI+T+++ +
Sbjct:  327 VSVTGAGSGIGRETALAFAREGAEIVISDIDEATVKDTAAEIAARGGIAYPYVLDVSDAEAVEAFAERVSAEHGVPDIVVNNAG-IGQAGRFLDTPAEQFDRVLAVNLGGVVNGCRAFGQRLVERGTGGHIVNVSSMAAYAPLQSLSAYCTSKAATYMFSDCLRAELDAAGVGLTTICPGVIDTNIVAT 514          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: DHRS7_HUMAN (Dehydrogenase/reductase SDR family member 7 OS=Homo sapiens GN=DHRS7 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.236e-13
Identity = 56/191 (29.32%), Postives = 98/191 (51.31%), Query Frame = 3
Query:   84 VLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSE-LPNPDHH----LFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEVPDGMAIVALN--PGVINTDML 635
            V +TG S G+G  LA +L+K G +++  +R   +L  ++   L N +      L L +D+    S E   + V+++ G  DI+VNN G +++ +   D S + +  +I+ N  G  ++ +  +P MI  KQG IV ++S  G     L   YCASK A+ G    +  E+     I+  N  PG + ++++
Sbjct:   53 VWVTGASSGIGEELAYQLSKLGVSLVLSARRVHELERVKRRCLENGNLKEKDILVLPLDLTDTGSHEAATKAVLQEFGRIDILVNNGG-MSQRSLCMDTSLDVYRKLIELNYLGTVSLTKCVLPHMIERKQGKIVTVNSILGIISVPLSIGYCASKHALRGFFNGLRTELATYPGIIVSNICPGPVQSNIV 242          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: CBR4_XENTR (Carbonyl reductase family member 4 OS=Xenopus tropicalis GN=cbr4 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.236e-13
Identity = 53/188 (28.19%), Postives = 98/188 (52.13%), Query Frame = 3
Query:   72 VSRTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEVPD-GMAIVALNPGVINTDM 632
            +++   + G SRG+G+A+++ LA+R + V   SR  +   +  +E+     HL L+ D+   + +++  + +    G  D +VN+AG I ++  +     E+  +++  N+ G     +  +  MI  + G IVN+ S  G  G    + Y ASK  + G S+S+AKEV    + +  + PG I+TDM
Sbjct:    1 MTKVCAVFGGSRGIGKAVSKLLAQRDYKVAVISRDLEVAKAAAAEV---GAHLALSCDVSKENEIQDTFKEITNNLGNVDYLVNSAG-IRRDALLLRTRSEDIRSLLSVNLVGTIQTCKLALRSMIQQQGGAIVNIGSIVGHKGNIGQSIYGASKEGLIGFSKSLAKEVAKRNIRVNVVAPGFIHTDM 184          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: Y1430_HAEIN (Probable NADP-dependent dehydrogenase HI1430 OS=Haemophilus influenzae GN=HI1430 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.076e-12
Identity = 44/135 (32.59%), Postives = 70/135 (51.85%), Query Frame = 3
Query:   81 TVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSS 485
            T L+TG + G G A+ ++L + G+ VIG  R  D+L  + S+L N  + L L  DIR   +       + E     D++VNNAG             +++  +IDTN+KG+  + R  +P M+    G I+N+SS
Sbjct:    5 TALVTGATAGFGLAICKKLIEAGYKVIGTGRRADRLAEIHSQLGN--NFLPLAFDIRDEQATINALNTLPEGWQAVDLLVNNAGLALGLEPAHKADLQDWYQMIDTNIKGLVTITRLVLPNMVARNYGQIINLSS 137          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: TRN2_DATST (Tropinone reductase 2 OS=Datura stramonium GN=TR2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.076e-12
Identity = 59/189 (31.22%), Postives = 97/189 (51.32%), Query Frame = 3
Query:   81 TVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHLFLNV-DIRSNSSVEELARLVVEK-KGVPDIIVNNAG-TINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKE-VPDGMAIVALNPGVINTDML 635
            T L+TG SRG+G  + +ELA  G +V  CSR Q +L    ++  +    +  +V D+ S S  +EL   V     G  +I+VNNAG  I K  K  D + E++  ++  N +   ++     P +   ++G +V +SS  G       A Y A+K A++ L+R +A E   D + +  + PGVI T ++
Sbjct:   11 TALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAK--DYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLV 197          
The following BLAST results are available for this feature:
BLAST of CK935676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 245
Match NameE-valueIdentityDescription
Y325_THEMA8.236e-1331.91Uncharacterized oxidoreductase TM_0325 OS=Thermoto... [more]
PGDH_MACFA8.236e-1330.7715-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ma... [more]
PGDH_HUMAN8.236e-1330.7715-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ho... [more]
PGDH_CAVPO8.236e-1330.7715-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ca... [more]
EPHD_MYCTU8.236e-1329.63Probable oxidoreductase ephD OS=Mycobacterium tube... [more]
EPHD_MYCBO8.236e-1329.63Probable oxidoreductase ephD OS=Mycobacterium bovi... [more]
DHRS7_HUMAN8.236e-1329.32Dehydrogenase/reductase SDR family member 7 OS=Hom... [more]
CBR4_XENTR8.236e-1328.19Carbonyl reductase family member 4 OS=Xenopus trop... [more]
Y1430_HAEIN1.076e-1232.59Probable NADP-dependent dehydrogenase HI1430 OS=Ha... [more]
TRN2_DATST1.076e-1231.22Tropinone reductase 2 OS=Datura stramonium GN=TR2 ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004552_G11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935676 ID=CK935676; Name=CK935676; organism=Citrus sinensis; type=EST; length=924bp
GGGGGAGAGGGAGGGAAATAACAATAACAACGATGGCAGCAACGACGCCG
TTTAACGGGATAGGGAAGAGCGTATCGCGAACAGTACTGATAACGGGAGT
GAGCAGAGGATTAGGGCGAGCCCTAGCTCAAGAGTTGGCCAAGCGCGGCC
ACACCGTGATCGGCTGCTCCCGCACTCAGGATAAGCTCACCTCCCTCCAA
TCAGAACTCCCTAATCCCGACCACCACCTCTTCCTCAATGTCGACATCAG
GTCAAATAGCAGTGTTGAAGAACTAGCACGTCTTGTCGTGGAGAAGAAAG
GCGTTCCTGATATTATAGTAAACAATGCAGGTACTATTAATAAAAATAAC
AAGATTTGGGATGTTTCGCCAGAAGAATTCGACACTGTTATTGATACTAA
TGTGAAAGGCATAGCAAATATGTTGCGTCACTTCATTCCTTTGATGATTC
CAATCAAGCAAGGGATTATCGTTAATATGTCTTCTGGTTGGGGAAGATCT
GGTGCTGCCCTGGTAGCACCTTATTGTGCTTCAAAATGGGCAGTTGAAGG
GTTGTCCAGATCAGTGGCAAAGGAGGTGCCTGATGGGATGGCAATTGTTG
CTTTAAATCCTGGTGTTATTAACACTGACATGCTTACGTCCTGCTTTGGC
ACTTCTGCTGCATCATACCAGCCACCTGATGCATGGGCTTTGAAGGCAGC
TACGACGATACTCAATCTTACAGGAGCAGACAATGGTGCATCTCTTACGG
TGTGACAGAAGCTTTTACATTCAAAATGCTGGGATCCAGCTAGGCGAGCG
TAACAGTTCACTGATAAAATCATATTCACTCTTCACTCATTGAATCAAAA
AGTAGAGCAGAGTGAACTNCATTCATCTTTTGTGACTTCTATGACACCTN
NNNNNCAGGAAAGCGGTTATTCTT
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