CK935676

Overview
NameCK935676
Unique NameCK935676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: YCP6_SCHPO (Uncharacterized oxidoreductase C663.06c OS=Schizosaccharomyces pombe GN=SPCC663.06c PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.088e-12
Identity = 54/192 (28.12%), Postives = 98/192 (51.04%), Query Frame = 3
Query:   69 SVSRTVLITGVSRGLGRALAQELAKRGHTVIGCS-RTQDKLTSLQSELPNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAAL---VAPYCASKWAVEGLSRSVAKEVPD-GMAIVALNPGVINTD 629
            + ++   I G +RG+G +L +EL+ R  TV+  S R  +  T LQ    +  +   + +DI S  S  E A+ V +  G  D++  N+G  +  N + +   + +++   TNV G  ++ + F PL+   +  IIV  SS  G  GA      + Y  SK A+    + ++ E+ D G  +++++PG++ TD
Sbjct:    3 TTNKIYFIAGGNRGIGLSLVKELSNREGTVVFASARKPEAATELQEWSKSHSNVHIIKLDISSLESANEAAQEVAKAVGKVDVLWVNSGIFHSFNTVLNTPDDVWNSHYKTNVLGPIHVYQAFYPLVKKGESKIIVFTSSLVGSMGAFFPFNQSGYGQSKAALNFTMKEISFELQDEGFIVISIHPGMVRTD 194          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: RDHE2_HUMAN (Epidermal retinol dehydrogenase 2 OS=Homo sapiens GN=SDR16C5 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 4.088e-12
Identity = 58/193 (30.05%), Postives = 83/193 (43.01%), Query Frame = 3
Query:   84 VLITGVSRGLGRALAQELAKRGHTVI--GCSRTQDKLTSLQSELPNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEV----PDGMAIVALNPGVINTDMLTSC 644
            VLITG   GLGR LA + A+ G  ++    ++  ++ T   +             D      V  +A  V ++ G   I++NNAG +    K  D   E  +   D N K      + F+P MI    G +V +SS  G SG   +A YCASK+A  G + SV  E       G+    + P  I T M   C
Sbjct:   43 VLITGAGSGLGRLLALQFARLGSVLVLWDINKEGNEETCKMAREAGATRVHAYTCDCSQKEGVYRVADQVKKEVGDVSILINNAGIVT-GKKFLDCPDELMEKSFDVNFKAHLWTYKAFLPAMIANDHGHLVCISSSAGLSGVNGLADYCASKFAAFGFAESVFVETFVQKQKGIKTTIVCPFFIKTGMFEGC 234          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: PHBB_ZOORA (Acetoacetyl-CoA reductase OS=Zoogloea ramigera GN=phbB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.088e-12
Identity = 59/190 (31.05%), Postives = 96/190 (50.53%), Query Frame = 3
Query:   72 VSRTVLITGVSRGLGRALAQELAKRGHTVIGC-SRTQDKLTSLQSELPNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKE-VPDGMAIVALNPGVINTDML 635
            +SR  L+TG SRG+G A++  L   G+ V    +   D     ++E     +      D+ S  +  E    V    G  D++VNNAG I K+     ++P++++ VI+TN+ G+ NM       M     G IVN+SS  G+ G    A Y A+K    G ++++A+E    G+ + A+ PG I T+M+
Sbjct:    1 MSRVALVTGGSRGIGAAISIALKAAGYKVAASYAGNDDAAKPFKAETGIAVY----KWDVSSYEACVEGIAKVEADLGPIDVLVNNAG-ITKDAMFHKMTPDQWNAVINTNLTGLFNMTHPVWSGMRDRSFGRIVNISSINGQKGQMGQANYSAAKAGDLGFTKALAQEGAAKGITVNAICPGYIGTEMV 185          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: HSDL1_CHICK (Hydroxysteroid dehydrogenase-like protein 1 OS=Gallus gallus GN=HSDL1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.088e-12
Identity = 67/226 (29.65%), Postives = 118/226 (52.21%), Query Frame = 3
Query:   60 IGKSVSRTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPD----IIVNNAGTI-NKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFI-PLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKE-VPDGMAIVALNPGVINTDMLTSCFGTSAASYQPPDA--WALKAATTI 710
            I K   R  ++TG + G+G+A A+ELAKRG  +I  SR+++KL ++   + +  + +  +  +   S   E  + +  K+G+ D    I+VNN G      +   ++S +    +I+ N+   ANM+ H + P M+  ++G IVN+SS        ++  Y ASK  ++  SR++  E    G+ + +L P VI T M++    TS  S+  P A  +A  A +T+
Sbjct:   62 IVKRYGRWAVVTGSTDGIGKAYAEELAKRGVNIILISRSKEKLEAVSRSI-SETYKVETDFIVADFSKGREAYQAI--KEGLKDREIGILVNNVGLFYTYPDYFTNLSEDMLWDMINVNIAS-ANMMVHIVLPGMVEKRKGAIVNVSSASCCQPTPMLTTYGASKAYLDYFSRALYYEYASKGIFVQSLTPFVIATRMVSCSRVTSKRSFFFPSAEEYASHAISTL 283          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: DHB14_BOVIN (17-beta-hydroxysteroid dehydrogenase 14 OS=Bos taurus GN=HSD17B14 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.088e-12
Identity = 49/186 (26.34%), Postives = 93/186 (50.00%), Query Frame = 3
Query:   78 RTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVA-KEVPDGMAIVALNPGVINTDM 632
            + V++TG  RG+G  + +   + G  V+ C + + +  +++ ELP     +FL  D+     V  L    + + G  D IVNNAG         + S + F  +++ N+ G   + +  +P  +   +G ++N+SS  G  G +   PY A+K AV  +++++A  E   G+ +  ++PG I T +
Sbjct:   10 KVVIVTGGGRGIGAGIVRAFVESGAQVVICDKDEARGRAVERELPGT---VFLLCDVTREEDVRTLVSETIRRFGRLDCIVNNAGYHPPPQWPEETSAQGFRQLLELNLLGTYTLTKLALP-HLRKSRGNVINISSLVGAIGQSQAVPYVATKGAVTAMTKALALDESQYGVRVNCISPGNIWTPL 191          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: DCXR_MESAU (L-xylulose reductase OS=Mesocricetus auratus GN=DCXR PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.088e-12
Identity = 57/187 (30.48%), Postives = 94/187 (50.27%), Query Frame = 3
Query:   78 RTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPI-KQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEV-PDGMAIVALNPGVINTDM 632
            R  L+TG  +G+GR+    L   G  V+  SRTQ  L SL SE P  +    + VD+    + E+     +   G  D++VNNA  +       +V+ E FD   + N++ +  + +     MI     G IVN+SS   +   A  + YC++K A++ L++ +A E+ P  + + A+NP V+ T M
Sbjct:    8 RRALVTGAGKGIGRSTVLALQAAGAHVVAVSRTQADLDSLVSECPGVE---TVCVDLADWEATEQ----ALSSVGPVDLLVNNA-AVALLQPFLEVTKEAFDMSFNVNLRAVIQVSQIVARGMIARGAPGAIVNVSSQASQRALANHSVYCSTKGALDMLTKMMALELGPHKIRVNAVNPTVVMTSM 186          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: DCXR_HUMAN (L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 4.088e-12
Identity = 59/190 (31.05%), Postives = 93/190 (48.95%), Query Frame = 3
Query:   78 RTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIAN----MLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEV-PDGMAIVALNPGVINTDM 632
            R VL+TG  +G+GR   Q L   G  V+  SRTQ  L SL  E P  +    + VD+    + E     V    G  D++VNNA  +       +V+ E FD   + N++ +      + R  I   +P   G IVN+SS   +      + YC++K A++ L++ +A E+ P  + + A+NP V+ T M
Sbjct:    8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEP---VCVDLGDWEATERALGSV----GPVDLLVNNA-AVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVP---GAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSM 186          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: CPNA_COMTE (Cyclopentanol dehydrogenase OS=Comamonas testosteroni GN=cpnA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.088e-12
Identity = 56/193 (29.02%), Postives = 96/193 (49.74%), Query Frame = 3
Query:   60 IGKSVSRTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHL-FLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEV-PDGMAIVALNPGVINTDM 632
            +G+   + VL+TG + G+G      LA+ G TV      ++      +E+        FL++D+ + +        ++ +    D +VNNAG +     + D S EE+D + + NV+ +    R  I  M    +G IVN+SS +G  GA   A Y ASK AV   +++ A ++ P  + + +++PGVI T M
Sbjct:    1 MGRVNDKVVLVTGGAMGMGLTHCTLLAREGATVYLSDMNEELGHQAVAEIRRQGGKAHFLHLDVTNENHWTGAVDTILAESDRLDALVNNAGILTLK-PVQDTSNEEWDRIFEINVRSVFLGTRAVIEPMRKAHKGCIVNVSSIYGLVGAPGAAAYEASKGAVRLFTKACAVDLAPFNIRVNSVHPGVIATPM 192          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: CPNA_COMS9 (Cyclopentanol dehydrogenase OS=Comamonas sp. (strain NCIMB 9872) GN=cpnA PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.088e-12
Identity = 56/193 (29.02%), Postives = 96/193 (49.74%), Query Frame = 3
Query:   60 IGKSVSRTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHL-FLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEV-PDGMAIVALNPGVINTDM 632
            +G+   + VL+TG + G+G      LA+ G TV      ++      +E+        FL++D+ + +        ++ +    D +VNNAG +     + D S EE+D + + NV+ +    R  I  M    +G IVN+SS +G  GA   A Y ASK AV   +++ A ++ P  + + +++PGVI T M
Sbjct:    1 MGRVNDKVVLVTGGAMGMGLTHCTLLAREGATVYLSDMNEELGHQAVAEIRRQGGKAHFLHLDVTNENHWTGAVDTILAESDRLDALVNNAGILTLK-PVQDTSNEEWDRIFEINVRSVFLGTRAVIEPMRKAHKGCIVNVSSIYGLVGAPGAAAYEASKGAVRLFTKACAVDLAPFNIRVNSVHPGVIATPM 192          
BLAST of CK935676 vs. ExPASy Swiss-Prot
Match: BDH2_MOUSE (3-hydroxybutyrate dehydrogenase type 2 OS=Mus musculus GN=Bdh2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.088e-12
Identity = 54/194 (27.84%), Postives = 97/194 (50.00%), Query Frame = 3
Query:   60 IGKSVSRTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSS-GWGRSGAALVAPYCASKWAVEGLSRSVAKE-VPDGMAIVALNPGVINTDML 635
            +G+   + +++T  ++G+GRA A   A+ G  VI     + KL  L+S        L +    + +    E+ R+        D++ N AG ++ +  I D   +++D  ++ NV+ +  M++ F+P M+  K G I+NMSS      G      Y A+K AV GL++SVA + +  G+    + PG ++T  L
Sbjct:    1 MGRLDGKVIVLTAAAQGIGRASALAFAREGAKVIATDINESKLQELESYRGIQTRVLDVTKKRQIDQFASEIERI--------DVLFNVAGFVH-HGTILDCEEKDWDFSMNLNVRSMFLMIKAFLPKMLAQKSGNIINMSSVASSIKGVENRCVYSATKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSL 185          
The following BLAST results are available for this feature:
BLAST of CK935676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 245
Match NameE-valueIdentityDescription
YCP6_SCHPO4.088e-1228.13Uncharacterized oxidoreductase C663.06c OS=Schizos... [more]
RDHE2_HUMAN4.088e-1230.05Epidermal retinol dehydrogenase 2 OS=Homo sapiens ... [more]
PHBB_ZOORA4.088e-1231.05Acetoacetyl-CoA reductase OS=Zoogloea ramigera GN=... [more]
HSDL1_CHICK4.088e-1229.65Hydroxysteroid dehydrogenase-like protein 1 OS=Gal... [more]
DHB14_BOVIN4.088e-1226.3417-beta-hydroxysteroid dehydrogenase 14 OS=Bos tau... [more]
DCXR_MESAU4.088e-1230.48L-xylulose reductase OS=Mesocricetus auratus GN=DC... [more]
DCXR_HUMAN4.088e-1231.05L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 ... [more]
CPNA_COMTE4.088e-1229.02Cyclopentanol dehydrogenase OS=Comamonas testoster... [more]
CPNA_COMS94.088e-1229.02Cyclopentanol dehydrogenase OS=Comamonas sp. (stra... [more]
BDH2_MOUSE4.088e-1227.843-hydroxybutyrate dehydrogenase type 2 OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004552_G11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935676 ID=CK935676; Name=CK935676; organism=Citrus sinensis; type=EST; length=924bp
GGGGGAGAGGGAGGGAAATAACAATAACAACGATGGCAGCAACGACGCCG
TTTAACGGGATAGGGAAGAGCGTATCGCGAACAGTACTGATAACGGGAGT
GAGCAGAGGATTAGGGCGAGCCCTAGCTCAAGAGTTGGCCAAGCGCGGCC
ACACCGTGATCGGCTGCTCCCGCACTCAGGATAAGCTCACCTCCCTCCAA
TCAGAACTCCCTAATCCCGACCACCACCTCTTCCTCAATGTCGACATCAG
GTCAAATAGCAGTGTTGAAGAACTAGCACGTCTTGTCGTGGAGAAGAAAG
GCGTTCCTGATATTATAGTAAACAATGCAGGTACTATTAATAAAAATAAC
AAGATTTGGGATGTTTCGCCAGAAGAATTCGACACTGTTATTGATACTAA
TGTGAAAGGCATAGCAAATATGTTGCGTCACTTCATTCCTTTGATGATTC
CAATCAAGCAAGGGATTATCGTTAATATGTCTTCTGGTTGGGGAAGATCT
GGTGCTGCCCTGGTAGCACCTTATTGTGCTTCAAAATGGGCAGTTGAAGG
GTTGTCCAGATCAGTGGCAAAGGAGGTGCCTGATGGGATGGCAATTGTTG
CTTTAAATCCTGGTGTTATTAACACTGACATGCTTACGTCCTGCTTTGGC
ACTTCTGCTGCATCATACCAGCCACCTGATGCATGGGCTTTGAAGGCAGC
TACGACGATACTCAATCTTACAGGAGCAGACAATGGTGCATCTCTTACGG
TGTGACAGAAGCTTTTACATTCAAAATGCTGGGATCCAGCTAGGCGAGCG
TAACAGTTCACTGATAAAATCATATTCACTCTTCACTCATTGAATCAAAA
AGTAGAGCAGAGTGAACTNCATTCATCTTTTGTGACTTCTATGACACCTN
NNNNNCAGGAAAGCGGTTATTCTT
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